Sample types
What is a Sample type?Filters
UID (Text) *, Parent (Text) , Scientist (Text) , SampleCreationDate (Text) , Protocol (URI) , Type (Text) , Name (Text) , Reference (Text) , CollectionDate (Text) , CollectionTime (Text) , Region (Text) , DWTP (Text) , SourceTap (Text) , FlushDurationMinutes (Text) , Replicate (Text) , FieldBlank (Text) , TreatmentType (Text) , BottleType (Text) , VolumeCollectedL (Text) , Dechlorinated (Text) , DechlorinationAgent (Text) , DechlorinationDoseMgPerL (Text) , RecoveryStandard (Text) , RecoveryStandardConcNgPerL (Text) , RecoveryStandardAddedWithinHours (Text) , StorageTempC (Text) , StoredOnIceInField (Text) , ExtractionWindowDaysMax (Text) , Lab (Text)
Not specified
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Parent (Text) , Scientist (Text) , Protocol (URI) , Type (Text) , Notes (Text) , Description (Text) , TrainingDatasets (Text) , AdditionalData (Text) , AdditionalData_Link (URI) , Repository (Text) , RepositoryLink (URI)
Not specified
UID (Text) *, Scientist (Text) , SampleCreationDate (Text) , Notes (Text) , Name (Text) , LocationType (Text) , Description (Text) , GPS (Text) , GPSUnits (Text)
Not specified
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Parent (Text) , Scientist (Text) , Protocol (URI) , Type (Text) , Checksum_PrimaryData (Text) , Checksum_PrimaryType (Text) , Name (Text) , Reference (Text) , Lab (Text)
Not specified
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Parent (Text) , Scientist (Text) , SampleCreationDate (Text) , Protocol (URI) , Type (Text) , Solvent (Text) , Instrument (Text) , Checksum_PrimaryData (Text) , Mode (Text) , Notes (Text) , Checksum_PrimaryType (Text) , MeasurementType (Text) , Name (Text) , Path_PrimaryData (Text) , Detector (Text) , Software (Text) , Ionization (Text)
Not specified
UID (Text) *, Parent (Text) , Scientist (Text) , SampleCreationDate (Text) , Protocol (URI) , Type (Text) , Notes (Text) , Name (Text) , Reference (Text) , Lab (Text) , IUPAC Name (Text) , SMILES (Text) , Formula (Text) , CASNumber (Text) , Concentration (Text) , ConcUnits (Text) , ReferenceCompound (Text)
Not specified
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Parent (Text) , Scientist (Text) , SampleCreationDate (Text) , Protocol (URI) , Type (Text) , Checksum_PrimaryData (Text) , Checksum_PrimaryType (Text) , Software (Text) , File_SecondaryData (Text) , Link_SecondaryData (Text) , Checksum_SecondaryData (Text) , Checksum_SecondaryType (Text)
Not specified
This sample is used to upload data files in batch to SEEK. It is not used often and doesn't contain much useful metadata
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (Text) , Checksum_PrimaryData (Text) , Scientist (Text) , SampleCreationDate (Date) , Parent (Text) , Protocol (Text) , Software (Text)
Not specified
A non-human primate sample originates from an organism closely related to humans within the primate order. These samples are collected to study biological processes that share genetic and physiological similarities with human systems. Each reflects controlled collection and handling specific to the species and study design.
UID (Text) *, Name (Text) *, ID (Text) , DateOfBirth (Date) , Sex (Text) , Species (Text) , Origin (Text) , SourceFacility (Text) , Notes (Text) , Contact (Text) , Scientist (Text) , CoScientist (Text) , Publish_uri (Text) , Treatment1 (Text) , Treatment1Type (Text) , Treatment1Route (Text) , Treatment1Date (Date) , Treatment1Dose (Real number) , Treatment1DoseUnits (Text) , Treatment2 (Text) , Treatment2Type (Text) , Treatment2Route (Text) , Treatment2Date (Date) , Treatment2Dose (Real number) , Treatment2DoseUnits (Text) , NecropsyDate (Date) , Cohort (Text)
Not specified
A cell extract sample contains the soluble contents or fractions derived from lysed cells. It provides material for studying protein expression, enzymatic activity, or molecular interactions.
