ConnectingTubule_SPADANReactionsTable

Version 1

Biochemical Reaction Networks Biochemical Reaction Networks transform static protein-protein interactions (PPI) network into dynamic, mechanistic models by decomposing each interaction into underlying molecular events like phosphorylation and complex formation. Using SPADAN toolbox (DOI:10.1093/bioinformatics/btad079), we expands PPI network into biochemical reactions network.

Ordinary Differential Equation Model Equations Kinetic descriptions of biochemical reactions related to each renal cell type are automatically generated using the SPADAN toolbox (DOI:10.1093/bioinformatics/btad079). For each reaction, rate equations follow the mass action law, producing a system of ODEs that captures temporal dynamics.