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Data sheet from the Neves et al JBC, 2002 publication. Used as a test data set for data upload.
Creator: Jacky Snoep
Submitter: Jacky Snoep
Measurements on Km, Vmax and allosteric activation or inhibition of the main L-lactate dehydrogenase
Creator: Tomas Fiedler
Submitter: Martijn Bekker
overview of sysmo-LAB2
Creator: Bas Teusink
Submitter: Bas Teusink
qATP values were calculated based on fermentation product formation and expected used biochemical pathways. These were averaged and used for calculation of the ATP required for maintenance and for growth. These data were subsequently used to calculate the qATP at the maximal growth rate by extrapolation
Creator: Martijn Bekker
Submitter: Martijn Bekker
E. faecalis was gucose-pulsed after resuspension in 100 mM MES buffer at pH 6.5 Intra- and extracellular metabolites concentrations were followed in time
Creator: Martijn Bekker
Submitter: Martijn Bekker
. L. lactis (NZ9000), E. faecalis (V538) and S. pyogenes (M49) wild type strain and their ldh- mutants were grown in batch cultures at 37°C in anaerobic 96 wells plates in either TH-broth supplemented with 0.5% (w/v) yeast (THY) or a chemically defined medium for LAB (pH 7.4) (CDM-LAB (10)). Both media were buffered with either 100 mM MES buffer or 100 mM MOPS buffer for growth at pH 6.5 and 7.5 respectively.
Creators: Martijn Bekker, Tomas Fiedler
Submitter: Martijn Bekker
S. pyogenes was grown in C-limited cultures at pH 6.7 and 7.5 and at a growth rate of 0.05 and 0.15
Creators: Martijn Bekker, Tomas Fiedler
Submitter: Martijn Bekker
E. faecalis was grown in C-limited cultures at pH 6.7 and 7.5 and at a growth rate of 0.05 and 0.15
Creators: Ibrahim Mehmeti, Maria Jonsson
Submitter: Martijn Bekker
L. lactis was grown in C-limited cultures at pH 6.7 and 7.5 and at a growth rate of 0.05, 0.15 and 0.40
Creator: Martijn Bekker
Submitter: Martijn Bekker
In this experiment we glucose-pulsed an L. lactiss cultures re-suspended in 100 mM MES buffer at pH 6.5. Samples were taken in time to study intra- and extracellular metabolites. These data are used to construct a kinetic model of the catabolism of E. L. lactis
Creator: Martijn Bekker
Submitter: Martijn Bekker
Glucose pulsed S pyogenes with 5 mM glucose in 100 mM MES buffer at pH 6.5 and followed intracellular metabolites in time
Creator: Martijn Bekker
Submitter: Martijn Bekker
Glucose pulsed L. lactis with 20 mM glucose in 100 mM MES buffer at pH 6.5 and followed intracellular metabolites in time
Creator: Martijn Bekker
Submitter: Martijn Bekker
L. lactis was grown in LAB medium, strongly concentrated and glucose-pulsed in a MES buffer. Intracellular metabolite concentration is followed in time.
Creator: Martijn Bekker
Submitter: Martijn Bekker
See 'Figure 3 legend' and 'Materials and methods - Time course experiments, cell lysis and quantitative immunoblotting' for details.
Creators: Dawie van Niekerk, Jacky Snoep
Submitter: Dawie van Niekerk
List of participants/1st EraSysApp PALs meeting
Creator: Olga Krebs
Submitter: Olga Krebs
Participants of 2nd FAIRDOM PALs meeting in Munich
Creators: Olga Krebs, Wolfgang Müller, Rostyslav Kuzyakiv
Submitter: Olga Krebs
The tutorial provided for EraSysAPP PALs. Covers new features associated with generating snapshots, research objects, and assigning DOIs to investigation snapshots in order to make them citable structures.
Creator: Natalie Stanford
Submitter: Natalie Stanford
FBA result of flux distribution in butanol producing e.coli strain, which designed using RobOKoD.
Creator: Natalie Stanford
Submitter: Natalie Stanford
Creators: Dawie van Niekerk, Jacky Snoep
Submitter: Dawie van Niekerk
MIAPE based Gel Electrophoresis Data Entry Worksheet
Creators: Olga Krebs, Holger Janssen
Submitter: Olga Krebs
Experimental data set for the kinetic characterisation of G3PDH
Creators: Dawie van Niekerk, Jacky Snoep
Submitter: Dawie van Niekerk
Experimental data set for the kinetic characterisation of ALD
Creators: Dawie van Niekerk, Jacky Snoep
Submitter: Dawie van Niekerk
Experimental data set for the kinetic characterisation of ENO
Creators: Dawie van Niekerk, Jacky Snoep
Submitter: Dawie van Niekerk
Experimental data set for the kinetic characterisation of GAPDH
Creators: Dawie van Niekerk, Jacky Snoep
Submitter: Dawie van Niekerk
Experimental data set for the kinetic characterisation of LDH
Creators: Dawie van Niekerk, Jacky Snoep
Submitter: Dawie van Niekerk
Experimental data set for the kinetic characterisation of PGI
Creators: Dawie van Niekerk, Jacky Snoep
Submitter: Dawie van Niekerk
Experimental data set for the kinetic characterisation of HK
Creators: Dawie van Niekerk, Jacky Snoep
Submitter: Dawie van Niekerk
Experimental data set for the kinetic characterisation of PFK
Creators: Dawie van Niekerk, Jacky Snoep
Submitter: Dawie van Niekerk