UID (Text) *, Name (Text) *, Scientist (Text) , StorageLocation (Text) , StorageSite (Text) , SampleCreationDate (Date) , Protocol (Text) , Parent (Text) , Type (Text) , TreatmentType (Text) , Treatment (Text) , TreatmentDose (Real number) , TreatmentDoseUnits (Text) , TreatmentTime (Real number) , TreatmentTimeUnits (Text) , Volume (Real number) , VolumeUnits (Text) , Concentration (Real number) , ConcentrationUnits (Text) , Note (Text) , CollectionTime (Real number) , CollectionTimeUnits (Text)
Not specified
A Luminex data file contains multiplexed fluorescence intensity measurements generated by bead-based assays. It represents the digital output used to quantify multiple proteins, cytokines, or analytes simultaneously. Typical file types: .csv, .xlsx, .xml
UID (Text) *, File_PrimaryData (Text) *, Link_PrimaryData (Text) , Checksum (Text) , Scientist (Text) , SampleCreationDate (Date) , Protocol (Text) , Parent (Text) , Panel (Text) , Analyte (Text) , Instrument (Text)
Not specified
A Luminex analysis file contains processed results from multiplexed bead-based assays. It represents summarized analyte concentrations or normalized fluorescence values derived from raw Luminex data. Each file often aggregates multiple wells or samples into a unified dataset (many→1). Typical file types: .csv, .xlsx
UID (Text) *, Name (Text) *, File_PrimaryData (Text) *, Link_PrimaryData (Text) , Checksum_PrimaryData (Text) , Scientist (Text) , SampleCreationDate (Date) , Parent (Text) , Protocol (Text) , Software (Text) , QC_notes (Text)
Not specified
A mouse sample represents an experimental animal used as a model system. Mice may be exposed to specific treatments or conditions, and tissues or cells are collected from them for downstream analysis.
UID (Text) *, Name (Text) *, Scientist (Text) *, Protocol (Text) , DateOfBirth (Date) , Sex (Text) , Strain (Text) , StrainReference (Text) , Genotype (Text) , Phenotype (Text) , StorageType (Text) , StorageLocation (Text) , StorageSite (Text) , Source (Text) , SourceFacility (Text) , ParentM (Text) , ParentF (Text) , Treatment1Type (Text) , Treatment1 (Text) , Treatment1Route (Text) , Protocol_Treatment1 (Text) , Treatment1Reference (Text) , Treatment1Dose (Real number) , Treatment1Units (Text) , Treatment1Time (Real number) , Treatment1TimeUnits (Text) , Treatment2Type (Text) , Treatment2 (Text) , Treatment2Route (Text) , Protocol_Treatment2 (Text) , Treatment2Reference (Text) , Treatment2Dose (Real number) , Treatment2Units (Text) , Treatment2Time (Real number) , Treatment2TimeUnits (Text) , SacrificeDate (Date) , Notes (Text) , Disease (Text) , DiseaseReference (Text) , DiseaseStage (Text)
Not specified
A tissue sample represents a portion of biological material collected from an organism. It serves as the source for downstream molecular, cellular, or histological analyses.
UID (Text) *, Name (Text) *, Scientist (Text) *, SampleCreationDate (Date) , Protocol (Text) , Parent (Text) , Type (Text) , CollectionTime (Real number) , CollectionTimeUnits (Text) , Mass (Real number) , MassUnits (Text) , Organ (Text) , OrganDetail (Text) , StorageSite (Text) , StorageLocation (Text) , StorageType (Text) , BALCollectedVolume (Real number) , BALCollectedVolumeUnits (Text) , BALInstilledVolume (Real number) , BALInstilledVolumeUnits (Text) , Volume (Real number) , VolumeUnits (Text) , CellCount (Real number) , Notes (Text) , StudyID (Text) , SampleCollectionDate (Date) , Contact (Text)
Not specified
A sequencing file contains raw nucleotide sequence reads and their quality scores. It represents the digital output from a DNA or RNA sequencing run and serves as the starting point for downstream analyses such as alignment or variant calling. Typical file type: .fastq or .fastq.gz
UID (Text) *, Name (Text) , File_PrimaryData (Text) , Scientist (Text) , SampleCreationDate (Date) , Protocol (Text) , Link_PrimaryData (Text) , Parent (Text) , DataType (Text) , SequencingType (Text) , QCPlatform (Text) , QCAssay (Text) , Sequencer (Text) , ClusterDate (Date) , AnalyzedDate (Date) , CompleteDate (Date) , F_bp (Real number) , R_bp (Real number) , IndexInlineStartNT (Real number) , IndexInlineLength (Real number) , NumReads (Real number) , MaxReads (Real number) , TotalReads (Real number) , NumAligned (Real number) , 20mers (Real number) , Primer (Text) , FlowLane (Text) , PrepUser (Text) , Contamination (Text) , Notes (Text) , ReagentManufacturer (Text) , ReagentCatalogNum (Text) , LibraryStrategy (Text) , LibrarySource (Text) , LibrarySelection (Text) , ExpressionKit (Text) , ExtractedMolecule (Text)
Not specified
A non-human primate sample originates from an organism closely related to humans within the primate order. These samples are collected to study biological processes that share genetic and physiological similarities with human systems. Each reflects controlled collection and handling specific to the species and study design.
