Assays
What is an Assay?Filters
Information about the BioProject submission of all whole-genome-sequenced samples used in this study
Submitter: David Calderón-Franco
Assay type: Metagenomics
Technology type: Illumina HiSeq
Investigation: Sampling vicinity of industrial settings for pa...
Sequencing of 150 bp paired-end reads on an Illumina NextSeq 500 or 2000
Submitter: Lennart Bartels
Assay type: DNA Sequencing
Technology type: Next generation sequencing
Investigation: Genome-wide association study on ampicillin res...
Submitter: Janette Alford
Assay type: Experimental Assay Type
Technology type: Progressive Curve Experiment
Investigation: Phosphoglucomutase variants in Synechocystis
Study: Enzymatic characterization
Submitter: Janette Alford
Assay type: Experimental Assay Type
Technology type: Progressive Curve Experiment
Investigation: Phosphoglucomutase variants in Synechocystis
Study: Enzymatic characterization
Submitter: Janette Alford
Assay type: Experimental Assay Type
Technology type: Progressive Curve Experiment
Investigation: Phosphoglucomutase variants in Synechocystis
Study: Enzymatic characterization
Submitter: Janette Alford
Assay type: Experimental Assay Type
Technology type: Progressive Curve Experiment
Investigation: Phosphoglucomutase variants in Synechocystis
Study: Enzymatic characterization
Submitter: Lars Wöhlbrand
Assay type: Protein Identification
Technology type: Liquid Chromatography-tandom Mass Spectrometry
Investigation: Systems biology investigation of aromatic compo...
Study: Experimental multi-OMICS
Submitter: Lars Wöhlbrand
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Heat stress response of Prorcentrum cordatum
Submitter: Lars Wöhlbrand
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Heat stress response of Prorcentrum cordatum
Submitter: Meina Neumann-Schaal
Assay type: Experimental Assay Type
Technology type: Gas Chromatography Mass Spectrometry
Investigation: Salmonella enterica relies on carbon metabolism...
Submitter: Jana Kalvelage
Assay type: Organism or Strain Characteristics
Technology type: Technology Type
Investigation: Proteomic analyses of the nuclear fraction of P...
Submitter: Lars Wöhlbrand
Assay type: Protein Expression Profiling
Technology type: Liquid Chromatography-tandom Mass Spectrometry
Investigation: Proteomic analyses of the nuclear fraction of P...
Submitter: Lars Wöhlbrand
Assay type: Protein Identification
Technology type: Ion Mobility Spectrometry Mass Spectrometry
Investigation: Proteomic analyses of the nuclear fraction of P...
Submitter: Jana Kalvelage
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Proteomic analyses of the nuclear fraction of P...
Submitter: Meina Neumann-Schaal
Assay type: Metabolite Profiling
Technology type: Liquid Chromatography Mass Spectrometry
Investigation: Systems biology investigation of aromatic compo...
Study: Experimental multi-OMICS
Submitter: Sarah Kirstein
Assay type: Experimental Assay Type
Technology type: Gas Chromatography Mass Spectrometry
Investigation: Systems biology investigation of aromatic compo...
Study: Experimental multi-OMICS
Harvest optical densites and methods of transcriptom, proteom and metabolom samples for all tested substrat conditions.
Submitter: Meina Neumann-Schaal
Assay type: Experimental Assay Type
Technology type: Cultivation experiment
Investigation: Systems biology investigation of aromatic compo...
Study: Experimental multi-OMICS
Submitter: Patrick Becker
Assay type: Transcriptomics
Technology type: Rna-seq
Investigation: Systems biology investigation of aromatic compo...
Study: Experimental multi-OMICS
Submitter: Patrick Becker
Assay type: Genomics
Technology type: Technology Type
Investigation: Systems biology investigation of aromatic compo...
Study: Genome re-annotation
Protein copy number at 6h, 12h, 24h, 48h, 72h, 96h, average values and SD for the measurements
Submitter: Niels Zondervan
Assay type: Proteomics
Technology type: Technology Type
Investigation: Modelling of M. pneumoniae metabolism
Study: Proteomics analysis
Metabolomics time series measurements for internal metabolites for 6h, 24h and 48h for multiple experiments. Largely based on MAss spectrometry, bioluminescence kits to measure NAD, NADH at 24h, other time points are infered from relative measurements times the absolute measurements at 24h.
Submitter: Niels Zondervan
Assay type: Experimental Assay Type
Technology type: Mass Spectrometry
Investigation: Modelling of M. pneumoniae metabolism
Study: Metabolomics measurements
Measurements of external metabolites based on growth curve data. Flux estimates for uptake of external metabolites such as glucose and production rates for external metabolites lactate and acetate
Submitter: Niels Zondervan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Modelling of M. pneumoniae metabolism
Study: Metabolomics measurements
Simple overview of all samples used for training, internal validation by copasi en external validation. Overview of samples metadata, mean metabolite concentration and enzyme concentrations used in the model. Only metabolites present in the model are shown.
Submitter: Niels Zondervan
Assay type: Experimental Assay Type
Technology type: Mass Spectrometry
Investigation: Modelling of M. pneumoniae metabolism
Study: Metabolomics measurements
Submitter: Dorothee Houry
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Submitter: Dorothee Houry
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Submitter: Dorothee Houry
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Submitter: Dorothee Houry
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Submitter: Dorothee Houry
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Comparison of Kcat values from the model and values from literature.
Submitter: Niels Zondervan
Assay type: Enzymatic Assay
Technology type: Technology Type
Investigation: Modelling of M. pneumoniae metabolism
Study: Core Model training
Submitter: Niels Zondervan
Assay type: Transcriptional Profiling
Technology type: Technology Type
Investigation: Modelling of M. pneumoniae metabolism