Assays

What is an Assay?

21 Assays visible to you, out of a total of 22

RNA Sequencing: phenol vs D-glucose

SulfoSys - Biotec

No description specified

Submitter: Jacqueline Wolf

Assay type: Experimental Assay Type

Technology type: Rna-seq

Investigation: Phenol degradation in Saccharolobus solfataricu...

Study: Comparison of S. solfataricus P2 grown on pheno...

Organisms: Sulfolobus solfataricus

SOPs: No SOPs

Data files: Transcriptome analysis phenol vs glucose

Snapshots: No snapshots

Created: 23rd Jul 2020 at 20:02, Last updated: 16th Dec 2020 at 16:09

Metabolome analysis: phenol vs D-glucose

SulfoSys - Biotec

No description specified

Submitter: Jacqueline Wolf

Assay type: Experimental Assay Type

Technology type: Gas Chromatography

Investigation: Phenol degradation in Saccharolobus solfataricu...

Study: Comparison of S. solfataricus P2 grown on pheno...

Organisms: Sulfolobus solfataricus

SOPs: No SOPs

Data files: Metabolome analysis phenol vs glucose

Snapshots: No snapshots

Created: 23rd Jul 2020 at 13:53, Last updated: 16th Dec 2020 at 16:08

RNA sequencing: Casaminoacids vs D-glc

SulfoSys - Biotec

No description specified

Submitter: Jacqueline Wolf

Assay type: RNA-seq Profiling

Technology type: Rna-seq

Investigation: Amino acid degradation in Sulfolobus solfataric...

Study: Comparison of Sulfolobus solfataricus P2 grown ...

Organisms: Sulfolobus solfataricus

SOPs: SulfoSYS_BIOTECH: RNA isolation and sequencing

Data files: RNA-Seq mappings - Sulfolobus solfataricus P2 -..., RNA-Seq mappings - Sulfolobus solfataricus P2 -..., RNA-Seq raw data - Sulfolobus solfataricus P2 -..., SSO Genome reference

Snapshots: No snapshots

Created: 7th Aug 2016 at 16:19, Last updated: 18th Oct 2018 at 09:38

Proteome analysis: Casaminoacids versus D-Glc

SulfoSys - Biotec

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No description specified

Submitter: Jacqueline Wolf

Assay type: Proteomics

Technology type: Tandem Mass Spectrometry

Investigation: Amino acid degradation in Sulfolobus solfataric...

Study: Comparison of Sulfolobus solfataricus P2 grown ...

Organisms: Sulfolobus solfataricus

SOPs: SULFOSYSbiotech_Proteome analysis

Data files: Integrated summary of transcriptomics and prote..., Proteomics_Casaminoacids vs Glucose_Phenyx sear..., Proteomics_Casaminoacids vs Glucose_results, Raw MS data Casaminoacids vs Glucose - Suppleme..., Raw MS data Casaminoacids vs Glucose - Suppleme..., Raw MS data Casaminoacids vs glucose - Main Zi..., Raw MS data Casaminoacids vs glucose - Suppleme...

Snapshots: No snapshots

Created: 7th Aug 2016 at 16:28, Last updated: 18th Oct 2018 at 09:38

Metabolome analysis: Casaminoacids versus D-Glc

SulfoSys - Biotec

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Intracellular and extracellular metabolome analysis

Submitter: Jacqueline Wolf

Assay type: Metabolite Profiling

Technology type: Gas Chromatography Mass Spectrometry

Investigation: Amino acid degradation in Sulfolobus solfataric...

Study: Comparison of Sulfolobus solfataricus P2 grown ...

Organisms: Sulfolobus solfataricus

SOPs: No SOPs

Data files: Amino acid depletion profile of S. solfataricus..., Calculation of amino acid uptake rates, Integrated summary of transcriptomics and prote..., Metabolomics Casaminoacids vs Glc

Snapshots: No snapshots

Created: 7th Aug 2016 at 16:31, Last updated: 18th Oct 2018 at 09:38

Metabolic modelling of S. solfataricus during growth on casaminoacids

SulfoSys - Biotec

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Growth on D-glucose served as reference scenario

Submitter: Jacqueline Wolf

Biological problem addressed: Genome Scale

Investigation: Amino acid degradation in Sulfolobus solfataric...

Study: Comparison of Sulfolobus solfataricus P2 grown ...