UID (Text) *, Name (Text) *, DateOfBirth (Date) , Sex (Text) , Species (Text) , Origin (Text) , Facility (Text) , Scientist (Text) , Cohort (Text) , Supplier (Text) , Protocol (Text)
Not specified
A tissue sample represents a portion of biological material collected from an organism. It serves as the source for downstream molecular, cellular, or histological analyses.
UID (Text) *, Name (Text) *, Scientist (Text) , SampleCreationDate (Date) , Protocol (Text) , Protocol2 (Text) , Protocol3 (Text) , Parent (Text) , Type (Text) , Organ (Text) , OrganDetail (Text) , CFU (Real number) , CFUUnits (Text) , CEQ (Real number) , CEQUnits (Text) , CFU/CEQ (Real number) , CFU/CEQUnits (Text) , TimeOfDetection (Text)
Not specified
A DNA sample contains extracted genetic material isolated from a biological source. It serves as input for sequencing, amplification, or other genomic analyses.
UID (Text) *, Name (Text) *, Protocol (Text) , Protocol2 (Text) , SampleCreationDate (Date) , Scientist (Text) , Parent (Text) , Type (Text) , BarcodeType (Text) , NumPrepCycles (Real number) , Lab (Text)
Not specified
A sequencing file contains raw nucleotide sequence reads and their quality scores. It represents the digital output from a DNA or RNA sequencing run and serves as the starting point for downstream analyses such as alignment or variant calling. Typical file type: .fastq or .fastq.gz
UID (Text) *, File_PrimaryData (Text) , Scientist (Text) , SampleCreationDate (Date) , Protocol (Text) , Link_PrimaryData (Text) , Checksum_PrimaryData (Text) , Parent (Text) , DataType (Text) , SequencingType (Text) , Sequencer (Text) , F_bp (Real number) , R_bp (Real number) , NumReads (Text) , LibraryStrategy (Text) , LibrarySource (Text) , LibrarySelection (Text) , ExtractedMolecule (Text) , LibraryDesign (Text)
Not specified
A single cell clustering analysis file contains processed results grouping cells based on shared expression profiles. It represents the interpreted output used to define cellular subpopulations and visualize transcriptomic structure. Each file summarizes results derived from many single-cell inputs (many→1). Typical file types: .csv, .rds, .h5ad
UID (Text) *, Name (Text) , File_PrimaryData (Text) , Link_PrimaryData (Text) , SampleCreationDate (Date) , DataType (Text) , Protocol (Text) , Parent (Text) , Scientist (Text) , Lab (Text) , Checksum_PrimaryData (Text) , Software (Text)
Not specified
An imaging data file stores visual or spatial information captured from microscopy, radiography, or other imaging systems. It represents the raw or processed image output used for structural or morphological analysis. Typical file types: .tiff, .jpg, .png, .ome.tiff
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (Text) , Scientist (Text) , Protocol (Text) , Parent (Text) , Instrument (Text) , Instrument2 (Text)
Not specified
A CT scan analysis file contains processed imaging data or quantitative measurements derived from computed tomography scans. It represents reconstructed images, segmented structures, or volumetric features used for interpretation. Each file typically summarizes one scan or patient dataset (1→1). Typical file types: .nii, .dcm, .csv
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (Text) , Checksum_PrimaryData (Text) , Lab (Text) , Scientist (Text) , Software (Text) , Parent (Text)
Not specified
An antibody sample contains purified immune proteins that specifically recognize and bind to target molecules. These samples are used in experimental procedures that detect, label, or isolate biological components. Each antibody is defined by its binding specificity, source, and production method.
