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Programme
Disease Maps277
Independent Projects12
de.NBI Systems Biology Service Center (de.NBI-SysBio)10
FAIRDOM8
COMBINE (Computational Modeling in Biology Network)8
Covid-19 disease map - Bioinformatics analysis and computational modelling8
SysMO7
HUMET7
LiSyM - Systems Medicine of the Liver6
German Association for Medical Informatics, Biometry and Epidemiology (GMDS)6
nfdi4health - German National Research Data Infrastructure for Personal Health Data6
e:med4
FAIR Biocatalysis4
e:Bio3
Model repository for M4 (Make Me My Model) clients of ISBE3
Era CoBioTech3
ERNEST - European Research Network on Signal Transduction3
Drug development for neglected parasitic diseases3
C19DM-Neo4j3
Macrophage logical modeling3
ERASysAPP2
MS_DILI2
EU Projects2
VHP Programme2
NIBSys1
Druglogics1
Innate immunity1
BlueBio ERA-NET COFUND1
Cancer drug discovery preclinical research1
DFG founded projects1
iPlacenta: A European Union Horizon 2020 innovative training network (ITN)1
COST ACTION CA21111 - OneHealthdrugs (One Health drugs against parasitic vector borne diseases in Europe and beyond) 1
More...
Project
COVID-19 Disease Map277
Kinetics on the move - Workshop 201610
Covid-19 Interferon pathway modelling and analysis8
FAIRDOM7
HUMET Startup7
ModeleXchange initiative7
SDBV/HITS7
GMDS Project Group "FAIRe Dateninfrastrukturen für die Biomedizinische Informatik"6
COVID-19 related studies and tools in Germany6
nfdi4health - German National Research Data Infrastructure for Personal Health Data6
Example use cases5
FAIRDOM & LiSyM & de.NBI Data Structuring Training5
LiSyM Core Infrastructure and Management (LiSyM-PD)4
FAIRDOM user meeting4
COMBINE Multicellular Modelling4
INCOME4
EnzymeML4
FAIRDOM Community Workers4
SysMO DB3
de.NBI-SysBio3
Early Metabolic Injury (LiSyM-EMI - Pillar I)3
Chronic Liver Disease Progression (LiSyM-DP - Pillar II)3
Regeneration and Repair in Acute-on-Chronic Liver Failure (LiSyM-ACLF - Pillar III)3
Liver Function Diagnostics (LiSyM-LiFuDi - Pillar IV)3
Model Guided Pharmacotherapy In Chronic Liver Disease (LiSyM-MGP)3
Multi-Scale Models for Personalized Liver Function Tests (LiSyM-MM-PLF)3
The Hedgehog Signalling Pathway (LiSyM-JGMMS)3
Molecular Steatosis - Imaging & Modeling (LiSyM-MSIM)3
SBEpo - Systems Biology of Erythropoietin3
EraCoBiotech 2 nd call proposal preparation3
ERNEST Mapping Group Pilot Study3
NMTrypI - New Medicines for Trypanosomatidic Infections3
C19DM-Neo4j3
SNAPPER: Synergistic Neurotoxicology APP for Environmental Regulation3
C19DM - Macrophage logical model3
BioCreative VII3
SysMO-LAB2
ICYSB 2015 - International Practical Course in Systems Biology2
Service to URV Tarragona, Spain with respect to their Safety Assessment of Endocrine Disrupting Chemicals model (Active NOW)2
MS_DILI2
MESI-STRAT2
BESTER2
PoLiMeR - Polymers in the Liver: Metabolism and Regulation2
MIX-UP2
Mechanism based modeling viral disease ( COVID-19 ) dynamics in human population2
Modelling COVID-19 epidemics2
CoVIDD - Coronavirus interactions in drug discovery - optimization and implementation2
SASKit: Senescence-Associated Systems diagnostics Kit for cancer and stroke2
CC-TOP2
SABIO-VIS2
