Assays

Organisms: No organisms

SOPs: No SOPs

Data files: BioProject and SRA metadata, Metadata: environmental metagenomes

Snapshots: No snapshots

Organisms: No organisms

SOPs: No SOPs

Data files: WGS ENA sbmissions

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Organisms: No organisms

Models: No Models

SOPs: No SOPs

Data files: PegasShiny tool, Tab-separated input files for PegasShiny with i..., VCF file of non-synonymous ftsI variants in 247...

Snapshots: No snapshots

Organisms: No organisms

SOPs: No SOPs

Data files: Lineweaver-Burk Kinetic SynPGM1, Lineweaver-Burk Kinetic SynPGM1 S47A

Snapshots: No snapshots

Organisms: No organisms

SOPs: No SOPs

Data files: SynPGM1 IC50 of fructose-1,6-bisphosphate

Snapshots: No snapshots

Organisms: No organisms

SOPs: No SOPs

Data files: SynPGM1 EC50 of glucose-1,6-bisphosphate

Snapshots: No snapshots

Organisms: No organisms

SOPs: No SOPs

Data files: Michaelis-Menten Kinetic SynPGM1, Michaelis-Menten Kinetic SynPGM1 S47A, Michaelis-Menten Kinetic SynPGM1 S47D

Snapshots: No snapshots

Organisms: No organisms

SOPs: SOP – Protein preparation, nanoLC-MS/MS analyse...

Data files: Detailed peptide data for identified proteins, Protein identification data

Snapshots: No snapshots

Organisms: No organisms

SOPs: No SOPs

Data files: 2D LC MS/MS peptide analyses, Membrane protein enriched fraction, Shotgun proteomic data

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Organisms: No organisms

SOPs: No SOPs

Data files: GCMS metabolite data

Snapshots: No snapshots

Organisms: No organisms

Models: WELT code

SOPs: No SOPs

Data files: BioCreative VII Track 2 - NLM-CHEM

Snapshots: No snapshots

Organisms: No organisms

Models: No Models

SOPs: No SOPs

Data files: BioCreative VII Track 2 - NLM-CHEM

Snapshots: No snapshots

Organisms: No organisms

SOPs: No SOPs

Data files: Salmonella enterica_metabolite data

Snapshots: No snapshots

Organisms: No organisms

SOPs: No SOPs

Data files: Distribution of nuclear pores in the nuclear en..., Illustration of chromosomal packing in the nucl..., Image stack 3D reconstruction of the nucleus of..., Volume calculations of nuclear structures of P....

Snapshots: No snapshots

Organisms: No organisms

SOPs: No SOPs

Data files: GeLC ESI iontrap MS-based protein identification

Snapshots: No snapshots

Organisms: No organisms

SOPs: No SOPs

Data files: Shotgun proteomic data timsTOF MS/MS

Snapshots: No snapshots

Organisms: No organisms

Models: No Models

SOPs: No SOPs

Data files: Supplementary file 1: Search Terms, Supplementary file 2: Publications surveyed

Snapshots: No snapshots

Organisms: No organisms

Models: R script

SOPs: No SOPs

Data files: No Data files

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Organisms: No organisms

SOPs: No SOPs

Data files: Annotation of P. cordatum, Calculations of predictions of proteins of P. c..., Functional categorization of identified protein..., Protein data of nuclear processes of P. cordatum, Summary of identified pigment binding proteins ..., Summary of ribosomal proteins of P. cordatum, Summary table of proteomic data of P. cordatum

Snapshots: No snapshots

Organisms: Aromatoleum aromaticum

SOPs: SOP_analysis_CoA-esters, SOP_data_evalutation_CoA-esters, SOP_extraction_CoA-esters

Data files: CoA LC/MS Data Sample Identification, NO3_MS_CoA_Data, O2_MS_CoA_Data, Results - CoA-esters via LC-MS

Snapshots: No snapshots

Organisms: No organisms

SOPs: SOP - Analysis of non-volatile, small, polar me..., SOP - Data evaluation of non-volatile, small, p..., SOP - Extraction of non-volatile, small, polar ...

Data files: NO3_MS_small_metabolites_Data, Non-volatile, small, polar metabolites´GC/MS da..., O2_MS_small_metabolites_Data, Results - Non-volatile, small, polar metabolite...

Snapshots: No snapshots

Organisms: No organisms

SOPs: SOP – Substrate adaptation, cultivation and har...

Data files: No Data files

Snapshots: No snapshots

Organisms: Aromatoleum aromaticum : EbN1T (wild-type / wild-type)

Models: EbN1 stoichiometric model iAA835 (Metano), EbN1 stoichiometric model iAA835 (SBML)

SOPs: No SOPs

Data files: Model | Biomass composition, Model | Flux balance analysis (FBA), Model | Simulation parameters and results

Snapshots: No snapshots

Organisms: No organisms

Models: EbN1 stoichiometric model iAA835 (Metano)

SOPs: No SOPs

Data files: Model - Scenario - 3-HBz aerobic, Model - Scenario - 3-HBz anaerobic, Model - Scenario - 4HPP aerobic, Model - Scenario - 4HPP anaerobic, Model - Scenario - Acetate aerobic, Model - Scenario - Acetate anaerobic, Model - Scenario - Benzoate aerobic, Model - Scenario - Benzoate anaerobic, Model - Scenario - Phenylalanine aerobic, Model - Scenario - Phenylalanine anaerobic

Snapshots: No snapshots

Organisms: Aromatoleum aromaticum : EbN1T (wild-type / wild-type)

SOPs: No SOPs

Data files: EbN1 fastq 3HBz, EbN1 fastq 4HPP, EbN1 fastq Ac, EbN1 fastq Bz, EbN1 fastq Phe

Snapshots: No snapshots

Organisms: Aromatoleum aromaticum : EbN1T (wild-type / wild-type)

SOPs: No SOPs

Data files: Aromatoleum aromaticum EbN1 chromosome, complet..., Aromatoleum aromaticum EbN1 plasmid1, complete ..., Aromatoleum aromaticum EbN1 plasmid2, complete ...

Snapshots: No snapshots

Organisms: No organisms

Models: No Models

SOPs: Experimental protocol, R-script for scRNA-Seq analysis of in vivo "ind...

Data files: No Data files

Snapshots: No snapshots

Organisms: No organisms

Models: Data and Jupyter notebooks for our analysis on ..., Data and Jupyter notebooks for our analysis on ..., R script for scSynO usage of the Allen Brain At..., R script to generate the preprocessing input fo..., Unix script for the kallisto bustools processin...

SOPs: No SOPs

Data files: Schematic overview of sc-SynO, sc-SynO use case 1: cardiac glial cell identifi..., sc-SynO use case 2: proliferative cardiomyocyte...

Snapshots: No snapshots

Organisms: No organisms

Models: No Models

SOPs: No SOPs

Data files: 1 hidden item

Snapshots: No snapshots

Organisms: No organisms

Models: No Models

SOPs: Nuclei isolation for single nuclei RNA-seq, R-Script for integrative clusteranalysis of sin...

Data files: CD34 expression across clusters, FeaturePlot of cardiomyocyte markers, Figures Galow et al., Top100 transcripts, number of cells per cluster, top10 marker for cell clusters

Snapshots: No snapshots