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Master table describing all the samples included in MOA Investigation; studies are descrubed using MIAPPE (Minimum Information About a Plant Phenotyping Experiment).
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Created: 4th Mar 2019 at 16:27
Last updated: 24th Jul 2019 at 16:33
Last used: 24th Jan 2021 at 10:10

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Time series response of potato cv. Désirée, which is tolerant to PVY infection, was analysed in both inoculated as well as upper non-inoculated leaves. Additionally, transgenic plants deficient in accumulation of salicylic acid (NahG- Désirée) were studied in the same setting.
This investigation is published under the CC BY 4.0 license.
Programme: NIBSys
Public web page: Not specified
Organisms: Potato virus Y, Solanum tuberosum
Time series response of potato cv. Désirée, which is tolerant to PVY infection, was analysed in both inoculated as well as upper non-inoculated leaves. Additionally, transgenic plants deficient in accumulation of salicylic acid (NahG- Désirée) were studied in the same setting.
All the files available are published under the CC BY 4.0 license.
Snapshots: Snapshot 1, Snapshot 2, Snapshot 3, Snapshot 4, Snapshot 5
Hormonomics measurements.
Person responsible: Ziva Ramsak
Snapshots: No snapshots
Investigation: MOA - Multiomics analysis of potato response to...
Assays: Hormone concentrations
Symptoms obsevation, photosynthetic, pathogen (qPCR), transcriptomics (qPCR, microarrays, Degradome-Seq) and proteomics (MS) measurements.
Person responsible: Ziva Ramsak
Snapshots: No snapshots
Submitter: Ziva Ramsak
Assay type: Metabolite Profiling
Technology type: Gas Chromatography Mass Spectrometry
Snapshots: No snapshots
Investigation: MOA - Multiomics analysis of potato response to...
Study: MOA2013-12
Organisms: Solanum tuberosum, Potato virus Y
SOPs: No SOPs
Data files: MOA2013-12_1_hormonomics_GCMS, MOA2013-12_1_hormonomics_GCMS_ANOVA-groups, MOA2013-12_1_hormonomics_R-code, MOA_Multiomics-Analysis_Phenodata-n-MIAPPE
Submitter: Ziva Ramsak
Assay type: Protein Quantification
Technology type: Orbitrap Velos
Snapshots: No snapshots
Investigation: MOA - Multiomics analysis of potato response to...
Study: MOA2010-05
Organisms: Solanum tuberosum, Potato virus Y
SOPs: No SOPs
Data files: MOA2010-05_5_proteomics_Orbitrap-MaxQuant, MOA2010-05_5_proteomics_Orbitrap-MaxQuant_logFC, MOA2010-05_5_proteomics_Orbitrap-MaxQuant_peptides, MOA2010-05_5_proteomics_Orbitrap-SpectralCounts, MOA2010-05_5_proteomics_Orbitrap-SpectralCounts..., MOA2010-05_5_proteomics_Orbitrap-SpectralCounts..., MOA_Multiomics-Analysis_Phenodata-n-MIAPPE
Submitter: Ziva Ramsak
Assay type: Degradome-Seq
Technology type: Next generation sequencing
Snapshots: No snapshots
Investigation: MOA - Multiomics analysis of potato response to...
Study: MOA2010-05
Organisms: Solanum tuberosum, Potato virus Y
SOPs: No SOPs
Data files: MOA2010-05_4_degradomics_Degradome-Seq_GEO, MOA2010-05_4_degradomics_Degradome-Seq_targets-..., MOA2010-05_4_degradomics_Degradome-Seq_targets-..., MOA_Multiomics-Analysis_Phenodata-n-MIAPPE
Submitter: Ziva Ramsak
Assay type: Bioinformatics
Technology type: Interactions
Snapshots: No snapshots
Investigation: MOA - Multiomics analysis of potato response to...
Study: MOA2010-05
Organisms: Solanum tuberosum, Potato virus Y
SOPs: No SOPs
Data files: MOA2010-05_3C_sRNAomics_bioinformatics_PHAS-loci, MOA2010-05_3C_sRNAomics_bioinformatics_miRNA-novel, MOA2010-05_3C_sRNAomics_bioinformatics_sRNA-tar..., MOA2010-05_3C_sRNAomics_bioinformatics_sRNA-tar..., MOA2010-05_3C_sRNAomics_bioinformatics_sRNA-tar..., MOA_Multiomics-Analysis_Phenodata-n-MIAPPE
Investigation: MOA - Multiomics analysis of potato response to...
