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Disease Maps277 Independent Projects12 de.NBI Systems Biology Service Center (de.NBI-SysBio)10 FAIRDOM8 COMBINE (Computational Modeling in Biology Network)8 Covid-19 disease map - Bioinformatics analysis and computational modelling8 SysMO7 HUMET7 LiSyM - Systems Medicine of the Liver6 German Association for Medical Informatics, Biometry and Epidemiology (GMDS)6 nfdi4health - German National Research Data Infrastructure for Personal Health Data6 e:med4 FAIR Biocatalysis4 e:Bio3 Model repository for M4 (Make Me My Model) clients of ISBE3 Era CoBioTech3 ERNEST - European Research Network on Signal Transduction3 Drug development for neglected parasitic diseases3 C19DM-Neo4j3 Macrophage logical modeling3 ERASysAPP2 MS_DILI2 EU Projects2 VHP Programme2 NIBSys1 Druglogics1 Innate immunity1 BlueBio ERA-NET COFUND1 Cancer drug discovery preclinical research1 DFG founded projects1 iPlacenta: ​A European Union Horizon 2020 innovative training network (ITN)1 COST ACTION CA21111 - OneHealthdrugs (One Health drugs against parasitic vector borne diseases in Europe and beyond) 1 More...

COVID-19 Disease Map277 Kinetics on the move - Workshop 201610 Covid-19 Interferon pathway modelling and analysis8 FAIRDOM7 HUMET Startup7 ModeleXchange initiative7 SDBV/HITS7 GMDS Project Group "FAIRe Dateninfrastrukturen für die Biomedizinische Informatik"6 COVID-19 related studies and tools in Germany6 nfdi4health - German National Research Data Infrastructure for Personal Health Data6 Example use cases5 FAIRDOM & LiSyM & de.NBI Data Structuring Training5 LiSyM Core Infrastructure and Management (LiSyM-PD)4 FAIRDOM user meeting4 COMBINE Multicellular Modelling4 INCOME4 EnzymeML4 FAIRDOM Community Workers4 SysMO DB3 de.NBI-SysBio3 Early Metabolic Injury (LiSyM-EMI - Pillar I)3 Chronic Liver Disease Progression (LiSyM-DP - Pillar II)3 Regeneration and Repair in Acute-on-Chronic Liver Failure (LiSyM-ACLF - Pillar III)3 Liver Function Diagnostics (LiSyM-LiFuDi - Pillar IV)3 Model Guided Pharmacotherapy In Chronic Liver Disease (LiSyM-MGP)3 Multi-Scale Models for Personalized Liver Function Tests (LiSyM-MM-PLF)3 The Hedgehog Signalling Pathway (LiSyM-JGMMS)3 Molecular Steatosis - Imaging & Modeling (LiSyM-MSIM)3 SBEpo - Systems Biology of Erythropoietin3 EraCoBiotech 2 nd call proposal preparation3 ERNEST Mapping Group Pilot Study3 NMTrypI - New Medicines for Trypanosomatidic Infections3 C19DM-Neo4j3 SNAPPER: Synergistic Neurotoxicology APP for Environmental Regulation3 C19DM - Macrophage logical model3 BioCreative VII3 SysMO-LAB2 ICYSB 2015 - International Practical Course in Systems Biology2 Service to URV Tarragona, Spain with respect to their Safety Assessment of Endocrine Disrupting Chemicals model (Active NOW)2 MS_DILI2 MESI-STRAT2 BESTER2 PoLiMeR - Polymers in the Liver: Metabolism and Regulation2 MIX-UP2 Mechanism based modeling viral disease ( COVID-19 ) dynamics in human population2 Modelling COVID-19 epidemics2 CoVIDD - Coronavirus interactions in drug discovery - optimization and implementation2 SASKit: Senescence-Associated Systems diagnostics Kit for cancer and stroke2 CC-TOP2 SABIO-VIS2 MESI-STRAT Review2 VHP project2 MESI-Review 20242 BaCell-SysMO1 COSMIC1 PSYSMO1 SulfoSys1 iRhythmics1 SYSTERACT1 ZucAt1 ErasysApp Funders1 EmPowerPutida1 Service to Milano-Bicocca with respect to their ATP-ROS model (Active NOW)1 Make Me My Model1 Service to University of Lisbon (Portugal) with respect to their CFTR maturation model (Active NOW)1 Service to LCSB (Luxembourg) with respect to ROS management in Parkinson’s disease and cancer model (Active NOW)1 Service to Universidade Católica Portugues with respect to their Molecular Insight into Autism Spectrum Disorder (ASD) model (Active NOW)1 Service to Slovenia with respect to their Protease signaling network in neurodegeneration model (Active NOW)1 Service to University of Duisburg- Essen (Germany): with respect to their The Yin-Yang of Metabolism; Endometatoxicity (YYME) model (Active