Originally submitted model file for PLaSMo accession ID PLM_9, version 1
SEEK ID: https://fairdomhub.org/models/499?version=1
1 item is associated with this Model:Organism: Not specified
Model type: Not specified
Model format: SBML
Execution or visualisation environment: Not specified
Model image: No image specified
Description: Originally submitted model file for PLaSMo accession ID PLM_9, version 1
SEEK ID: https://fairdomhub.org/models/499
- Millar, Andrew (ex-PlaSMo models)
- AuxSim - PLM_27
- Wilczek photothermal Science - PLM_48
- Sorokina2011_Ostreo_starch - PLM_44
- Salazar2009_FloweringPhotoperiod - PLM_9
- Salazar2009_FloweringPhotoperiod - PLM_9, version 1
- ZIP archive of Matlab model files for the models described in the paper, PLM_9_ 1
- Figure 1 of the paper, with a cartoon of the model. Model3 is provided as SBML. This is the sum of model 1(b) and model 2(b) shown in the cartoon., PLM_9_ 1
- Salazar2009_FloweringPhotoperiod - PLM_9, version 1, SUBMITTED
- Salazar2009_FloweringPhotoperiod - PLM_9, version 1, SIMPLIFIED
- Salazar2009_FloweringPhotoperiod - PLM_9, version 2
- Salazar2009_FloweringPhotoperiod - PLM_9, version 1
- P2012_AJMv2_NoABA - PLM_69
- OK MEP pathway 2013 - PLM_72
- Locke2006_CircadianClock_tanh - PLM_10
- Locke2005_CircadianClock_tanh - PLM_8
- DomijanTS_AtClock2011 - PLM_50
- AuxSim full - PLM_30
- Arabidopsis clock model P2011, graphical diagram - PLM_1045
- At_Pokh2011_LD_degr_Op1Ap3.xml - PLM_67
- At_Pokh2011v6_plasmo_ltdParams.xml - PLM_68
- Arabidopsis_clock_P2012 - PLM_70
- Arabidopsis_clock_P2011 - PLM_64
- Arabidopsis clock models P2011.1.2 and P2011.2.1 - PLM_71
- Arabidopsis clock model P2011.6.1 - PLM_1044
- Arabidopsis clock model P2011.5.1 - PLM_1043
- Arabidopsis clock model P2011.4.1 - PLM_1042
- Arabidopsis clock model P2011.3.1 - PLM_1041
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Created: 10th Jan 2019 at 16:51
Last updated: 22nd Jan 2019 at 17:21

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Version 1 (earliest) Created 10th Jan 2019 at 16:51 by BioData SynthSys
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Projects: Millar group, TiMet, PHYTOCAL: Phytochrome Control of Resource Allocation and Growth in Arabidopsis and in Brassicaceae crops, POP - the Parameter Optimisation Problem, Regulation of flowering time in natural conditions, PlaSMo model repository
Institutions: University of Edinburgh

Projects: PlaSMo model repository
Institutions: University of Edinburgh
SynthSys is the University of Edinburgh's research organisation in interdisciplinary, Synthetic and Systems Biology, founded in 2012 as the successor to the Centre for Systems Biology at Edinburgh (CSBE).
Projects: Millar group, PHYTOCAL: Phytochrome Control of Resource Allocation and Growth in Arabidopsis and in Brassicaceae crops, TiMet, POP - the Parameter Optimisation Problem, Regulation of flowering time in natural conditions, PlaSMo model repository
Web page: http://www.synthsys.ed.ac.uk
What is PlaSMo? PlaSMo stands for Plant Systems-biology Modelling Ensuring the achievements of yesterday's Mathematical Modellers will be available for the Systems Biologists of tomorrow.
Our aims
To identify plant mathematical models useful to the UK plant systems biology community, which are currently in a variety of legacy formats and in danger of being lost To represent these models in a declarative XML-based format, which is closer to the systems biology standard SBML To evaluate the behaviour ...
Programme: SynthSys
Public web page: Not specified
Organisms: Arabidopsis thaliana, Ostreococcus tauri
Collection of models submitted to PLaSMo by Andrew Millar and automatically transferred to FAIRDOM Hub.