UID (Text) *, Name (Text) , Catalog# (Text) , Vendor (Text) , Analyte (Text) , Clone (Text) , Reporter (Text) , RRID (Text)
Not specified
An antibody panel sample represents a curated collection of antibodies used for detection or labeling in assays. It defines the set of reagents applied to measure or visualize specific proteins, cells, or molecular targets. This sample type is used to link AB's together into a single UID
UID (Text) *, Name (Text) , Parent (Text) , Protocol (Text) , Scientist (Text)
Not specified
A patient visit record represents a specific encounter or collection event for a study participant. It provides temporal and contextual information linking biological samples or data files to a particular time point, condition, or intervention.
UID (Text) *, Name (Text) *, Scientist (Text) , Protocol (Text) , Type (Text) , Parent (Text) , VisitFacility (Text) , SampleCreationDate (Date) , Treatment1 (Text) , Treatment1Type (Text) , Treatment1Route (Text) , Treatment1Dose (Real number) , Treatment1DoseUnits (Text) , Procedure (Text)
Not specified
A single cell expression matrix file contains processed gene expression counts for individual cells. It represents the normalized matrix used for downstream dimensionality reduction, clustering, or differential expression analysis. Each file integrates thousands of single-cell measurements into one dataset (many→1). Typical file types: .h5ad, .mtx, .csv
UID (Text) *, Name (Text) , File_PrimaryData (Text) , Link_PrimaryData (Text) , SampleCreationDate (Text) , Scientist (Text) , DataType (Text) , Barcodes (Text) , BarcodesDataType (Text) , Genes (Text) , GenesDataType (Text) , Metadata (Text) , MetadataDataType (Text) , Protocol (Text) , Parent (Text) , Lab (Text) , Repository (Text) , Accession (Text) , Checksum_PrimaryData (Text) , Checksum_Barcodes (Text) , Checksum_Genes (Text) , Checksum_Metadata (Text)
Not specified
An antibody panel sample represents a curated collection of antibodies used for detection or labeling in assays. It defines the set of reagents applied to measure or visualize specific proteins, cells, or molecular targets. This sample type is used to link AB's together into a single UID
UID (Text) *, Name (Text) , Parent (Text) , Scientist (Text)
Not specified
A non-human primate sample originates from an organism closely related to humans within the primate order. These samples are collected to study biological processes that share genetic and physiological similarities with human systems. Each reflects controlled collection and handling specific to the species and study design.
UID (Text) *, Name (Text) , DateOfBirth (Text) , Sex (Text) , Species (Text) , Origin (Text) , Facility (Text) , ID (Text) , Scientist (Text) , Cohort (Text) , Protocol (URI) , Study (Text) , Funder (Text) , TotalCFU (Text) , LungCFU (Text) , LymphNodeCFU (Text) , TotalPathologyScore (Text) , LungPathologyScore (Text) , LymphNodePathologyScore (Text) , CFUUnits (Text)
Not specified
An antibody sample contains purified immune proteins that specifically recognize and bind to target molecules. These samples are used in experimental procedures that detect, label, or isolate biological components. Each antibody is defined by its binding specificity, source, and production method.
UID (Text) *, Name (Text) , Catalog# (Text) , Vendor (Text) , Analyte (Text) , Clone (Text) , RRID (Text) , ExperimentType (Text) , CatalogLink (Web link)
Not specified
A bacteria sample represents a microbial strain used in an experiment, either as an infectious agent or as material isolated from another biological source. It serves as a basis for studying host interactions, gene expression, or microbial composition.
UID (Text) *, Name (Text) , Scientist (Text) , Species (Text) , Morphology (Text) , Strain (Text) , TaxonomyID (Text) , GramStaining (Text) , Barcode (Text) , Qtag (Text)
Not specified
A tissue sample represents a portion of biological material collected from an organism. It serves as the source for downstream molecular, cellular, or histological analyses.