NOW)1 Service to Sheffield University (UK): with respect to Mitochondrial perfect adaptation model (Active NOW)1 Service to Sanquin (Amsterdam): with respect to Modelling of acute and chronic inflammation (Prospective)1 Service to Munich (Germany): with respect toCharged peptide to charged membrane binding model (Prospective)1 MycoSynVac - Engineering Mycoplasma pneumoniae as a broad-spectrum animal vaccine1 Training Hunfeld1 Colosys1 Sustainable co-production1 Multiscale modelling of state transitions in the host-microbiome-brain network1 ROS detailed model for MSB manucript1 Rhodolive1 HOTSOLUTE1 TRALAMINOL1 Extremophiles metabolsim1 INDIE - Biotechnological production of sustainable indole1 OLCIR: Optimization of Lung Cancer Therapy with Ionizing Radiation1 NAD COMPARTMENTATION1 SCyCode The Autotrophy-Heterotrophy Switch in Cyanobacteria: Coherent Decision-Making at Multiple Regulatory Layers1 Stress granules1 AquaHealth (ERA-BlueBio)1 Standardization of enzyme-catalyzed reaction measurement1 Standardization of enzyme-catalyzed reaction modelling1 Mass spectrometry proteomics for biomarker discovery1 Molecular characterization and angiogenic properties of extracellular vesicles in healthy and preeclamptic amniotic fluid1 Thymidylate synthase dimer dissociation1 Boolean modeling of Parkinson disease map1 Overexpression of microRNAs miR-25-3p, miR-185-5p and miR-132-3p in Late Onset Fetal Growth Restriction, Validation of Results and Study of the Biochemical Pathways Involved1 SDBV ephemeral data exchanges1 The BeeProject1 Comparative Proteome Profile of Placental Sub-anatomical regions1 WG1 - Compound libraries coordination and integration of compound design1 WG2 - Integration of early phase studies and low environmental impact actions1 WG3 - Coordination of in vitro-to-in vivo translation of OneHealth leads and candidates1 WG4 - Integration of R&D process-environmental studies and translation in informed whitepaper1 WG5 - Promote dissemination1 WG6 - Promote the transfer of knowledge1 The deregulated interplay of complement system and antioxidant activity as a driver of adverse pregnancy outcomes1 More...

Luxembourg Centre for Systems Biomedicine (LCSB)16 Heidelberg Institute for Theoretical Studies (HITS gGmbH)10 University Maastricht9 National Institute for Infectious Diseases "L.Spallanzani"8 Ontario Institute for Cancer Research7 University of Bonn6 Institut Curie6 Institut Pasteur6 Norwegian University of Science and Technology5 University of Rostock5 University of Edinburgh5 Kinetics on the move Workshop at HITS5 European Institute for Systems Biology and Medicine5 Barcelona Supercomputing Center5 Harvard Medical School5 Institut Pasteur de Tunis5 Helmholtz Zentrum München / Institute of Experimental Genetics5 University of Heidelberg4 Universität Konstanz4 Earlham Institute4 Keio University4 The European Bioinformatics Institute < EMBL-EBI4 University of Rome Tor Vergata4 Swiss Institute of Bioinformatics4 Imperial College London3 University of Luxembourg3 University of Tübingen3 ICAHN Icahn School of Medicine at Mount Sinai3 Gladstone Institutes3 Policlinico Universitario Agostino Gemelli IRCCS3 University of Évry Val d'Essonne3 University of Pittsburgh3 Fundación Progreso y Salud3 Monash University3 Oregon Health & Science University (OHSU)3 University of Nebraska-Lincoln3 NYU Grossman School of Medicine3 Pacific Northwest National Laboratory3 Elsevier3 Auckland Bioengineering Institute2 Biomax Informatics AG2 Centre national de la Recherche Scientifique (CNRS)2 Hospital del Mar Research Institute (IMIM)2 INSERM2 KAUST2 Sanofi R&D2 Shanghai University2 Inria Saclay - Île-de-France2 Golestan University of Medical Sciences2 University of California, Los Angeles2 Ankara University2 CSIC Madrid1 Humboldt-Universität zu Berlin1 VU University Amsterdam1 University of Amsterdam1 Manchester Centre for Integrative Systems Biology, University of Manchester1 University of Newcastle1 Wageningen University & Research1 University of Manchester - Department