Data files

4126 Data files visible to you, out of a total of 6170

Local sensitivity analysis based on 40 samples - tab seperated file

MycoSynVac - Engineering Mycoplasma pneumoniae as a broad-spectrum animal vaccine

Tab seperated file containing the raw output of the local sensitivity analysis based on 40 samples (based on 1000x sampled metabolite values) from the MEAN and SD of the metabolite measurements. Sensitivity analysis is based on the flux through PFK as objective and as proxy for flux through glycolysis. Data can be plotted using the R script "plotLocalGlobalSensitivity1.5.R" associated to the same assay.

Creators: None

Submitter: Niels Zondervan

Investigations: Modelling of M. pneumoniae metabolism

Studies: Core Model predictions

Assays: Metabolic control analysis (local and global)

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Created: 10th Jan 2019 at 12:36, Last updated: 20th Nov 2019 at 17:06

Fig3: NAMN formation w/ and w/o ATP in WT NAMPT

NAMPT affinity

No description specified

Creator: Dorothee Houry

Submitter: Dorothee Houry

Investigations: 1 hidden item

Studies: Manuscript: structural determinants of substrat...

Assays: FIGURE 3: ATP is essential for NAMN formation b...

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Created: 22nd Oct 2019 at 15:56, Last updated: 13th Nov 2019 at 16:08

NMN and NAMN formation w/ and w/o ATP in Δ42-51 NAMPT

NAMPT affinity

No description specified

Creator: Dorothee Houry

Submitter: Dorothee Houry

Investigations: 1 hidden item

Studies: Manuscript: structural determinants of substrat...

Assays: FIGURE 5: The deletion of the β1-β2 loop does n...

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Created: 22nd Oct 2019 at 15:59, Last updated: 13th Nov 2019 at 16:08

SAXS raw data of WT and Δ42-51 NAMPT w/ Nam, NA, PRPP or as apoenzyme

NAMPT affinity

No description specified

Creators: Dorothee Houry, Arne Raasakka, Petri Kursula

Submitter: Dorothee Houry

Investigations: 1 hidden item

Studies: Manuscript: structural determinants of substrat...

Assays: FIGURE 6: SAXS analysis of WT and Δ42-51 NAMPT.

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Created: 22nd Oct 2019 at 16:05, Last updated: 13th Nov 2019 at 16:08

Installation Instructions

Simulation Foundries

Follow the instructions in this file to get the necessary software packages to run the Simulation Foundry Version 1.5.

Creator: Gudrun Gygli

Submitter: Gudrun Gygli

Investigations: 1 hidden item

Studies: Simulation Foundry for Methanol-Water Mixtures

Assays: Preparation

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Created: 24th Oct 2019 at 09:15, Last updated: 7th Nov 2019 at 12:28

MESI-STRAT Newsletter June 2019

MESI-STRAT

(Show All)

First MESI-STRAT Newsletter June 2019

Creators: Petra Engele, Kathrin Thedieck, Tobias Anzeneder, Janina Leyk

Submitter: Petra Engele

Investigations: 1 hidden item

Studies: 1 hidden item

Assays: 1 hidden item

Created: 22nd Aug 2019 at 08:28, Last updated: 22nd Aug 2019 at 11:21

Simulation values, senescence

Outreach - Simulation of cellular senescence using an agent based modelling approach

Small set of values for entering into NetLogo Simulation

Creator: Hannah O'Keefe

Submitter: Hannah O'Keefe

Investigations: 2 hidden items

Studies: 2 hidden items

Assays: 2 hidden items

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Created: 5th Aug 2019 at 11:58, Last updated: 22nd Aug 2019 at 09:44

Abstract booklet of the Multicellular Mini-Symposium at ECMTB 2014 in Gothenburgh

COMBINE Multicellular Modelling

This mini-symposium, colocated at the ECMTB in Gothenburg, presents the state-of-the-art in computational methods for multicellular systems biology. It brings together developers and users of this software to identify common approaches and future challenges concerning multiscale integration, model specification, model exchange, scalability, workflow management as well as compliance to standards and guidelines. The session thus aims to provide an overview of the available modeling and simulation ...

Creator: Walter de Back, TU Dresden

Submitter: Lutz Brusch

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

Created: 18th Aug 2019 at 11:10

Sso PGK in absence of recycling system, 31P NMR data

SulfoSys

No description specified

Creators: Theresa Kouril, Jacky Snoep

Submitters: Jacky Snoep, Theresa Kouril

Investigations: Phosphoglycerate kinase acts as a futile cycle ...

Studies: PGK-70C

Assays: PGK 70 data

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Created: 28th Sep 2017 at 11:27, Last updated: 5th Aug 2019 at 13:58

Metformin Kinetics (false)

Outreach - Senescence RStudio-Shiny application

Very simple unrealistic values for Metformin kinetics (Km). For use in a simple graphical model.

Creator: Hannah O'Keefe

Submitter: Hannah O'Keefe

Investigations: 1 hidden item

Studies: 1 hidden item

Assays: 1 hidden item

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Created: 29th Jul 2019 at 13:13, Last updated: 30th Jul 2019 at 10:34

Fisetin Kinetics (false)

Outreach - Senescence RStudio-Shiny application

Very simple unrealistic values for Fisetin kinetics (Km). For use in a simple graphical model.

Creator: Hannah O'Keefe

Submitter: Hannah O'Keefe

Investigations: 1 hidden item

Studies: 1 hidden item

Assays: 1 hidden item

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Created: 29th Jul 2019 at 13:13, Last updated: 30th Jul 2019 at 09:22

MOA_Multiomics-Analysis_Phenodata-n-MIAPPE

MOA - Multiomics analysis of potato response to Potato virus Y (PVY) infection

Master table describing all the samples included in MOA Investigation; studies are descrubed using MIAPPE (Minimum Information About a Plant Phenotyping Experiment).

Creators: None

Submitter: Ziva Ramsak

Investigations: MOA - Multiomics analysis of potato response to...

Studies: MOA2010-05, MOA2013-12

Assays: Degradomics, Disease symptoms, Hormone concentrations, Pathogen abundance, Photosynthetic activity, Proteomics, Transcriptomics (microarrays), Transcriptomics (qPCR), sRNAomics (bioinformatics), sRNAomics (qPCR), sRNAomics (sRNA-Seq)