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Figure 5D
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Created: 22nd Aug 2018 at 15:32
Last used: 11th Apr 2021 at 10:45

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Projects: Millar group, TiMet
Institutions: University of Edinburgh

Projects: Millar group, TiMet, PHYTOCAL: Phytochrome Control of Resource Allocation and Growth in Arabidopsis and in Brassicaceae crops, POP - the Parameter Optimisation Problem, Regulation of flowering time in natural conditions, PlaSMo model repository
Institutions: University of Edinburgh

Roles: Project Coordinator, Vice Coordinator
Expertise: circadian rhythms, arabidopsis thaliana, Mathematical modelling, Data Management, Molecular Biology, Genetics, Deterministic modelling of gene regulation networks, Systems Biology
Tools: Transcriptomics, Proteomics, Deterministic models, Stochastic models, SBML
Andrew Millar's research group, University of Edinburgh
Programme: SynthSys
Public web page: http://www.amillar.org
Organisms: Escherichia coli, Arabidopsis thaliana, Ostreococcus tauri
Data, models and simulations for the Chew et al. 2014 paper (PNAS, https://doi.org/10.1073/pnas.1410238111), using wild-type Arabidopsis ecotype Col-0 in standard 12hL:12hD growth conditions, compared to La(er) or Fei-0 accessions, or to plants overexpressing a micro RNA (miR156).
Snapshots: No snapshots
Studies: Construction of Framework Model v1, Test of FMv1, growth study of Col-0 accession in 12L:12D, Test of FMv1, growth study of Col-0 accession in 5 photoperiods, Test of FMv1, growth study of other accessions and transgenic line in 12...
Assays: Arabidopsis Framework Model v1, Matlab and Simile version, Gas exchange of Fei-0 and Ler plants in 12hL:12hD, Growth of Col-0 and 35S:miR156 plants in 12hL:12hD, Growth of Col-0 in 12hL:12hD, Growth of Col-0 plants in 5 photoperiods, Growth of Fei-0 and Ler plants in 12hL:12hD
Standard growth conditions and 'wild-type' Arabidopsis accessions other than Col-0 and the 35S:miR156 transgenics, with biomass data for whole rosettes, and in some cases, individual leaf area and leaf biomass data
Person responsible: Andrew Millar
Snapshots: No snapshots
Data for Figures 5D-5F and Supplementary Figure 7B, 7C, including biomass and leaf areas. Image data for leaf areas are included in a .ZIP archive, with two samples as published in 5D. The 'Summary' sheets in the XLSX files include published graphs. Simulation data are included from FMv1.
These data were acquired in April 2014, in a separate experiment from the La(er) and Fei-0.
Experimental conditions: ∼20.7 °C constant temperature; 12h:12h light/dark cycle; light intensity = 100μmol·m−2·s−1;
...
Submitter: Andrew Millar
Assay type: Cultivation Experiment
Technology type: Cultivation experiment
Snapshots: No snapshots
Investigation: Arabidopsis Framework Model v1, predicting rose...
Study: Test of FMv1, growth study of other accessions ...
Organisms: Arabidopsis thaliana : Col-0 wild type (wild-type / wild-type), Arabidopsis thaliana : Pro35S:MIR156 transgenic Arabidopsis (wild-type / wild-type)
SOPs: No SOPs
Data files: 35S:miR156 rosette image, Biomass and area of Col-0 and 35S:miR156 Arabid..., Col-0 rosette image, 37 days old, Data images of Arabidopsis Col-0 and 35S:miR156..., Environmental monitoring data for growth room d..., Leaf number in Col-0 and 35S:miR156 Arabidopsis...