Work in my laboratory is focussed on microbial physiology - the study of how bacteria and other microorganisms work. Although rooted in the tradition of bacterial growth and intermediary metabolism, microbial physiology now embraces molecular biology, genetics, biochemistry, and indeed any discipline that can shed light on bacterial function. Much of our experimental work is conducted with Escherichia coli, the pre-eminent ‘model’ organism with unrivalled ease of genetic and physiological manipulation. We are also work on its close relation, Salmonella (an intracellular pathogen and cause of enteritis), Campylobacter jejuni (the most common cause of food-borne disease), as well as Mycobacterium and Neisseria species. Special foci at present are bacterial respiratory chains and haemoglobins, nitrosative stress tolerance in bacteria, the biochemistry of CO interactions and oxygen metabolism.
The approaches used to study these problems range from molecular genetics, through microbial biochemistry and biophysics, to physiology and the properties of microbial populations in vitro and in vivo. Consequently, the tools we use are diverse; they include manipulations in vitro and in vivo of nucleic acids, bacterial molecular genetics (e.g. microarray technology, transposon-mediated and site-directed mutagenesis, gene and operon fusions), protein purification, immunochemical methods and characterisation using optical (dual- and multi-wavelength spectrophotometry) tools.
SEEK ID: https://fairdomhub.org/people/34
Location: United Kingdom
ORCID: Not specified
Joined: 12th May 2009
Expertise: Escherichia coli, Microbiology Biochemistry Molecular biology Genetics Enzymology Synthetic biology Regulatory metabolic networks, Bacterial Cell Biology, Cellular biology of metals
Tools: Biochemistry and protein analysis, Transcriptomics, Spectroscopy and structural analysis, molecular biological techniques (RNA/DNA techniques
Related items
- Programmes (1)
- Projects (1)
- Institutions (1)
- Data files (0+1)
- SOPs (2)
- Publications (6)
- Presentations (1)
SysMO is a European transnational funding and research initiative on "Systems Biology of Microorganisms".
The goal pursued by SysMO was to record and describe the dynamic molecular processes going on in unicellular microorganisms in a comprehensive way and to present these processes in the form of computerized mathematical models.
Systems biology will raise biomedical and biotechnological research to a new quality level and contribute markedly to progress in understanding. Pooling European research ...
Projects: BaCell-SysMO, COSMIC, SUMO, KOSMOBAC, SysMO-LAB, PSYSMO, SCaRAB, MOSES, TRANSLUCENT, STREAM, SulfoSys, SysMO DB, SysMO Funders, SilicoTryp, Noisy-Strep
Web page: http://sysmo.net/
"Systems Understanding of Microbial Oxygen responses" (SUMO) investigates how Escherichia coli senses oxygen, or the associated changes in oxidation/reduction balance, via the Fnr and ArcA proteins, how these systems interact with other regulatory systems, and how the redox response of an E. coli population is generated from the responses of single cells. There are five sub-projects to determine system properties and behaviour and three sub-projects to employ different and complementary modelling ...
Programme: SysMO
Public web page: http://www.sysmo.net/index.php?index=55
Organisms: Escherichia coli, Escherichia coli K-12
This assay uses a dual-wavelength spectrophotometer to quantify cytochromes present in the E. coli respiratory chain.
Creators: Alison Graham, Robert Poole, Jeff Green
Submitter: Alison Graham
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
This is a well-established, classical genetic method of constructing chromosomal monolysogenic fusions to a promoterless lacZ gene.
Creators: Alison Graham, Jeff Green, Robert Poole
Submitter: Alison Graham
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Abstract (Expand)
Authors: , , , , , , S. Kunz, , , , , ,
Date Published: 7th May 2014
Publication Type: Not specified
PubMed ID: 24797925
Citation:
Abstract (Expand)
Authors: , , , S. Coakley, , ,
Date Published: 24th Apr 2014
Publication Type: Not specified
PubMed ID: 24763195
Citation:
Abstract (Expand)
Authors: , Andrea Ocone, Melanie R Stapleton, Simon Hall, Eleanor W Trotter, , ,
Date Published: 8th Aug 2012
Publication Type: Not specified
PubMed ID: 22870390
Citation:
Abstract (Expand)
Authors: , Salem Adra, Mesude Bicak, Shawn Chin, Simon Coakley, , , Chris Greenough, Duncan Jackson, Mariam Kiran, Sheila MacNeil, , Phil McMinn, Mark Pogson, , Eva Qwarnstrom, Francis Ratnieks, , Rod Smallwood, Tao Sun, David Worth
Date Published: 2012
Publication Type: Not specified
PubMed ID: 22052476
Citation:
Abstract (Expand)
Authors: Eleanor W Trotter, , Andrea M Hounslow, C Jeremy Craven, Michael P Williamson, , ,
Date Published: 27th Sep 2011
Publication Type: Not specified
PubMed ID: 21980479
Citation:
Abstract (Expand)
Authors: , , , Eleanor W Trotter, H M Shahzad Asif, Guido Sanguinetti, , ,
Date Published: 22nd Jan 2011
Publication Type: Not specified
PubMed ID: 21252224
Citation:
Presentation by Robert Pool at the SysMO Conference (Feb 2013 in Berlin)
Creator: Robert Poole
Submitter: Michael Ederer