UID (Text) *, Name (Text) , Scientist (Text) , SampleCreationDate (Text) , Protocol (Web link) , Parent (Registered Sample - PAV - CD8.2) , Type (Text) , Organ (Text) , OrganDetail (Text) , CFU (Text) , CFUUnits (Text)
Not specified
A bacteria sample represents a microbial strain used in an experiment, either as an infectious agent or as material isolated from another biological source. It serves as a basis for studying host interactions, gene expression, or microbial composition.
UID (Text) *, Name (Text) , Scientist (Text) , Protocol (Web link) , SampleCreationDate (Text) , Parent (Registered Sample - TIS - CD8) , Note (Text) , Lab (Text)
Not specified
A DNA sample contains extracted genetic material isolated from a biological source. It serves as input for sequencing, amplification, or other genomic analyses.
UID (Text) *, Name (Text) , Protocol (Web link) , SampleCreationDate (Text) , Scientist (Text) , Parent (Registered Sample - TIS - CD8) , Type (Text) , Barcode (Text) , BarcodeType (Text) , Barcode2 (Text) , Barcode2Type (Text) , NumPrepCycles (Text) , Lab (Text)
Not specified
A DNA sample contains extracted genetic material isolated from a biological source. It serves as input for sequencing, amplification, or other genomic analyses.
UID (Text) *, Name (Text) , Protocol (URI) , SampleCreationDate (Text) , Scientist (Text) , Parent (Registered Sample - BAC DBMM - CD8) , Type (Text) , Barcode (Text) , BarcodeType (Text) , Lab (Text)
Not specified
A sequencing file contains raw nucleotide sequence reads and their quality scores. It represents the digital output from a DNA or RNA sequencing run and serves as the starting point for downstream analyses such as alignment or variant calling. Typical file type: .fastq or .fastq.gz
UID (Text) *, Name (Text) , File_PrimaryData (Text) , Scientist (Text) , SampleCreationDate (Text) , Protocol (Web link) , Link_PrimaryData (URI) , Parent (Registered Sample - DNA -TIS-CD8) , DataType (Text) , SequencingType (Text) , Sequencer (Text) , F_bp (Text) , R_bp (Text) , NumReads (Text) , LibraryStrategy (Text) , LibrarySource (Text) , LibrarySelection (Text) , ExtractedMolecule (Text) , Checksum_PrimaryData (Text) , File_SecondaryData (Text) , LibraryDesign (Text) , Accession (Text) , Repository (Text) , Checksum_SecondaryData (Text) , Link_SecondaryData (Web link) , Checksum_Type (Text)
Not specified
A sequencing file contains raw nucleotide sequence reads and their quality scores. It represents the digital output from a DNA or RNA sequencing run and serves as the starting point for downstream analyses such as alignment or variant calling. Typical file type: .fastq or .fastq.gz
UID (Text) *, Name (Text) , File_PrimaryData (Text) , Scientist (Text) , SampleCreationDate (Text) , Protocol (URI) , Link_PrimaryData (Web link) , Parent (Registered Sample - DNA -BAC-CD8) , DataType (Text) , SequencingType (Text) , Sequencer (Text) , F_bp (Text) , R_bp (Text) , LibraryStrategy (Text) , LibrarySource (Text) , LibrarySelection (Text) , Checksum_PrimaryData (Text) , File_SecondaryData (Text) , Link_SecondaryData (URI) , LibraryDesign (Text) , Accession (Text) , Repository (Text) , Checksum_SecondaryData (Text) , Checksum_Type (Text)
Not specified
An antibody sample contains purified immune proteins that specifically recognize and bind to target molecules. These samples are used in experimental procedures that detect, label, or isolate biological components. Each antibody is defined by its binding specificity, source, and production method.
