D.SEQ-samples-publish2022-10-25_19-32.xlsx
SRR18609419
Constantine Nicholas Tzouanas
24 October 2019
P.SHA-220819-V1_SeqWellHughes.et.al.Master.Protocol.pdf
https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR18609419/SRR18609419
125b27c7fb78124e9ad070404cd3aafd;c1c45e5cc96d2483d697ec80c65ae531
DNA-220823SHA-4
FASTQ
Single Cell RNA Sequencing
Illumina NextSeq 550
20
50
478293113
scRNA-Seq
transcriptomic
cDNA
total RNA
Paired end

Views: 141
Created: 25th Oct 2022 at 17:30

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- Investigations (1)
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- Assays (2)
- Data files (1)
- Sample types (1)
Institutions: Massachusetts Institute of Technology
Projects: IMPAcTB
Web page: https://www.niaid.nih.gov/research/immune-mechanisms-protection-mycobacterium-tuberculosis
Submitter: Dikshant Pradhan
Studies: Fc-FcγR interactions shift alveolar macrophage metabolism to promote Myc..., Fc-engineered antibodies leverage neutrophils to drive control of Mycoba..., Immune cells in bronchoalveolar lavage fluid of Ugandan adults who resis..., Multimodal profiling of lung granulomas in macaques reveals cellular cor..., Robust IgM responses following intravenous vaccination with Bacille Calm..., T cell signatures of bacterial control among M. tuberculosis 'resisters'
Assays: Anti-Microbial Assay – Metadata, Flow Cytometry - Data Linked, Flow Cytometry Analysis - Data Linked, Flow Cytometry Processing – Data Attached, Flow Cytometry – Data Linked, Functional Assay – Metadata, Immunohistochemistry – Data Linked, Library Creation – Metadata, Luminex Assay – Metadata, Luminex Data Processing – Data Attached, NHP Necropsy – Metadata, NHP Tissue Collection – Metadata, PET-CT Scan Analysis – Data Linked, PET-CT Scan – Data Linked, Patient Visit - Metadata, Patient Visit – Metadata, Patient Visit – Metadata, Single Cell Clustering Analysis – Data Linked, Single Cell Expression Matrix Analysis – Data Linked, Single Cell Sequencing Analysis – Data Linked, Single Cell Sequencing – Data Linked, Single Cell Sequencing – Data Linked, Tissue Collection - Metadata, Tissue Collection - Metadata, Tissue Extraction – Metadata
Snapshots: No snapshots
Hannah P.Gideon, Travis K.Hughes, Constantine N.Tzouanas, Marc H.WadsworthII, Ang AndyTu, Todd M.Gierahn, Joshua M.Peters, Forrest F.Hopkins, Jun-RongWei, Conner Kummerlowe, Nicole L.Grant, Kievershen Nargan, Jia YaoPhuah, H. JacobBorish, Pauline Maiello, Alexander G.White, Caylin G.Winchell, Sarah K.Nyquist, Sharie Keanne C.Ganchua, Amy Myers, Kush V.Patel, Cassaundra L.Ameel, Catherine T.Cochran, Samira Ibrahim, Jaime A.Tomko, Lonnie JamesFrye, Jacob ...
Submitter: Dikshant Pradhan
Investigation: IMPAcTB
Assays: Immunohistochemistry – Data Linked, Library Creation – Metadata, NHP Necropsy – Metadata, PET-CT Scan Analysis – Data Linked, PET-CT Scan – Data Linked, Patient Visit – Metadata, Single Cell Clustering Analysis – Data Linked, Single Cell Expression Matrix Analysis – Data Linked, Single Cell Sequencing – Data Linked
Snapshots: Snapshot 1
Submitter: Jake Schissel
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: IMPAcTB
Organisms: No organisms
SOPs: P.SHA-220819-V1_SeqWellHughes.et.al.Master.Prot...
Data files: D.SEQ-samples-publish2022-10-25_19-32.xlsx, DNA-samples-publish2022-10-18_00-56.xlsx
Snapshots: No snapshots
Submitter: Jake Schissel
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: IMPAcTB
Organisms: No organisms
SOPs: P.SHA-220912-V1_Drop-seq_Alignment_Cookbook.pdf
Data files: A.SCXP-samples-publish2022-10-25_21-23.xlsx, D.SEQ-samples-publish2022-10-25_19-32.xlsx
Snapshots: No snapshots
Creators: None
Submitter: Jake Schissel
Investigations: IMPAcTB
Studies: Multimodal profiling of lung granulomas in maca...
Assays: Single Cell Expression Matrix Analysis – Data L..., Single Cell Sequencing – Data Linked
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Not specified