The major theme of the research in my laboratory is bacterial gene regulation. We are interested in signal perception mechanisms (in particular oxygen); signal transduction (ligand induced protein confromational changes); interaction of transcription factors with the core transcription machinery; interactions between transcription factors to integrate multiple signals; and the influence of promoter architectures on these events. We are also interested in aome aspects of post-transcriptional regulation and in the the functions of 'unknown' genes that are components of well-characterised regulons. We apply a range of techniques from global time-resolved and staedy-state transcriptomics of carefully controlled chemostat cultures to isolation of relevant transcription factors to investigate the molecular details of their interactions with their signal molecules, with specific promoters, with other transcription factors and with RNA polymerase.
SEEK ID: https://fairdomhub.org/people/29
Location: United Kingdom
ORCID: Not specified
Joined: 25th Apr 2009
Related items
SysMO is a European transnational funding and research initiative on "Systems Biology of Microorganisms".
The goal pursued by SysMO was to record and describe the dynamic molecular processes going on in unicellular microorganisms in a comprehensive way and to present these processes in the form of computerized mathematical models.
Systems biology will raise biomedical and biotechnological research to a new quality level and contribute markedly to progress in understanding. Pooling European research ...
Projects: BaCell-SysMO, COSMIC, SUMO, KOSMOBAC, SysMO-LAB, PSYSMO, SCaRAB, MOSES, TRANSLUCENT, STREAM, SulfoSys, SysMO DB, SysMO Funders, SilicoTryp, Noisy-Strep
Web page: http://sysmo.net/
"Systems Understanding of Microbial Oxygen responses" (SUMO) investigates how Escherichia coli senses oxygen, or the associated changes in oxidation/reduction balance, via the Fnr and ArcA proteins, how these systems interact with other regulatory systems, and how the redox response of an E. coli population is generated from the responses of single cells. There are five sub-projects to determine system properties and behaviour and three sub-projects to employ different and complementary modelling ...
Programme: SysMO
Public web page: http://www.sysmo.net/index.php?index=55
Organisms: Escherichia coli, Escherichia coli K-12
This assay uses a dual-wavelength spectrophotometer to quantify cytochromes present in the E. coli respiratory chain.
Creators: Alison Graham, Robert Poole, Jeff Green
Submitter: Alison Graham
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
This is a well-established, classical genetic method of constructing chromosomal monolysogenic fusions to a promoterless lacZ gene.
Creators: Alison Graham, Jeff Green, Robert Poole
Submitter: Alison Graham
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Abstract (Expand)
Authors: , , , , , , S. Kunz, , , , , ,
Date Published: 7th May 2014
Publication Type: Not specified
PubMed ID: 24797925
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Authors: , , , S. Coakley, , ,
Date Published: 24th Apr 2014
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PubMed ID: 24763195
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Authors: , Andrea Ocone, Melanie R Stapleton, Simon Hall, Eleanor W Trotter, , ,
Date Published: 8th Aug 2012
Publication Type: Not specified
PubMed ID: 22870390
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Authors: , Salem Adra, Mesude Bicak, Shawn Chin, Simon Coakley, , , Chris Greenough, Duncan Jackson, Mariam Kiran, Sheila MacNeil, , Phil McMinn, Mark Pogson, , Eva Qwarnstrom, Francis Ratnieks, , Rod Smallwood, Tao Sun, David Worth
Date Published: 2012
Publication Type: Not specified
PubMed ID: 22052476
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Authors: Eleanor W Trotter, , Andrea M Hounslow, C Jeremy Craven, Michael P Williamson, , ,
Date Published: 27th Sep 2011
Publication Type: Not specified
PubMed ID: 21980479
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Authors: , , , Eleanor W Trotter, H M Shahzad Asif, Guido Sanguinetti, , ,
Date Published: 22nd Jan 2011
Publication Type: Not specified
PubMed ID: 21252224
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Authors: H M Shahzad Asif, , , Neil D Lawrence, Magnus Rattray,
Date Published: 24th Aug 2010
Publication Type: Not specified
PubMed ID: 20739311
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Authors: Adrian J Jervis, Jason C Crack, Gaye White, Peter J Artymiuk, Myles R Cheesman, Andrew J Thomson, Nick E Le Brun,
Date Published: 4th Mar 2009
Publication Type: Not specified
PubMed ID: 19261852
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Authors: , Jason C Crack, Andrew J Thomson, Nick E LeBrun
Date Published: 24th Feb 2009
Publication Type: Not specified
PubMed ID: 19246238
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