RNA-Seq raw data - Sulfolobus solfataricus P2 - casaminoacids and d-glucose Version 1
RNA-Seq raw data: Sulfolobus solfataricus P2 grown on casaminoacids and d-glucose.
SEEK ID: https://fairdomhub.org/data_files/1450?version=1
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CAS_GLU_fastq.zip
Format: Zip file
Size: 334 MB
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Additional credit
Andreas Albersmeier (CeBiTec, University of Bielefeld), Jörn Kalinowski (CeBiTec, University of Bielefeld)
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Created: 16th Aug 2016 at 11:03
Last updated: 18th Oct 2018 at 09:38
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Version 1 (earliest) Created 16th Aug 2016 at 11:03 by Stefan Albaum
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Projects: SulfoSys - Biotec
Institutions: University Bielefeld
e:Bio - Innovations Competition Systems Biology
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Web page: http://www.fona.de/en/14276
Within the e:Bio - Innovationswettbewerb Systembiologie (Federal Ministry of Education and Research (BMBF)), the SulfoSYSBIOTECH consortium (10 partners), aim to unravel the complexity and regulation of the carbon metabolic network of the thermoacidophilic archaeon Sulfolobus solfataricus (optimal growth at 80°C and pH 3) in order to provide new catalysts ‘extremozymes’ for utilization in White Biotechnology.
Based on the available S. solfataricus genome scale metabolic model (Ulas et al., 2012) ...
Programme: e:Bio
Public web page: http://www.sulfosys.com/
Integrated systems biology approach including transcriptome, metabolome, proteome analyses and modelling to elucidate amino acid degradation in S. solfataricus P2.
Submitter: Jacqueline Wolf
Studies: Comparison of Sulfolobus solfataricus P2 grown on caseinhydrolysate and ...
Assays: Metabolic modelling of S. solfataricus during growth on casaminoacids, Metabolome analysis: Casaminoacids versus D-Glc, Proteome analysis: Casaminoacids versus D-Glc, RNA sequencing: Casaminoacids vs D-glc
To investigate amino acid degradation pathways in Sulfolobus solfataricus transcriptome, proteome and metabolome analyses were performed on cells grown on caseinhydrolysate as carbon source. Cells grown with glucose served as reference condition. Metabolic modelling was used to compare the efficiency of different degradation routes.
Submitter: Jacqueline Wolf
Investigation: Amino acid degradation in Sulfolobus solfataric...
Assays: Metabolic modelling of S. solfataricus during growth on casaminoacids, Metabolome analysis: Casaminoacids versus D-Glc, Proteome analysis: Casaminoacids versus D-Glc, RNA sequencing: Casaminoacids vs D-glc
Submitter: Jacqueline Wolf
Assay type: RNA-seq Profiling
Technology type: Rna-seq
Investigation: Amino acid degradation in Sulfolobus solfataric...