MESI-STRAT Review2
VHP project2
MESI-Review 20242
EDITH (Ecosystem Digital Twins in Health) test project2
BaCell-SysMO1
COSMIC1
PSYSMO1
SulfoSys1
iRhythmics1
SYSTERACT1
ZucAt1
ErasysApp Funders1
EmPowerPutida1
Service to Milano-Bicocca with respect to their ATP-ROS model (Active NOW)1
Make Me My Model1
Service to University of Lisbon (Portugal) with respect to their CFTR maturation model (Active NOW)1
Service to LCSB (Luxembourg) with respect to ROS management in Parkinson’s disease and cancer model (Active NOW)1
Service to Universidade Católica Portugues with respect to their Molecular Insight into Autism Spectrum Disorder (ASD) model (Active NOW)1
Service to Slovenia with respect to their Protease signaling network in neurodegeneration model (Active NOW)1
Service to University of Duisburg- Essen (Germany): with respect to their The Yin-Yang of Metabolism; Endometatoxicity (YYME) model (Active NOW)1
Service to Sheffield University (UK): with respect to Mitochondrial perfect adaptation model (Active NOW)1
Service to Sanquin (Amsterdam): with respect to Modelling of acute and chronic inflammation (Prospective)1
Service to Munich (Germany): with respect toCharged peptide to charged membrane binding model (Prospective)1
MycoSynVac - Engineering Mycoplasma pneumoniae as a broad-spectrum animal vaccine1
Training Hunfeld1
Colosys1
Sustainable co-production1
Multiscale modelling of state transitions in the host-microbiome-brain network1
ROS detailed model for MSB manucript1
Rhodolive1
HOTSOLUTE1
TRALAMINOL1
Extremophiles metabolsim1
INDIE - Biotechnological production of sustainable indole1
OLCIR: Optimization of Lung Cancer Therapy with Ionizing Radiation1
NAD COMPARTMENTATION1
SCyCode The Autotrophy-Heterotrophy Switch in Cyanobacteria: Coherent Decision-Making at Multiple Regulatory Layers1
Stress granules1
AquaHealth (ERA-BlueBio)1
Standardization of enzyme-catalyzed reaction measurement1
Standardization of enzyme-catalyzed reaction modelling1
Mass spectrometry proteomics for biomarker discovery1
Molecular characterization and angiogenic properties of extracellular vesicles in healthy and preeclamptic amniotic fluid1
Thymidylate synthase dimer dissociation1
Boolean modeling of Parkinson disease map1
Overexpression of microRNAs miR-25-3p, miR-185-5p and miR-132-3p in Late Onset Fetal Growth Restriction, Validation of Results and Study of the Biochemical Pathways Involved1
SDBV ephemeral data exchanges1
The BeeProject1
Comparative Proteome Profile of Placental Sub-anatomical regions1
WG1 - Compound libraries coordination and integration of compound design1
WG2 - Integration of early phase studies and low environmental impact actions1
WG3 - Coordination of in vitro-to-in vivo translation of OneHealth leads and candidates1
WG4 - Integration of R&D process-environmental studies and translation in informed whitepaper1
WG5 - Promote dissemination1
WG6 - Promote the transfer of knowledge1
The deregulated interplay of complement system and antioxidant activity as a driver of adverse pregnancy outcomes1
Implementation of Nanopore Sequencing for Detection of Treatment Induced Transcriptomic and Epitranscriptomic Changes in Leukaemic Tumour Models1
DeepCurate1
More...