UID (Text) *, Name (Text) , Catalog# (Text) , Vendor (Text) , Analyte (Text) , Clone (Text) , Fluorophore (Text) , ExperimentType (Text) , Isotype (Text) , CatalogLink (Web link)
Not specified
A digitally barcoded MTB matrix analysis file contains processed results from barcoded Mycobacterium tuberculosis tracking experiments. It represents summarized abundance or distribution data across bacterial lineages or host conditions. Each file aggregates results from multiple barcoded samples into one matrix (many→1). Typical file types: .csv, .xlsx
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , DataType (Text) , Parent (Text) , Lab (Text) , Scientist (Text) , Checksum_PrimaryData (Text) , BacterialParent (Text) , Checksum_Type (Text)
Not specified
A flow cytometry file stores fluorescence and light-scattering measurements collected from individual cells or particles during cytometric analysis. It represents the digital output of a cytometer used to characterize cell populations and properties. Typical file type: .fcs
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Scientist (Text) , SampleCreationDate (Text) , Parent (Registered Sample - TIS - CD8) , Protocol (URI) , Instrument (Text) , Checksum_PrimaryData (Text) , Software (Text) , Fixation (Text) , Stimulation (Text) , AntibodyParent (Text) , Type (Text) , Repository (Text) , RepositoryID (Text) , Checksum_PrimaryType (Text)
Not specified
A flow cytometry analysis file contains processed results derived from raw cytometry data. It represents quantified cell populations, marker expression levels, or gating outcomes used for downstream statistical interpretation. Each file typically aggregates data from multiple raw samples into one analyzed dataset (many→1). Typical file types: .csv, .xlsx, .fcs
UID (Text) *, Name (Text) , File_PrimaryData (Text) , Link_PrimaryData (URI) , Checksum_PrimaryData (Text) , Parent (Text)
Not specified
An antibody sample contains purified immune proteins that specifically recognize and bind to target molecules. These samples are used in experimental procedures that detect, label, or isolate biological components. Each antibody is defined by its binding specificity, source, and production method.
UID (Text) *, Name (Text) , Catalog# (Text) , Vendor (Text) , Analyte (Text) , Fluorophore (Text) , ExperimentType (Text) , Isotype (Text) , SecondaryAntibody (Text) , SecondaryAntibodyLink (URI) , CatalogLink (URI)
Not specified
An imaging data file stores visual or spatial information captured from microscopy, radiography, or other imaging systems. It represents the raw or processed image output used for structural or morphological analysis. Typical file types: .tiff, .jpg, .png, .ome.tiff
UID (Text) *, File_PrimaryData (Text) , Checksum_PrimaryData (Text) , Link_PrimaryData (URI) , Scientist (Text) , Protocol (URI) , Parent (Registered Sample - TIS - CD8) , Type (Text) , Instrument (Text) , DataType (Text) , SlideStain (Text) , SlideAntibodyParent (Text)
Not specified
An imaging data file stores visual or spatial information captured from microscopy, radiography, or other imaging systems. It represents the raw or processed image output used for structural or morphological analysis. Typical file types: .tiff, .jpg, .png, .ome.tiff
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (Web link) , Scientist (Text) , Protocol (URI) , SampleCreationDate (Text) , Parent (Registered Sample - PAV - CD8.2) , Type (Text) , Notes (Text) , Instrument (Text) , DataType (Text) , PETHot (Text) , PETHotUnits (Text) , Checksum_PrimaryType (Text)
Not specified
A patient visit record represents a specific encounter or collection event for a study participant. It provides temporal and contextual information linking biological samples or data files to a particular time point, condition, or intervention.
UID (Text) *, Name (Text) , Scientist (Text) , Protocol (Web link) , Type (Text) , Parent (Registered Sample - NHP - CD8) , VisitFacility (Text) , Notes (Text) , SampleCreationDate (Text) , Treatment1 (Text) , Treatment1Type (Text) , Treatment1Route (Text) , Treatment1Dose (Text) , Treatment1DoseUnits (Text) , AntibodyParent (Registered Sample - AB Depletion - CD8) , BacterialParent (Registered Sample - BAC Infection - CD8)
Not specified
A single cell expression matrix file contains processed gene expression counts for individual cells. It represents the normalized matrix used for downstream dimensionality reduction, clustering, or differential expression analysis. Each file integrates thousands of single-cell measurements into one dataset (many→1). Typical file types: .h5ad, .mtx, .csv
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , SampleCreationDate (Text) , Scientist (Text) , DataType (Text) , BarcodesDataType (Text) , Protocol (URI) , Parent (Registered Sample - D.SEQ-TIS - CD8) , Lab (Text) , Checksum_PrimaryData (Text) , Checksum_Type (Text)
Not specified
A patient sample represents a human participant enrolled in a study. It serves as the source for clinical information and biological material collected to investigate health, disease, or treatment effects.
