Data files
What is a Data file?Filters
The ASCII file includes complete information on used transformers / compounds / genes and their inter-connection in the model. The Transformer information includes: Identifier name, Trivial name, Stoichiometric equation, Compartment, EC number, Pathway, Associated genes). The Compound information includes: Identifier name, Trivial name, Kegg ID, Compartment. The Gene information includes: ATG code of the genes whose products participate in transformations accounted in the model, Association with ...
Creator: Maksim Zakhartsev
Submitter: Maksim Zakhartsev
Lactobacillus plantarum JDM1 differentially expressed proteins, comparison between low and high growth rates
Creator: Anette McLeod
Submitter: Anette McLeod
Lactobacillus plantarum ATCC 14917 differentially expressed proteins, comparison between low and high growth rates
Creator: Anette McLeod
Submitter: Anette McLeod
Lactobacillus plantarum strains WCFS1, NC8, JDM1 and ATCC 14917 amino acid concentrations mM supernatant, high (D=0.4) and low (D=0.05) growth rates
Creator: Anette McLeod
Submitter: Anette McLeod
Heterologous Expression of LDH from L.actis (MG1363) in E. coli DH5α. Assessment of kinetic parameters of LDH to include in a catabolic model
Creator: Wayne Aubrey
Submitter: Wayne Aubrey
Lactobacillus plantarum, 4 strains (WCFS1, NC8, ATCC 14917, JDM1) chemostat experiments low and high growth rates, OD and DW measurements
Creator: Anette McLeod
Submitter: Anette McLeod
Lactobacillus plantarum strains WCFS1, NC8, ATCC14917, JDM1. HPLC end products mM measurements (CDM subtracted) and flux calculations, high and low growth rates.
Creator: Anette McLeod
Submitter: Anette McLeod
Creator: Margrete Solheim
Submitter: Margrete Solheim
amino acid auxotrophies as determined for S. pyogenes, E. faecalis, L. lactis and L. plantarum (ATCC, NC8, JDM1 and WCFS1) subsequent inoculation (3x) in CDM
Creator: Koen van Grinsven
Submitter: Koen van Grinsven
Vmaxes E. faecalis from chemostat cultures, D0.05, D0.15 en D0.4 triplicates for every growthrate, measured in in-vivo-like assay (Goel, Teusink, AEM, 2012) glycolytic enzymes + LDH + acetate/EtOH branch
Creator: Koen van Grinsven
Submitter: Koen van Grinsven
raw data OD600 of amino acid auxotrophy exps S. pyogenes
Creator: Koen van Grinsven
Submitter: Koen van Grinsven
raw data OD600
Creator: Koen van Grinsven
Submitter: Koen van Grinsven
Lactobacillus plantarum WCFS1 differentially expressed proteins, comparison between low and high growth rates
Creator: Anette McLeod
Submitter: Anette McLeod
Lactobacillus plantarum NC8 differentially expressed proteins, comparison between low and high growth rates
Creator: Anette McLeod
Submitter: Anette McLeod
Creator: Margrete Solheim
Submitter: Margrete Solheim
Creator: Margrete Solheim
Submitter: Margrete Solheim
Creator: Margrete Solheim
Submitter: Margrete Solheim
Creator: Margrete Solheim
Submitter: Margrete Solheim
Creator: Margrete Solheim
Submitter: Margrete Solheim
Creator: Margrete Solheim
Submitter: Margrete Solheim
Creator: Margrete Solheim
Submitter: Margrete Solheim
Creator: Margrete Solheim
Submitter: Margrete Solheim
Creator: Margrete Solheim
Submitter: Margrete Solheim
Creator: Margrete Solheim
Submitter: Margrete Solheim
amino acid auxotrophy for streptococcus pyogenes in CDM-IMIKRO (not CDM-LAB) as function of final growth yield (OD600 at stationary phase) in 96well plates (200 ul culture)
Creator: Araz Zeyniyev
Submitter: Araz Zeyniyev
Creator: Stefan Henrich
Submitter: Stefan Henrich
S. pyogenes was grown in C-limited cultures at pH 6.5 and 7.5 and at a growth rate of 0.05 The glnA mutant strain shows decreased growth in low glutamine and excess glutamate conditions and no growth at all in low glutamine and low glutamate conditions. Preliminary results of glucose-limited chemostat cultures indicate a reversion of the pH dependency of the shift from homolactic to more mixed acid fermentation: wild type - lactate/formate ratio at pH 6.5 = 11.8, at pH 7.5 = 2.8 glnA mutant - ...
Creators: Antje Sieg, Silvio Hering, Martijn Bekker
Submitter: Antje Sieg
In order to construct an in vivo-like buffer for S. pyogenes, the intracellular concentrations of Fe, K, Mg, Mn Na, P and S elements were determined via ICP-AES (inductively coupled plasma atomic emissionspectroscopy) method at the Institute of Land Use, University of Rostock. The samples for the analysis were obtained from a steady state culture grown on CDM-LAB with glucose.
Creator: Araz Zeyniyev
Submitter: Araz Zeyniyev
Creator: Tomas Fiedler
Submitter: The JERM Harvester
Creator: Tomas Fiedler
Submitter: The JERM Harvester