OptKnock SOP for Redesigning Butanol Producing Strain of E.coli. Version 1
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Matlab script that reproduces the model redesign results outlined in RobOKoD: microbial strain design for (over)production of target compounds (http://fairdomhub.org/publications/236) for OptKnock.
SEEK ID: https://fairdomhub.org/sops/229?version=1
Filename:
OptKnock_SOP.zip
Format: Zip file
Size: 35.3 KB
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Views: 1563 Downloads: 38
Created: 3rd Jun 2015 at 14:20
Last updated: 8th Dec 2015 at 15:05
Last used: 22nd Jun 2018 at 20:45
AttributionsNone
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Projects: SysMO DB, Whole body modelling of glucose metabolism in malaria patients, Manchester Institute for Biotechnology, FAIRDOM, ICYSB 2015 - International Practical Course in Systems Biology, GenoSysFat, DigiSal, FAIRDOM user meeting
Institutions: School of Computer Science, University of Manchester, Manchester Centre for Integrative Systems Biology, University of Manchester
orcid.org/0000-0003-4958-0184
Interested in systems + synthetic biology, biotechnology, mountaineering, swimming, running, and the occasional cup of tea. Once diagnosed as an ENFP.
Programme: Independent Projects
Public web page: Not specified
OptKnock algorithm was used as part of a study in RobOKoD: microbial strain design for (over)production of target compounds. (http://fairdomhub.org/publications/236). It was used to generate a strain of e.coli for producing butanol, that was then compared to an experimental strain.
Contributor: Natalie Stanford
Biological problem addressed: Model Analysis Type
Snapshots: No snapshots