UID (Text) *, Name (Text) , Scientist (Text) , Contact (Text) , Notes (Text) , Sex (Text) , Classification (Text) , Study (Text) , Age (Text) , Ethnicity (Text) , DiseaseHistory (Text) , TimeToTB (Text) , TimeToTBUnits (Text) , QFT_Result (Text) , TST_Result (Text) , Smear_Result (Text) , MGITCulture_Result (Text) , Symptoms (Text) , SubjectLocation (Text)
Not specified
A patient visit record represents a specific encounter or collection event for a study participant. It provides temporal and contextual information linking biological samples or data files to a particular time point, condition, or intervention.
UID (Text) *, Name (Text) , Type (Text) , Parent (Registered Sample - PAT - LD) , Protocol (URI) , Scientist (Text) , Procedure (Text)
Not specified
A tissue sample represents a portion of biological material collected from an organism. It serves as the source for downstream molecular, cellular, or histological analyses.
UID (Text) *, Name (Text) , Parent (Registered Sample - PAV - LD) , Protocol (URI) , Type (Text) , Scientist (Text)
Not specified
A titer assay data file contains quantitative measurements of antibody or viral concentrations from serial dilution experiments. It represents the processed output used to assess immune response or viral load. Typical file types: .csv, .xlsx
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (Text) , Checksum_PrimaryData (Text) , Parent (Text) , Type (Text) , Dilution (Text) , Scientist (Text) , Protocol (URI) , Bead_Vendor (Text) , Bead_coating (Text) , Bead_coating_vendor (Text) , anti_IgX_Ab (Text) , anti_IgX_Ab_vendor (Text) , Detection_Ab (Text) , Analyzer (Text) , Analyzer_Vendor (Text) , Lab (Text)
Not specified
An Fc-gamma receptor binding assay data file records binding measurements between antibodies and Fc-gamma receptors. It represents the output used to evaluate antibody effector function and receptor affinity. Typical file types: .csv, .xlsx
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (Text) , Checksum_PrimaryData (Text) , Protocol (URI) , Parent (Text) , Dilution (Text) , Scientist (Text) , Bead_Vendor (Text) , Bead_coating_Vendor (Text) , Bead_coating (Text) , Fc_gamma_Receptor (Text) , Fc_gamma_Receptor_Vendor (Text) , Biotin (Text) , Biotin_Vendor (Text) , Biotin_Catalog# (Text) , Fluoro-Streptavidine (Text) , Fluoro-Streptavidine_Vendor (Text) , Analyzer (Text) , Analyzer_Vendor (Text) , Lab (Text)
Not specified
An antibody dependent neutrophil phagocytosis data file records quantitative measurements of antibody-mediated uptake by neutrophils. It represents the processed output used to evaluate innate immune activation. Typical file types: .csv, .xlsx
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (Text) , Checksum_PrimaryData (Text) , Protocol (URI) , Scientist (Text) , Parent (Text) , Dilution (Text) , Bead_coating (Text) , Leukocytes (Text) , Staining_Antibody (Text) , Staining_Antibody_Vendor (Text) , Staining_Antibody_Fluorophore (Text) , Analyzer (Text) , Analyzer_Vendor (Text) , Fixed (Text) , Fixative (Text) , Lab (Text)
Not specified
An antibody dependent cellular phagocytosis data file contains measurements of target cell uptake mediated by antibody opsonization. It represents the digital output used to assess immune cell function and antibody efficacy. Typical file types: .csv, .xlsx
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (Text) , Checksum_PrimaryData (Text) , Protocol (URI) , Scientist (Text) , Parent (Text) , Dilution (Text) , Bead_Vendor (Text) , Bead_Coating (Text) , PhagocyticCells (Text) , PhagocyticCells_Vendor (Text) , PhagocyticCells_Catalog# (Text) , Analyzer (Text) , Analyzer_Vendor (Text) , Fixed (Text) , Fixative (Text) , Lab (Text)
Not specified
A linear mixed model file contains statistical outputs from models that include both fixed and random effects. It represents results used to analyze complex datasets with repeated measures or hierarchical structure. Each file typically summarizes modeled results from multiple input datasets (many→1). Typical file types: .rds, .csv, .txt
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Scientist (Text) , Parent (Text) , Type (Text)
Not specified
A non-human primate sample originates from an organism closely related to humans within the primate order. These samples are collected to study biological processes that share genetic and physiological similarities with human systems. Each reflects controlled collection and handling specific to the species and study design.
