ch200109_s1
Chemostat 200109
Chemostat 200109
20 January 2009
chemostat
anaerobic, glucose pulse with heat exchanger, pH 5
Maksim Zakhartsev
Not specified
ch200109_s1
29 January 2009
Not specified
Maksim Zakhartsev
Not specified
culture age = 212 h
Whole cell
Creators and Submitter
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Created: 16th Oct 2012 at 11:59
Last updated: 16th Oct 2012 at 12:06
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Projects: MOSES, ExtremoPharm, ZucAt, GenoSysFat, DigiSal, EraCoBiotech 2 nd call proposal preparation, FAIRDOM & LiSyM & de.NBI Data Structuring Training
Institutions: University of Stuttgart, University of Hohenheim, Norwegian University of Life Sciences, Norwegian University of Science and Technology
https://orcid.org/0000-0002-7973-9902
I've become a SysMO DB PAL for MOSES project in 2007 being a post-doc in lab of Prof. Matthias Reuss at University of Stuttgart. In the MOSES project, our major efforts were in the experimental data acquisition for dynamic model of primary carbon and anaerobic energy metabolism in yeast. The model implements prediction of perturbations of two types: glucose pulse and temperature jump. We implement “stimulus-response” methodology for the unraveling the dynamic structure of the network and to ...
SysMO is a European transnational funding and research initiative on "Systems Biology of Microorganisms".
The goal pursued by SysMO was to record and describe the dynamic molecular processes going on in unicellular microorganisms in a comprehensive way and to present these processes in the form of computerized mathematical models.
Systems biology will raise biomedical and biotechnological research to a new quality level and contribute markedly to progress in understanding. Pooling European research ...
Projects: BaCell-SysMO, COSMIC, SUMO, KOSMOBAC, SysMO-LAB, PSYSMO, SCaRAB, MOSES, TRANSLUCENT, STREAM, SulfoSys, SysMO DB, SysMO Funders, SilicoTryp, Noisy-Strep
Web page: http://sysmo.net/
MOSES (Micro Organism Systems biology: Energy and Saccharomyces cerevisiae) develops a new Systems Biology approach, which is called 'domino systems biology'. It uses this to unravel the role of cellular free energy ('ATP') in the control and regulation of cell function. MOSES operates though continuous iterations between partner groups through a new systems-biology driven data-management workflow. MOSES also tries to serve as a substrate for three or more other SYSMO programs.
Programme: SysMO
Public web page: http://www.moses.sys-bio.net/
Data integration is an essential part of Systems Biology. Scientists need to combine different sources of information in order to model biological systems, and relate those models to available experimental data for validation. Currently, only a small fraction of the data and models produced during Systems Biology investigations are deposited for reuse by the community, and only a smaller fraction of that data is standards compliant, semantic content. By embedding semantic technologies into familiar ...
Submitter: Olga Krebs
Studies: Creating Templates for Proteomics, Creating Templates for Transcriptomics, Creating template for metabolomics data
Assays: Affy Transcriptomics Templates, Chip-chip Excel Template, General Transcriptomics Templates, Metabolomics Master Template, NimbleGen Transcriptomics Templates, Proteomics Template (gel electrophoresis), Proteomics Templates (Mass spectrometry), RT-PCR Excel Template, Standard-based Excel template for metabolomics data
These templates can be used for a selection of metabolomics data types. There is a MASTER template for general use and adaptation as well as several more specific templates for particular types of experiment (e.g. HPLC), or specific assay types (e.g glucose pulse)
Submitter: Olga Krebs
Investigation: Creating data sheet template for 'omics data
Assays: Metabolomics Master Template, Standard-based Excel template for metabolomics data
Dear SEEK users, this Assay is just an example Excel sheet for intracellular metabolites concentration measurements performed using cell culture growing in chemostat
Submitter: Olga Krebs
Assay type: Metabolite Profiling
Technology type: Mass Spectrometry
Investigation: Creating data sheet template for 'omics data
Submitter: Maksim Zakhartsev
Provider Name: Not specified
Provider's strain ID: Not specified
Organism: Saccharomyces cerevisiae
Genotypes: del ura3;del his3;del leu2;del trp1;del mal2-8c;del suc2
Phenotypes: no adenylate cyclase activity
Comment: Not specified
Taxonomy URI: http://purl.obolibrary.org/obo/NCBITaxon_4932
Synonyms: yeast, lager beer yeast, brewer's yeast, baker's yeast
Sample type representing the old BioSample model available to SysMO and VirtualLiver
Sample ID or name (String) *, Cell culture name (String) *, Cell culture lab identifier (String) , Cell culture start date (Date) , Cell culture growth type (Controlled Vocabulary - SysMO Cell Culture Growth Type) , Cell culture comment (Text) , Cell culture provider name (String) , Cell culture provider identifier (String) , Cell culture strain (Registered Strain) *, Sample lab identifier (String) *, Sampling date (Date) , Age at sampling (Integer) , Sample provider name (String) , Sample provider identifier (String) , Sample comment (Text) , Sample organism part (Controlled Vocabulary - SysMO Sample Organism Part)
Not specified