Submitter: BioData SynthSys
Studies: Arabidopsis clock model P2011, graphical diagram - PLM_1045, Arabidopsis clock model P2011.3.1 - PLM_1041, Arabidopsis clock model P2011.4.1 - PLM_1042, Arabidopsis clock model P2011.5.1 - PLM_1043, Arabidopsis clock model P2011.6.1 - PLM_1044, Arabidopsis clock models P2011.1.2 and P2011.2.1 - PLM_71, Arabidopsis_clock_P2011 - PLM_64, Arabidopsis_clock_P2012 - PLM_70, At_Pokh2011_LD_degr_Op1Ap3.xml - PLM_67, At_Pokh2011v6_plasmo_ltdParams.xml - PLM_68, AuxSim - PLM_27, AuxSim full - PLM_30, DomijanTS_AtClock2011 - PLM_50, Locke2005_CircadianClock_tanh - PLM_8, Locke2006_CircadianClock_tanh - PLM_10, OK MEP pathway 2013 - PLM_72, P2012_AJMv2_NoABA - PLM_69, Salazar2009_FloweringPhotoperiod - PLM_9, Sorokina2011_Ostreo_starch - PLM_44, Wilczek photothermal Science - PLM_48
Assays: Arabidopsis clock model P2011, graphical diagram - PLM_1045, version 1, Arabidopsis clock model P2011.1.2 - PLM_71, version 1, Arabidopsis clock model P2011.2.1 - PLM_71, version 2, Arabidopsis clock model P2011.3.1 - PLM_1041, version 1, Arabidopsis clock model P2011.4.1 - PLM_1042, version 1, Arabidopsis clock model P2011.5.1 - PLM_1043, version 1, Arabidopsis clock model P2011.6.1 - PLM_1044, version 1, Arabidopsis_clock_P2011 - PLM_64, version 1, Arabidopsis_clock_P2011 - PLM_64, version 2, Arabidopsis_clock_P2011 - PLM_64, version 3, Arabidopsis_clock_P2011 - PLM_64, version 4, Arabidopsis_clock_P2012 - PLM_70, version 1, Arabidopsis_clock_P2012 - PLM_70, version 2, At_Pokh2011_LD_degr_Op1Ap3.xml - PLM_67, version 1, At_Pokh2011_LD_degr_Op1Ap3.xml - PLM_67, version 2, At_Pokh2011_LD_degr_Op1Ap3.xml - PLM_67, version 3, At_Pokh2011_LD_degr_Op1Ap3.xml - PLM_67, version 4, At_Pokh2011_LD_degr_Op1Ap3.xml - PLM_67, version 5, At_Pokh2011_LD_degr_Op1Ap3.xml - PLM_67, version 6, At_Pokh2011v6_plasmo_ltdParams.xml - PLM_68, version 1, AuxSim - PLM_27, version 1, AuxSim full - PLM_30, version 1, DomijanTS_AtClock2011 - PLM_50, version 1, DomijanTS_AtClock2011 - PLM_50, version 2, Locke2005_CircadianClock_tanh - PLM_8, version 1, Locke2006_CircadianClock_tanh - PLM_10, version 1, OK MEP pathway 2013 - PLM_72, version 1, P2012_AJMv2_NoABA - PLM_69, version 1, P2012_AJMv2_NoABA - PLM_69, version 2, Salazar2009_FloweringPhotoperiod - PLM_9, version 1, Salazar2009_FloweringPhotoperiod - PLM_9, version 2, Sorokina2011_Ostreo_starch - PLM_44, version 1, Wilczek photothermal Science - PLM_48, version 1, Wilczek photothermal Science - PLM_48, version 2
Snapshots: No snapshots
The model shows how the CONSTANS gene and protein in Arabidopsis thaliana forms a day-length sensor. It corresponds to Model 3 in the publication of Salazar et al. 2009. Matlab versions of all the models in the paper are attached to this record as a ZIP archive, as are all the data waveforms curated from the literature to constrain the model. Further information may be available via links from the authors web site (www.amillar.org). Simulation notes for SBML version of Model3 from Salazar et al., ...
Submitter: BioData SynthSys
Investigation: Millar, Andrew (ex-PlaSMo models)
Assays: Salazar2009_FloweringPhotoperiod - PLM_9, version 1, Salazar2009_FloweringPhotoperiod - PLM_9, version 2
Snapshots: No snapshots
The model shows how the CONSTANS gene and protein in Arabidopsis thaliana forms a day-length sensor. It corresponds to Model 3 in the publication of Salazar et al. 2009. Matlab versions of all the models in the paper are attached to this record as a ZIP archive, as are all the data waveforms curated from the literature to constrain the model. Further information may be available via links from the authors web site (www.amillar.org). Simulation notes for SBML version of Model3 from Salazar et al., ...
Submitter: BioData SynthSys
Biological problem addressed: Gene Regulatory Network
Investigation: Millar, Andrew (ex-PlaSMo models)
Organisms: No organisms
Models: Salazar2009_FloweringPhotoperiod - PLM_9, versi..., Salazar2009_FloweringPhotoperiod - PLM_9, versi...
SOPs: No SOPs
Data files: Figure 1 of the paper, with a cartoon of the mo..., ZIP archive of Matlab model files for the model...
Snapshots: No snapshots