Institution
Luxembourg Centre for Systems Biomedicine (LCSB)16
Heidelberg Institute for Theoretical Studies (HITS gGmbH)10
University Maastricht9
National Institute for Infectious Diseases "L.Spallanzani"8
Ontario Institute for Cancer Research7
University of Bonn6
Institut Curie6
Institut Pasteur6
Norwegian University of Science and Technology5
University of Rostock5
University of Edinburgh5
Kinetics on the move Workshop at HITS5
European Institute for Systems Biology and Medicine5
Barcelona Supercomputing Center5
Harvard Medical School5
Institut Pasteur de Tunis5
Helmholtz Zentrum München / Institute of Experimental Genetics5
University of Heidelberg4
Universität Konstanz4
Earlham Institute4
Keio University4
The European Bioinformatics Institute < EMBL-EBI4
University of Rome Tor Vergata4
Swiss Institute of Bioinformatics4
Imperial College London3
University of Luxembourg3
University of Tübingen3
ICAHN Icahn School of Medicine at Mount Sinai3
Gladstone Institutes3
Policlinico Universitario Agostino Gemelli IRCCS3
University of Évry Val d'Essonne3
University of Pittsburgh3
Fundación Progreso y Salud3
Monash University3
Oregon Health & Science University (OHSU)3
University of Nebraska-Lincoln3
NYU Grossman School of Medicine3
Pacific Northwest National Laboratory3
Elsevier3
Auckland Bioengineering Institute2
Biomax Informatics AG2
Centre national de la Recherche Scientifique (CNRS)2
Hospital del Mar Research Institute (IMIM)2
INSERM2
KAUST2
Sanofi R&D2
Shanghai University2
Inria Saclay - Île-de-France2
Golestan University of Medical Sciences2
University of California, Los Angeles2
Ankara University2
CSIC Madrid1
Humboldt-Universität zu Berlin1
VU University Amsterdam1
University of Amsterdam1
Manchester Centre for Integrative Systems Biology, University of Manchester1
University of Newcastle1
Wageningen University & Research1
University of Manchester - Department of Computer Science1
European Molecular Biology Laboratory1
UNIBI: Bielefeld University1
FAIRDOM User meeting1
Centro de Investigación Príncipe Felipe1
University of Ulster1
geneXplain GmbH1
University Medical Center Hamburg - Eppendorf Hamburg1
Liverpool John Moores University1
University of Cambrige1
Bilkent University1
Infrastructure Systems Biology Europe1
University College London (UCL)1
ICB Helmholtz Center Munich1
Düzen Biological Sciences R&D and Production Company1
University of Leipzig - Institute for Medical Informatics, Statistics and Epidemiology (IMISE)1
University of Innsbruck1
Integrative BioInformatics Inc.1
CSIR-Institute of Genomics and Integrative Biology1
The International Clinical Research Center of St. Anne's University Hospital Brno1
Yenepoya University1
Riga Technical University1
American University of Sharjah1
Centre de Recherche en Cancerologie de Toulouse1
Centre for Research and Technology Hellas1
esqLABS GmbH1
Estonian Genome Centre, Institute of Genomics, University of Tartu1
Fundacion, Progreso y Salud1
German Center for Neurodegenerative Diseases (DZNE)1
Guy's and St Thomas' NHS Foundation Trust and King's College London1
Hasso-Plattner Institute/ TU Berlin1
IBM Research, Zurich1
Indraprastha Institute of Information Technology Delhi1
Institute for Globally Distributed Open Research and Education - IGDORE1
Mediterranean Institute for Life Sciences (MedILS)1
Morpho-Biomimicry research and innovation centre1
MRC-University of Glasgow Centre for Virus Research1
Paris Brain Institute / Inria1
Systems Biology Institute (SBI)1
Università Cattolica del Sacro Cuore1
University of Lisbon1
University of Florida1
University of Lyon1
University of Montpellier1
University of Rochester1
University of Surrey1
University of Western Australia1
US Environmental Protection Agency1
Biomathematica1
Institut de Recherche Saint Louis1
University of Lille1
BIOASTER1
Autonomous University of Madrid1
National Institute of Immunology1
Accelera1
Forman Christian College (a chartered university)1
University of the Witwatersrand1
Uppsala University1
Cardiff University1
National Institute of Standards and Technology1
Mansoura Faculty of Medicine1
Lorraine Research Laboratory in Computer Science and its Applications (LORIA)1
King AbdulAziz University1
Moredun Research Institute1
All India Institute of Medical Sciences, Kalyani1
Radboud University Medical Center1
Institute of Bioinfomratics1
Oregon State University1
University of Cape Town1
OROBIX Sarl1
ICESI University1
Shri Govindram Seksaria Institute of Technology and Science1
University of Barcelona1
Zanjan University of Medical Sciences1
New York University1
University of Würzburg1
University of Northampton1
Helmholtz Zentrum München1
Pondicherry University1
independent researcher1
University of Eastern Finland (UEF)1
National Institute of Informatics1
University of British Columbia1
Instituto de Investigación Sanitaria La Fe1
University of Applied Sciences Mittweida1
More...
