Technology type 'Next generation sequencing'

Sequencing
Current technology type

Next generation sequencing
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PacBio RS II (0) | Illumina HiSeq (1)

Related assays

11 Assays visible to you, out of a total of 26

RNA sequencing:l-fuc/d-glu

SulfoSys - Biotec

No description specified

Submitter: Theresa Kouril

Assay type: RNA-seq Profiling

Technology type: Next generation sequencing

Investigation: L-fucose degradation in Sulfolobus solfataricus P2

Study: Comparison of S. solfataricus grown on l-fucose...

Organisms: Sulfolobus solfataricus

SOPs: SulfoSYS_BIOTECH: RNA isolation and sequencing

Data files: Transcriptomics L-fuc vs D-glc

Snapshots: No snapshots

Created: 17th Dec 2014 at 13:08, Last updated: 8th Nov 2017 at 14:21

Feed switch 2015-09, 2016-01 Solbergstranda, gut microbiota composition, 16S rRNA metagenomics

GenoSysFat

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16S rRNA amplicon sequencing (Illumina MiSeq, V3-V4 region) to assess community structure.

Submitter: Jon Olav Vik

Assay type: Experimental Assay Type

Technology type: Next generation sequencing

Investigation: Omega-3 metabolism of salmon in relation to die...

Study: GSF1: Salmon feed-switch experiment vegetable a...

Organisms: Salmo salar

SOPs: 16S metagenomic sequencing library preparations, DNA extraction from intestinal samples

Data files: Combined taxonomy table from freshwater and sal..., Feed switch 2015-09 Solbergstranda FASTA for gu..., Feed switch 2015-09 Solbergstranda gut microbio..., Feed switch 2016-01 Solbergstranda FASTA for gu..., Feed switch 2016-01 Solbergstranda gut microbio...

Snapshots: No snapshots

Created: 5th Feb 2016 at 12:35, Last updated: 20th Aug 2021 at 10:18

RNA sequencing Feed switch- Liver and Gut

GenoSysFat

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From the "data accessibility" section of Life-stage associated remodeling of lipid metabolism regulation in Atlantic salmon. (Publication):

Supplementary files have been deposited to datadryad.org under the accession: https://doi.org/10.5061/dryad.j4h65. Raw RNA-Seq data have been deposited into European Nucleotide Archive (ENA) under the project Accession no. PRJEB24480.

Dead links 2022-06-29 (the Shiny ...

Submitter: Graceline Tina Kirubakaran

Assay type: RNA-seq

Technology type: Next generation sequencing

Investigation: Omega-3 metabolism of salmon in relation to die...

Study: GSF1: Salmon feed-switch experiment vegetable a...

Organisms: Salmo salar

SOPs: Liver Slice protocol, RNASeq Template

Data files: Gene_information, Gut- CPM, Gut- Counts, Gut- FPKM, Lipid_Gene_List, Liver- CPM, Liver- Counts, Liver- FPKM, Metadata, Sample metadata

Snapshots: No snapshots

Created: 31st May 2016 at 11:10, Last updated: 29th Jun 2022 at 08:29

Feed switch 2015-09, 2016-01 Solbergstranda, gross phenotypes

GenoSysFat

Record of weight, length and sex of fish sampled after feed switch between vegetable and marine oil, in September 2015 (freshwater) and January 2016 (seawater). Young fry arrived at Solbergstranda 2015-02-05 17:20.

Submitter: Thomas Harvey

Assay type: Experimental Assay Type

Technology type: Next generation sequencing

Investigation: Omega-3 metabolism of salmon in relation to die...

Study: GSF1: Salmon feed-switch experiment vegetable a...

Organisms: Salmo salar

SOPs: Schedule for transition to seawater in GSF1, Ge...

Data files: Description of feeds for crossover feeding tria..., Feed switch 2015-09, 2016-01 Solbergstranda gro..., Metabolomics sampleID Old to New

Snapshots: No snapshots

Created: 2nd Jun 2016 at 13:17, Last updated: 20th Aug 2021 at 10:20

Whole genome sequencing (Illumina)

Noisy-Strep

No description specified

Submitter: Jan-Willem Veening

Assay type: Experimental Assay Type

Technology type: Next generation sequencing

Investigation: Chromosome segregation and cell division in Str...

Study: Genome wide marker frequency analysis on new st...

Organisms: No organisms

SOPs: No SOPs

Data files: DCI15, MK453, MK454, Whole genome marker frequency analysis on strai..., Whole genome marker frequency analysis on strai..., Whole genome marker frequency analysis on strai...

Snapshots: No snapshots

Created: 19th Jul 2016 at 08:33, Last updated: 8th Nov 2017 at 14:21

sRNAomics (sRNA-Seq)

MOA - Multiomics analysis of potato response to Potato virus Y (PVY) infection

No description specified

Submitter: Ziva Ramsak

Assay type: MicroRNA Profiling

Technology type: Next generation sequencing

Investigation: MOA - Multiomics analysis of potato response to...

Study: MOA2010-05

Organisms: Solanum tuberosum, Potato virus Y

SOPs: No SOPs

Snapshots: No snapshots

Created: 18th Feb 2019 at 18:54, Last updated: 4th Mar 2019 at 16:51

Degradomics

MOA - Multiomics analysis of potato response to Potato virus Y (PVY) infection

No description specified

Submitter: Ziva Ramsak

Assay type: Degradome-Seq

Technology type: Next generation sequencing

Investigation: MOA - Multiomics analysis of potato response to...

Study: MOA2010-05

Organisms: Solanum tuberosum, Potato virus Y

SOPs: No SOPs

Data files: MOA2010-05_4_degradomics_Degradome-Seq_GEO, MOA2010-05_4_degradomics_Degradome-Seq_targets-..., MOA2010-05_4_degradomics_Degradome-Seq_targets-..., MOA_Multiomics-Analysis_Phenodata-n-MIAPPE

Snapshots: No snapshots

Created: 18th Feb 2019 at 18:58, Last updated: 4th Mar 2019 at 16:51

Liver RNA-seq data for in vivo VII

Systems toxicology of Atlantic cod

RNA-seq data for In vivo 7 samples. Only 32 RNA samples from liver of male fish sequenced. Illumina poly(A)-RNA sequencing at UiB GCF, as in Yadetie et al., 2018.

Submitter: Fekadu Yadetie

Assay type: RNA-seq

Technology type: Next generation sequencing

Investigation: 1 hidden item

Study: 1 hidden item

Organisms: Gadus morhua

SOPs: No SOPs

Data files: 3 hidden items

Snapshots: No snapshots

Created: 5th Dec 2019 at 20:34, Last updated: 6th Dec 2019 at 12:25

RNA-seq data for BaP and EE2 treated PCLS

Systems toxicology of Atlantic cod