Nested autoinhibitory feedbacks alter the resistance of homeostatic adaptive biochemical networks

Abstract:

Negative feedback control is a ubiquitous feature of biochemical systems, as is time delay between a signal and its response. Negative feedback in conjunction with time delay can lead to oscillations. In a cellular context, it might be beneficial to mitigate oscillatory behaviour to avoid recurring stress situations. This can be achieved by increasing the distance between the parameters of the system and certain thresholds, beyond which oscillations occur. This distance has been termed resistance. Here, we prove that in a generic three-dimensional negative feedback system the resistance of the system is modified by nested autoinhibitory feedbacks. Our system features negative feedbacks through both input-inhibition as well as output-activation, a signalling component with mass conservation and perfect adaptation. We show that these features render the system applicable to biological data, exemplified by the high osmolarity glycerol system in yeast and the mammalian p53 system. Output-activation is better supported by data than input-inhibition and also shows distinguished properties with respect to the system's stimulus. Our general approach might be useful in designing synthetic systems in which oscillations can be tuned by synthetic autoinhibitory feedbacks.

SEEK ID: https://fairdomhub.org/publications/238

PubMed ID: 24307567

Projects: ICYSB 2015 - International Practical Course in Systems Biology

Publication type: Not specified

Journal: J R Soc Interface

Citation: J R Soc Interface. 2013 Dec 4;11(91):20130971. doi: 10.1098/rsif.2013.0971. Print 2014 Feb 6.

Date Published: No date defined

Registered Mode: Not specified

Authors: J. Schaber, A. Lapytsko, D. Flockerzi

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Created: 3rd Jun 2015 at 13:15

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