Study: MOA2010-05
Organisms: Solanum tuberosum, Potato virus Y
SOPs: No SOPs
Data files: MOA2010-05_3_sRNAomics_qPCR, MOA2010-05_3_sRNAomics_qPCR_MIQE, MOA_Multiomics-Analysis_Phenodata-n-MIAPPE
Submitter: Ziva Ramsak
Assay type: MicroRNA Profiling
Technology type: Next generation sequencing
Snapshots: No snapshots
Investigation: MOA - Multiomics analysis of potato response to...
Study: MOA2010-05
Organisms: Solanum tuberosum, Potato virus Y
SOPs: No SOPs
Data files: MOA2010-05_3_sRNAomics_sRNA-Seq_GEO, MOA2010-05_3_sRNAomics_sRNA-Seq_R-code, MOA2010-05_3_sRNAomics_sRNA-Seq_miRNAs_counts, MOA2010-05_3_sRNAomics_sRNA-Seq_miRNAs_counts_RPM, MOA2010-05_3_sRNAomics_sRNA-Seq_miRNAs_logFC, MOA2010-05_3_sRNAomics_sRNA-Seq_phasiRNAs_counts, MOA2010-05_3_sRNAomics_sRNA-Seq_phasiRNAs_count..., MOA2010-05_3_sRNAomics_sRNA-Seq_phasiRNAs_logFC, MOA2010-05_3_sRNAomics_sRNA-Seq_vsiRNAs_counts, MOA2010-05_3_sRNAomics_sRNA-Seq_vsiRNAs_counts_RPM, MOA_Multiomics-Analysis_Phenodata-n-MIAPPE
Investigation: MOA - Multiomics analysis of potato response to...
Study: MOA2010-05
Organisms: Solanum tuberosum, Potato virus Y
SOPs: No SOPs
Data files: MOA2010-05_2_transcriptomics_qPCR, MOA2010-05_2_transcriptomics_qPCR_MIQE, MOA_Multiomics-Analysis_Phenodata-n-MIAPPE
Submitter: Ziva Ramsak
Assay type: Gene Expression Profiling
Technology type: Custom Array
Snapshots: No snapshots
Investigation: MOA - Multiomics analysis of potato response to...
Study: MOA2010-05
Organisms: Solanum tuberosum, Potato virus Y
SOPs: No SOPs
Data files: MOA2010-05_2_transcriptomics_microarrays_GEO, MOA2010-05_2_transcriptomics_microarrays_R-code, MOA2010-05_2_transcriptomics_microarrays_R-code..., MOA2010-05_2_transcriptomics_microarrays_logFC, MOA2010-05_2_transcriptomics_microarrays_normal..., MOA_Multiomics-Analysis_Phenodata-n-MIAPPE
Investigation: MOA - Multiomics analysis of potato response to...
Study: MOA2010-05
Organisms: Solanum tuberosum, Potato virus Y
SOPs: No SOPs
Data files: MOA2010-05_1C_pathogen-abundance_qPCR, MOA_Multiomics-Analysis_Phenodata-n-MIAPPE
Submitter: Ziva Ramsak
Assay type: Phenotype observation
Technology type: Leaf Chamber Fluorometer
Snapshots: No snapshots
Investigation: MOA - Multiomics analysis of potato response to...
Study: MOA2010-05
Organisms: Solanum tuberosum, Potato virus Y
SOPs: No SOPs
Data files: MOA2010-05_1B_photosynthetic-activity, MOA2010-05_1B_photosynthetic-activity_LM, MOA_Multiomics-Analysis_Phenodata-n-MIAPPE
Description of observed phenotypic variables in the MOA investigation.
Submitter: Ziva Ramsak
Assay type: Phenotype observation
Technology type: Imaging
Snapshots: Snapshot 1
Investigation: MOA - Multiomics analysis of potato response to...
Study: MOA2010-05
Organisms: Solanum tuberosum, Potato virus Y
SOPs: No SOPs
Data files: MOA2010-05_1A_disease-symptoms, MOA2010-05_1A_disease-symptoms-images, MOA_Multiomics-Analysis_Phenodata-n-MIAPPE