Location
Germany55
United States37
France36
United Kingdom29
Italy18
Luxembourg17
Spain16
Netherlands11
India9
Canada8
Japan6
Switzerland5
Norway5
Tunisia5
Australia4
Türkiye4
Iran3
Saudi Arabia3
China2
New Zealand2
South Africa2
United Arab Emirates1
Austria1
Belgium1
Colombia1
Czechia1
Estonia1
Egypt1
Finland1
Greece1
Croatia1
Latvia1
Pakistan1
Sweden1
More...
Expertise
Curation55
Data Integration39
Systems Biology26
Bioinformatics23
Modelling23
Modeling21
Computational Systems Biology17
Data analysis14
Molecular Biology12
Mathematical modelling11
Data Management11
Network Analysis11
Biochemistry7
Databases6
Knowledge Management6
Genomics5
Transcriptomics5
Dynamic modelling5
Genetics4
Software Engineering4
Machine Learning4
Pathway Analysis4
Microbiology3
Cell biology3
Proteomics3
SBML3
Java3
Metabolic Engineering3
SBGN3
standards3
Immunology3
Network Visualization3
Biocuration3
Data mining3
Knowledge integration3
Constraint-based Modelling3
Parameter estimation3
Text Mining3
Virology2
Python2
Microarray analysis2
dynamics of biological networks2
semantics2
SBGN standard2
Data analysisMathematical modellingBioinformaticsSystems biology2
Systems Medicine2
Data curation2
Cancer research2
Neuroscience2
AI2
Deep Learning2
outreach2
Visualisation2
Network biology2
Editorial Committee2
Publication platform2
Curation of molecular interactions2
Disease Maps2
Dynamics and Control of Biological Networks2
Metabolic Networks2
Project Management2
Pathway Curation2
Mechanistic Modelling2
Distributed Systems2
Metabolomics1
Agent-based modelling1
R1
Information Retrieval1
Programming1
Data analysis
Mathematical modelling
Bioinformatics
Systems biology1
gene regulation1
Synthetic Biology1
protein-protein interactions1
Cell physiology1
Biotechnology1
computational structural biology1
molecular modeling1
Medical microbiology1
Computational modelling1
Liver1
Image analysis1
Epigenetics1
metabolism1
VREs1
Phytopathology1
Calcium signalling1
learning1
memory1
cooperativity1
Human-Computer Interaction1
Systems Biology Graphical Notation1
Lipids1
Nutrition1
promoters and anhancers1
signal transduction1
drug targets1
lipidomics1
Innate immunity1
Graphical Editors1
Visualization1
Pharmacokinetics1
Toxicology1
Plant biology1
GMP1
Pathways1
clinical chemistry1
protease inhibitors1
COVID-191
Biological knowledge managament1
ODE modeling1
Human physiology1
Immersive Analytics1
Literature mining1
Molecular Maps1
Complex human disease1
Boolean Models1
Executable disease networks1
Medicine1
Drug Curation1
Dissemination1
Funding1
Integration1
General support1
Simulation of protein-protein interactions1
Knowledge modelling1
Quantitative Biology1
Physical Chemistry1
Validation1
Ontology1
Analysis1
Computational Biology1
Data Modelling1
Kinetics1
Reaction Networks1
Rule-based Models1
Tracer Kinetics1
Collective Behaviour1
interoperability1
scholarly communications1
discourse analysis1
SARS-CoV 21
rare diseases1
GCP1
Genome-scale Metabolic Models1
Computer-aided drug design1
N-terminomics1
TAILS1
degradomics1
proteases1
protease substrate discovery1
MALT1 paracaspase in NFkB activtaion1
Interferon inactivation by proteases1
viral proteases1
More...