of Computer Science1 European Molecular Biology Laboratory1 UNIBI: Bielefeld University1 FAIRDOM User meeting1 Centro de Investigación Príncipe Felipe1 University of Ulster1 geneXplain GmbH1 University Medical Center Hamburg - Eppendorf Hamburg1 Liverpool John Moores University1 University of Cambrige1 Bilkent University1 Infrastructure Systems Biology Europe1 University College London (UCL)1 ICB Helmholtz Center Munich1 Düzen Biological Sciences R&D and Production Company1 University of Leipzig - Institute for Medical Informatics, Statistics and Epidemiology (IMISE)1 University of Innsbruck1 Integrative BioInformatics Inc.1 CSIR-Institute of Genomics and Integrative Biology1 The International Clinical Research Center of St. Anne's University Hospital Brno1 Yenepoya University1 Riga Technical University1 American University of Sharjah1 Centre de Recherche en Cancerologie de Toulouse1 Centre for Research and Technology Hellas1 esqLABS GmbH1 Estonian Genome Centre, Institute of Genomics, University of Tartu1 Fundacion, Progreso y Salud1 German Center for Neurodegenerative Diseases (DZNE)1 Guy's and St Thomas' NHS Foundation Trust and King's College London1 Hasso-Plattner Institute/ TU Berlin1 IBM Research, Zurich1 Indraprastha Institute of Information Technology Delhi1 Institute for Globally Distributed Open Research and Education - IGDORE1 Mediterranean Institute for Life Sciences (MedILS)1 Morpho-Biomimicry research and innovation centre1 MRC-University of Glasgow Centre for Virus Research1 Paris Brain Institute / Inria1 Systems Biology Institute (SBI)1 Università Cattolica del Sacro Cuore1 University of Lisbon1 University of Florida1 University of Lyon1 University of Montpellier1 University of Rochester1 University of Surrey1 University of Western Australia1 US Environmental Protection Agency1 Biomathematica1 Institut de Recherche Saint Louis1 University of Lille1 BIOASTER1 Autonomous University of Madrid1 National Institute of Immunology1 Accelera1 Forman Christian College (a chartered university)1 University of the Witwatersrand1 Uppsala University1 Cardiff University1 National Institute of Standards and Technology1 Mansoura Faculty of Medicine1 Lorraine Research Laboratory in Computer Science and its Applications (LORIA)1 King AbdulAziz University1 Moredun Research Institute1 All India Institute of Medical Sciences, Kalyani1 Radboud University Medical Center1 Institute of Bioinfomratics1 Oregon State University1 University of Cape Town1 OROBIX Sarl1 ICESI University1 Shri Govindram Seksaria Institute of Technology and Science1 University of Barcelona1 Zanjan University of Medical Sciences1 New York University1 University of Würzburg1 University of Northampton1 Helmholtz Zentrum München1 Pondicherry University1 independent researcher1 University of Eastern Finland (UEF)1 National Institute of Informatics1 University of British Columbia1 Instituto de Investigación Sanitaria La Fe1 University of Applied Sciences Mittweida1 More...

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Curation55 Data Integration39 Systems Biology25 Bioinformatics23 Modelling23 Modeling21 Computational Systems Biology17 Data analysis14 Molecular Biology12 Mathematical modelling11 Data Management11 Network Analysis11 Biochemistry7 Databases6 Knowledge Management6 Genomics5 Transcriptomics5 Dynamic modelling5 Genetics4 Software Engineering4 Machine Learning4 Pathway Analysis4 Microbiology3 Cell biology3 Proteomics3 SBML3 Java3 Metabolic Engineering3 SBGN3 standards3 Immunology3 Network Visualization3 Biocuration3 Data mining3 Knowledge integration3 Constraint-based Modelling3 Parameter estimation3 Text Mining3 Virology2 Python2 Microarray analysis2 dynamics of biological networks2 semantics2 SBGN standard2 Data analysisMathematical modellingBioinformaticsSystems biology2 Systems Medicine2 Data curation2 Cancer research2 Neuroscience2 AI2 Deep Learning2 outreach2 Visualisation2 Network biology2 Editorial Committee2 Publication platform2 Curation of molecular interactions2 Disease