Organisms: Sulfolobus solfataricus

Models: Metabolic model of Sulfolobus solfataricus

SOPs: No SOPs

Data files: Biomass composition of S. solfataricus P2 grown..., Calculation of amino acid uptake rates, Description of changes made to the model compar..., Distribution of enzymes involved in oxidative S...

Snapshots: No snapshots

Created: 7th Aug 2016 at 17:19, Last updated: 18th Oct 2018 at 09:38

PGK 30C data

SulfoSys, SulfoSys - Biotec

Experimental data for the yeast PGK incubations at 30C, with and without recycling of ATP.

Submitter: Jacky Snoep

Assay type: Metabolite Concentration

Technology type: Technology Type

Investigation: Phosphoglycerate kinase acts as a futile cycle ...

Study: PGK-30C

Organisms: No organisms

SOPs: No SOPs

Data files: PGK yeast with recycling of ATP, PGK yeast without recycling of ATP

Snapshots: No snapshots

Created: 28th Sep 2017 at 10:08, Last updated: 8th Nov 2017 at 14:21

PGK 70 data

SulfoSys, SulfoSys - Biotec

Changes in metabolite concentrations were either quantified via 31P NMR or enzymatically

Submitter: Theresa Kouril

Assay type: Experimental Assay Type

Technology type: NMR

Investigation: Phosphoglycerate kinase acts as a futile cycle ...

Study: PGK-70C

Organisms: No organisms

SOPs: No SOPs

Data files: Sso PGK (14 ug/ml) in presence of recycling sys..., Sso PGK (28 ug/ml) in presence of recycling sys..., Sso PGK in absence of recycling system, 31P NMR..., Sso PGK in presence of ATP recycling system at ...

Snapshots: No snapshots

Created: 28th Sep 2017 at 11:16, Last updated: 8th Nov 2017 at 14:21

BPG degradation

SulfoSys, SulfoSys - Biotec

BPG degradation at 70C

Submitter: Jacky Snoep

Assay type: Metabolite Concentration

Technology type: Technology Type

Investigation: Phosphoglycerate kinase acts as a futile cycle ...

Study: BPG stability

Organisms: No organisms

SOPs: No SOPs

Data files: BPG degradation at 70

Snapshots: No snapshots

Created: 28th Sep 2017 at 11:17, Last updated: 8th Nov 2017 at 14:21

PGK-GAPDH 30

SulfoSys, SulfoSys - Biotec

No description specified

Submitter: Theresa Kouril

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Phosphoglycerate kinase acts as a futile cycle ...

Study: PGK-GAPDH 30C & 70C

Organisms: No organisms

SOPs: No SOPs

Data files: PGK-GAPDH 30, 3PG, GAP & BPG, PGK-GAPDH 30, PYR

Snapshots: No snapshots

Created: 28th Sep 2017 at 11:58, Last updated: 8th Nov 2017 at 14:21

PGK-GAPDH 70

SulfoSys, SulfoSys - Biotec

No description specified

Submitter: Theresa Kouril

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Phosphoglycerate kinase acts as a futile cycle ...

Study: PGK-GAPDH 30C & 70C

Organisms: No organisms

SOPs: No SOPs

Data files: PGK-GAPDH 70

Snapshots: No snapshots

Created: 28th Sep 2017 at 12:01, Last updated: 8th Nov 2017 at 14:21

non-enzymatic phosphoenolpyruvate (PEP) degradation at high temperature

SulfoSys, SulfoSys - Biotec

No description specified

Submitter: Theresa Kouril

Assay type: Experimental Assay Type

Technology type: Enzymatic Activity Measurements

Investigation: 1 hidden item

Study: 1 hidden item

Organisms: No organisms

SOPs: No SOPs

Data files: non-enzymatic phosphoenolpyruvate (PEP) degrada...

Snapshots: No snapshots

Created: 27th Mar 2017 at 10:14, Last updated: 8th Nov 2017 at 14:21

RNA sequencing:l-fuc/d-glu

SulfoSys - Biotec

No description specified

Submitter: Theresa Kouril

Assay type: RNA-seq Profiling

Technology type: Next generation sequencing

Investigation: L-fucose degradation in Sulfolobus solfataricus P2

Study: Comparison of S. solfataricus grown on l-fucose...