Tool
R20
Python18
SBML11
CellDesigner10
Cytoscape9
Matlab8
Databases7
Data Management6
Systems Biology6
Computational and theoretical biology5
pathvisio5
Molecular Biology4
Bioinformatics4
ODE4
Dynamic modelling4
SBGN4
wikipathways4
Data Integration4
SEEK4
Genomics3
Transcriptomics3
Cell designer3
Computational Systems Biology3
Molecular biology techniques (RNA/DNA/Protein)3
network theory3
Machine Learning3
SBGN-ED3
Knowledge Management3
Microbiology2
Genetics2
Cell and tissue culture2
Proteomics2
Java2
Workflows2
Ontologies2
linux2
Javascript2
Reactome2
Neo4J2
c++2
High Performance Computing2
Data Science2
SABIO-RK2
Jupyter2
libSBML2
cobrapy toolbox2
Shell scripting2
GINsim2
Cell Collective2
Newt Editor2
DisGeNET2
ODE Modelling2
Kinetic Modeling2
Biochemistry1
Biochemistry and protein analysis1
Cell biology1
Cytometry and fluorescent microscopy1
Genetic analysis1
Single Cell analysis1
Partial differential equations1
Agent-based modelling1
Copasi1
Web services1
Mathematica1
Chip-chip1
Ruby on Rails1
Spring1
MIRIAM1
SQL1
stimulus response experiments1
differential algebraic equations1
data modeling1
quantitative western blot analyses1
quantitative western blot analysis1
Stochastic models1
Deterministic models1
PDE1
Flux balance analysis1
BioMart1
model reduction1
Western blot analyses1
stochastic methods1
microbiology techniques1
Pathway Tools1
Grails web development framework1
SABIO-RK database1
semantic web1
RightField1
RNAseq1
COBRA toolbox1
Protege1
bash1
web development1
Statistics1
multi-state modelling1
MCell1
Boolean modeling1
yEd Graph Editor1
geneXplain platform1
BioUML1
SBGNViz1
cBioPortal1
PathwayMapper1
ChiBE1
Petri Nets1
Metabolic modelling1
jupyter notebooks1
Data2Dynamics1
AMICI1
PESTO1
NetworkX1
Protein2GO1
BioNetGen1
ProcessDB1
VANTED1
MetaCrop1
TEAMwISE1
NaviCell1
Literature mining1
Literature mining1
CaSQ1
SBGNML1
JSBML1
SBSCL1
InSilico1
Parameter estimation1
Text Mining1
constraint programming1
model checking1
Prolog1
yEd1
bridgedb1
OmniPath1
pypath1
omics analysis1
Constraint-based analysis1
Ordinary differential equations1
Multiscale modeling1
COBRApy1
Molecular docking and simulation1
TAILS1
PICS1
ATOMS1
Protease assays1
MALDI-TOF/TOF1
LC-MS/MS1
Animal modes1
More...
277
People found
Projects: COVID-19 Disease Map
Institutions: UNIBI: Bielefeld University
https://orcid.org/0000-0001-5977-798X
Scientific Project Manager at Luxembourg Centre for Systems Biomedicine, University of Luxembourg http://lcsb.uni.lu
Projects: COVID-19 Disease Map
Institutions: University of the Witwatersrand
Projects: COVID-19 Disease Map
Institutions: Centre for Research and Technology Hellas
Projects: COVID-19 Disease Map
Institutions: University of British Columbia
https://orcid.org/0000-0001-5844-2731
Professor Christopher Overall was appointed a Tier 1 Canada Research Chair in Protease Proteomics and Systems Biology (2001) and an Honorary Professor Albert-Ludwigs Universität Freiburg, Germany (2014–) after being a Senior Fellow of the Freiburg Institute of Advanced Studies, Albert-Ludwigs Universität Freiburg, Germany (2010–2013). He was inducted as a fellow into the Royal Society of Canada, Academy of Science in 2018. He is best known for his development of proteomic methodology for the ...
