Hormonomics measurements.
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Created: 18th Feb 2019 at 18:32
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National Institute of Biology, Department of Biotechnology and Systems Biology projects
Projects: HYp - Spatiotemporal analysis of hypersensitive response to Potato virus Y in potato, pISA-tree, MOA - Multiomics analysis of potato response to Potato virus Y (PVY) infection, SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture, INDIE - Biotechnological production of sustainable indole, _p_stRT, ADAPT - Accelerated Development of multiple-stress tolerAnt PoTato, _p_RNAinVAL, tst, tst2, Playground
Web page: http://www.nib.si/eng/index.php/departments/department-of-biotechnology-and-systems-biology
Time series response of potato cv. Désirée, which is tolerant to PVY infection, was analysed in both inoculated as well as upper non-inoculated leaves. Additionally, transgenic plants deficient in accumulation of salicylic acid (NahG- Désirée) were studied in the same setting.
This investigation is published under the CC BY 4.0 license.
Programme: NIBSys
Public web page: Not specified
Organisms: Potato virus Y, Solanum tuberosum
Time series response of potato cv. Désirée, which is tolerant to PVY infection, was analysed in both inoculated as well as upper non-inoculated leaves. Additionally, transgenic plants deficient in accumulation of salicylic acid (NahG- Désirée) were studied in the same setting.
All the files available are published under the CC BY 4.0 license.
Submitter: Ziva Ramsak
Studies: MOA2010-05, MOA2013-12
Assays: Degradomics, Disease symptoms, Hormone concentrations, Pathogen abundance, Photosynthetic activity, Proteomics, Transcriptomics (microarrays), Transcriptomics (qPCR), sRNAomics (bioinformatics), sRNAomics (qPCR), sRNAomics (sRNA-Seq)
Snapshots: Snapshot 1, Snapshot 2, Snapshot 3, Snapshot 4, Snapshot 5
Submitter: Ziva Ramsak
Assay type: Metabolite Profiling
Technology type: Gas Chromatography Mass Spectrometry
Investigation: MOA - Multiomics analysis of potato response to...
Study: MOA2013-12
Organisms: Solanum tuberosum, Potato virus Y
SOPs: No SOPs
Data files: MOA2013-12_1_hormonomics_GCMS, MOA2013-12_1_hormonomics_GCMS_ANOVA-groups, MOA2013-12_1_hormonomics_R-code, MOA_Multiomics-Analysis_Phenodata-n-MIAPPE
Snapshots: No snapshots
Master table describing all the samples included in MOA Investigation; studies are descrubed using MIAPPE (Minimum Information About a Plant Phenotyping Experiment).
Creators: None
Submitter: Ziva Ramsak
Investigations: MOA - Multiomics analysis of potato response to...
Studies: MOA2010-05, MOA2013-12
Assays: Degradomics, Disease symptoms, Hormone concentrations, Pathogen abundance, Photosynthetic activity, Proteomics, Transcriptomics (microarrays), Transcriptomics (qPCR), sRNAomics (bioinformatics), sRNAomics (qPCR), sRNAomics (sRNA-Seq)
R code for the hormone analysis.
Creator: Ziva Ramsak
Submitter: Ziva Ramsak
Investigations: MOA - Multiomics analysis of potato response to...
Studies: MOA2013-12
Assays: Hormone concentrations
Concentrations of seven different plant hormones (ABA, GA3, OPDA, JA, IAA and SA) as determined by gas chromatography coupled with mass spectrometry (GC-MS) for MOA samples.
Creators: None
Submitter: Ziva Ramsak
Investigations: MOA - Multiomics analysis of potato response to...
Studies: MOA2013-12
Assays: Hormone concentrations
Significant changes for a set of hormones between treatment-genotype groups as determined by ANOVA followed by LSD post hoc analysis (FDR < 0.05) using the Agricolae R package.
Creators: None
Submitter: Ziva Ramsak
Investigations: MOA - Multiomics analysis of potato response to...
Studies: MOA2013-12
Assays: Hormone concentrations