Organisms: Sulfolobus solfataricus

SOPs: SulfoSYS_BIOTECH: RNA isolation and sequencing

Data files: Transcriptomics L-fuc vs D-glc

Snapshots: No snapshots

Created: 17th Dec 2014 at 13:08, Last updated: 8th Nov 2017 at 14:21

intracellular metabolome analysis: l-fucose vs d-glucose

SulfoSys - Biotec

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No description specified

Submitter: Theresa Kouril

Assay type: Metabolite Profiling

Technology type: Gas Chromatography Mass Spectrometry

Investigation: L-fucose degradation in Sulfolobus solfataricus P2

Study: Comparison of S. solfataricus grown on l-fucose...

Organisms: Sulfolobus solfataricus

SOPs: No SOPs

Data files: Metabolomics L-fuc vs D-glc

Snapshots: No snapshots

Created: 5th Feb 2015 at 11:51, Last updated: 8th Nov 2017 at 14:21

Proteome analysis: d-fuc / l-glu

SulfoSys - Biotec

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No description specified

Submitter: Theresa Kouril

Assay type: Proteomics

Technology type: Tandem Mass Spectrometry

Investigation: L-fucose degradation in Sulfolobus solfataricus P2

Study: Comparison of S. solfataricus grown on l-fucose...

Organisms: Sulfolobus solfataricus

SOPs: SULFOSYSbiotech_Proteome analysis

Data files: Proteomics L-fuc vs D-glc

Snapshots: No snapshots

Created: 5th Feb 2015 at 12:42, Last updated: 8th Nov 2017 at 14:21

Cell free extract activity measurements: L-fuc/d-glc

SulfoSys - Biotec

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No description specified

Submitter: Jacqueline Wolf

Assay type: Experimental Assay Type

Technology type: Enzymatic Activity Measurements

Investigation: L-fucose degradation in Sulfolobus solfataricus P2

Study: Comparison of S. solfataricus grown on l-fucose...

Organisms: Sulfolobus solfataricus

SOPs: No SOPs

Data files: Activity assay L-fuc vs D-glc

Snapshots: No snapshots

Created: 3rd Dec 2015 at 07:24, Last updated: 8th Nov 2017 at 14:21

PGK 30C model

SulfoSys, SulfoSys - Biotec

A model for the PGK reaction of yeast in presence or absence of the ATP recycling reactions

Submitter: Jacky Snoep

Biological problem addressed: Model Analysis Type

Investigation: Phosphoglycerate kinase acts as a futile cycle ...

Study: PGK-30C

Organisms: No organisms

Models: PGK yeast Fig1a, PGK yeast with/without recycling

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 28th Sep 2017 at 10:28, Last updated: 8th Nov 2017 at 14:21

BPG stability analysis

SulfoSys, SulfoSys - Biotec

BPG stability analysis

Submitter: Jacky Snoep

Biological problem addressed: Model Analysis Type

Investigation: Phosphoglycerate kinase acts as a futile cycle ...

Study: BPG stability

Organisms: No organisms

Models: BPG stability notebook

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 29th Sep 2017 at 13:01, Last updated: 8th Nov 2017 at 14:21

PGK 70C model

SulfoSys, SulfoSys - Biotec

PGK 70C model

Submitter: Jacky Snoep

Biological problem addressed: Model Analysis Type

Investigation: Phosphoglycerate kinase acts as a futile cycle ...

Study: PGK-70C

Organisms: No organisms

Models: PGK 70C, PGK 70C SBML

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 29th Sep 2017 at 13:08, Last updated: 8th Nov 2017 at 14:21

PGK - GAPDH models

SulfoSys, SulfoSys - Biotec

PGK - GAPDH models

Submitter: Jacky Snoep

Biological problem addressed: Model Analysis Type

Investigation: Phosphoglycerate kinase acts as a futile cycle ...

Study: PGK-GAPDH 30C & 70C

Organisms: No organisms

Models: PGK-GAPDH model Sulfolobus kouril8, PGK-GAPDH model yeast kouril7, PGK-GAPDH models yeast and Sulfolobus Fig. 4

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 29th Sep 2017 at 13:22, Last updated: 8th Nov 2017 at 14:21

Metabolic model of Sulfolobus solfataricus

SulfoSys - Biotec

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Genome scale metabolic model of Sulfolobus solfataricus specific scenario: modelling of L-fucose degradation pathways

Submitter: Jacqueline Wolf

Biological problem addressed: Metabolic Network

Investigation: L-fucose degradation in Sulfolobus solfataricus P2

Study: Comparison of S. solfataricus grown on l-fucose...

Organisms: Sulfolobus solfataricus

Models: Metabolic model of Sulfolobus solfataricus

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 3rd Dec 2015 at 07:41, Last updated: 8th Nov 2017 at 14:21

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