Projects: COVID-19 Disease Map
Institutions: German Center for Neurodegenerative Diseases (DZNE)
Projects: COVID-19 Disease Map
Institutions: independent researcher
https://orcid.org/0000-0002-3882-6073
Projects: COVID-19 Disease Map
Institutions: Pacific Northwest National Laboratory
Projects: COVID-19 Disease Map
Institutions: BIOASTER
Projects: COVID-19 Disease Map
Institutions: Fundacion, Progreso y Salud
Projects: COVID-19 Disease Map
Institutions: Integrative BioInformatics Inc.
https://orcid.org/0000-0001-7979-2386
Location: Mountain View, CA, USA
My research interest is in studying cellular and molecular pathways of COVID-19 disease.
Projects: COVID-19 Disease Map
Institutions: Gladstone Institutes
https://orcid.org/0000-0001-5706-2163
Bioinformatics core director at Gladstone Institutes. Executive director of the National Resource for Network Biology. Co-founder of WikiPathways. Co-developer of Cytoscape.
Projects: COVID-19 Disease Map
Institutions: Hospital del Mar Research Institute (IMIM)
https://orcid.org/0000-0003-1244-7654
Postdoctoral Researcher
Projects: Kinetics on the move - Workshop 2016, COVID-19 Disease Map, NMTrypI - New Medicines for Trypanosomatidic Infections, CoVIDD - Coronavirus interactions in drug discovery - optimization and implementation
Institutions: Kinetics on the move Workshop at HITS, Heidelberg Institute for Theoretical Studies (HITS gGmbH), University of Eastern Finland (UEF)
https://orcid.org/0000-0002-2801-8902
Projects: COVID-19 Disease Map
Institutions: Barcelona Supercomputing Center
https://orcid.org/0000-0002-7496-844X
Projects: COVID-19 Disease Map
Institutions: The European Bioinformatics Institute < EMBL-EBI
Projects: COVID-19 Disease Map
Institutions: ICESI University
Projects: COVID-19 Disease Map
Institutions: Institut Pasteur de Tunis
Projects: COVID-19 Disease Map
Institutions: University of Montpellier
https://orcid.org/0000-0001-6453-5707
Leader of Computational Systems Biology team at LPHI UMR 5235 CNRS and University of Montpellier
Projects: COVID-19 Disease Map
Institutions: Mansoura Faculty of Medicine
Projects: COVID-19 Disease Map
Institutions: University of Bonn
Projects: COVID-19 Disease Map
Institutions: INSERM
Projects: COVID-19 Disease Map
Institutions: University of Tübingen
https://orcid.org/0000-0003-3851-9978
Projects: SysMO-LAB, de.NBI-SysBio, Kinetics on the move - Workshop 2016, Example use cases, SBEpo - Systems Biology of Erythropoietin, FAIRDOM & LiSyM & de.NBI Data Structuring Training, FAIRDOM, EnzymeML, FAIRDOM Community Workers, GMDS Project Group "FAIRe Dateninfrastrukturen für die Biomedizinische Informatik", MIX-UP, COVID-19 Disease Map, ERNEST Mapping Group Pilot Study, CC-TOP, SABIO-VIS, SDBV/HITS
Institutions: Heidelberg Institute for Theoretical Studies (HITS gGmbH)
Within the de.NBI project my functions in the de.NBI-SysBio node comprise content curation, requirements elicitation, and community engagement for the users of biochemical reaction kinetics database SABIO-RK as well as of the data management platform SEEK.
Projects: COVID-19 Disease Map
Institutions: Fundación Progreso y Salud
https://orcid.org/0000-0003-4314-7208
Projects: COVID-19 Disease Map
Institutions: Gladstone Institutes
Projects: COVID-19 Disease Map
Institutions: IBM Research, Zurich