Maps2 Dynamics and Control of Biological Networks2 Metabolic Networks2 Project Management2 Pathway Curation2 Mechanistic Modelling2 Distributed Systems2 Metabolomics1 Agent-based modelling1 R1 Information Retrieval1 Programming1 Data analysis Mathematical modelling Bioinformatics Systems biology1 gene regulation1 Synthetic Biology1 protein-protein interactions1 Cell physiology1 Biotechnology1 computational structural biology1 molecular modeling1 Medical microbiology1 Computational modelling1 Liver1 Image analysis1 Epigenetics1 metabolism1 VREs1 Phytopathology1 Calcium signalling1 learning1 memory1 cooperativity1 Human-Computer Interaction1 Systems Biology Graphical Notation1 Lipids1 Nutrition1 promoters and anhancers1 signal transduction1 drug targets1 lipidomics1 Innate immunity1 Graphical Editors1 Visualization1 Pharmacokinetics1 Toxicology1 Plant biology1 GMP1 Pathways1 clinical chemistry1 protease inhibitors1 COVID-191 Biological knowledge managament1 ODE modeling1 Human physiology1 Immersive Analytics1 Literature mining1 Molecular Maps1 Complex human disease1 Boolean Models1 Executable disease networks1 Medicine1 Drug Curation1 Dissemination1 Funding1 Integration1 General support1 Simulation of protein-protein interactions1 Knowledge modelling1 Quantitative Biology1 Physical Chemistry1 Validation1 Ontology1 Analysis1 Computational Biology1 Data Modelling1 Kinetics1 Reaction Networks1 Rule-based Models1 Tracer Kinetics1 Collective Behaviour1 interoperability1 scholarly communications1 discourse analysis1 SARS-CoV 21 rare diseases1 GCP1 Genome-scale Metabolic Models1 Computer-aided drug design1 N-terminomics1 TAILS1 degradomics1 proteases1 protease substrate discovery1 MALT1 paracaspase in NFkB activtaion1 Interferon inactivation by proteases1 viral proteases1 More...

R20 Python18 SBML11 CellDesigner10 Cytoscape9 Matlab8 Databases7 Data Management6 Systems Biology6 Computational and theoretical biology5 pathvisio5 Molecular Biology4 Bioinformatics4 ODE4 Dynamic modelling4 SBGN4 wikipathways4 Data Integration4 SEEK4 Genomics3 Transcriptomics3 Cell designer3 Computational Systems Biology3 Molecular biology techniques (RNA/DNA/Protein)3 network theory3 Machine Learning3 SBGN-ED3 Knowledge Management3 Microbiology2 Genetics2 Cell and tissue culture2 Proteomics2 Java2 Workflows2 Ontologies2 linux2 Javascript2 Reactome2 Neo4J2 c++2 High Performance Computing2 Data Science2 SABIO-RK2 Jupyter2 libSBML2 cobrapy toolbox2 Shell scripting2 GINsim2 Cell Collective2 Newt Editor2 DisGeNET2 ODE Modelling2 Kinetic Modeling2 Biochemistry1 Biochemistry and protein analysis1 Cell biology1 Cytometry and fluorescent microscopy1 Genetic analysis1 Single Cell analysis1 Partial differential equations1 Agent-based modelling1 Copasi1 Web services1 Mathematica1 Chip-chip1 Ruby on Rails1 Spring1 MIRIAM1 SQL1 stimulus response experiments1 differential algebraic equations1 data modeling1 quantitative western blot analyses1 quantitative western blot analysis1 Stochastic models1 Deterministic models1 PDE1 Flux balance analysis1 BioMart1 model reduction1 Western blot analyses1 stochastic methods1 microbiology techniques1 Pathway Tools1 Grails web development framework1 SABIO-RK database1 semantic web1 RightField1 RNAseq1 COBRA toolbox1 Protege1 bash1 web development1 Statistics1 multi-state modelling1 MCell1 Boolean modeling1 yEd Graph Editor1 geneXplain platform1 BioUML1 SBGNViz1 cBioPortal1 PathwayMapper1 ChiBE1 Petri Nets1 Metabolic modelling1 jupyter notebooks1 Data2Dynamics1 AMICI1 PESTO1 NetworkX1 Protein2GO1 BioNetGen1 ProcessDB1 VANTED1 MetaCrop1 TEAMwISE1 NaviCell1 Literature mining1 Literature mining1 CaSQ1 SBGNML1 JSBML1 SBSCL1 InSilico1 Parameter estimation1 Text Mining1 constraint programming1 model checking1 Prolog1 yEd1 bridgedb1 OmniPath1 pypath1 omics analysis1 Constraint-based analysis1 Ordinary differential equations1 Multiscale modeling1 COBRApy1 Molecular docking and simulation1 TAILS1 PICS1 ATOMS1 Protease assays1 MALDI-TOF/TOF1 LC-MS/MS1 Animal modes1 More...