UID (Text) *, Name (Text) , DateOfBirth (Text) , Sex (Text) , Species (Text) , Origin (Text) , Scientist (Text) , Supplier (Text) , Protocol (URI)
Not specified
A patient visit record represents a specific encounter or collection event for a study participant. It provides temporal and contextual information linking biological samples or data files to a particular time point, condition, or intervention.
UID (Text) *, Name (Text) , Scientist (Text) , Type (Text) , Protocol (URI) , Procedure (Text) , Parent (Registered Sample - NHP - EI-Dose) , Notes (Text) , SampleCreationDate (Text) , Treatment1 (Text) , Treatment1Type (Text) , Treatment1Route (Text) , Treatment1Dose (Text) , Treatment1DoseUnits (Text) , ExperimentalTimepoint (Text)
Not specified
A tissue sample represents a portion of biological material collected from an organism. It serves as the source for downstream molecular, cellular, or histological analyses.
UID (Text) *, Name (Text) , Protocol (URI) , Scientist (Text) , SampleCreationDate (Text) , Parent (Registered Sample - PAV - EI-Dose) , Type (Text) , Organ (Text) , OrganDetail (Text) , Notes (Text) , NumVials (Text)
Not specified
A titer assay data file contains quantitative measurements of antibody or viral concentrations from serial dilution experiments. It represents the processed output used to assess immune response or viral load. Typical file types: .csv, .xlsx
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Checksum_PrimaryData (Text) , Protocol (URI) , SampleCreationDate (Text) , Scientist (Text) , Parent (Text) , Bead_Vendor (Text) , Bead_Catalog# (Text) , Bead_coating (Text) , Bead_coating_vendor (Text) , Bead_coating_Catalog# (Text) , anti_IgX_Ab (Text) , anti_IgX_Ab_vendor (Text) , anti_IgX_Ab_Catalog# (Text) , Detection_Ab (Text) , Detection_Ab_vendor (Text) , Detection_Ab_Catalog# (Text) , Analyzer (Text) , Analyzer_Vendor (Text) , Lab (Text) , Type (Text)
Not specified
An Fc-gamma receptor binding assay data file records binding measurements between antibodies and Fc-gamma receptors. It represents the output used to evaluate antibody effector function and receptor affinity. Typical file types: .csv, .xlsx
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Checksum_PrimaryData (Text) , Protocol (URI) , SampleCreationDate (Text) , Scientist (Text) , Parent (Text) , Bead_Vendor (Text) , Bead_Catalog# (Text) , Bead_coating (Text) , Fc_gamma_Receptor (Text) , Fc_gamma_Receptor_Vendor (Text) , Biotin (Text) , Biotin_Vendor (Text) , Biotin_Catalog# (Text) , Fluoro-Streptavidine (Text) , Fluoro-Streptavidine_Vendor (Text) , Fluoro-Streptavidine_Catalog# (Text) , Analyzer (Text) , Analyzer_Vendor (Text) , Lab (Text)
Not specified
An antibody dependent neutrophil phagocytosis data file records quantitative measurements of antibody-mediated uptake by neutrophils. It represents the processed output used to evaluate innate immune activation. Typical file types: .csv, .xlsx
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Checksum_PrimaryData (Text) , Protocol (URI) , SampleCreationDate (Text) , Scientist (Text) , Parent (Text) , Bead_Fluorescence (Text) , Bead_Vendor (Text) , Bead_Catalog# (Text) , Bead_coating (Text) , Leukocytes (Text) , Analyzer (Text) , Analyzer_Vendor (Text) , Fixed (Text) , Fixative (Text) , Lab (Text)
Not specified
An antibody dependent NK cell activation data file contains fluorescence or luminescence signals measuring natural killer cell activation through antibody engagement. It represents the output used to evaluate antibody-dependent cellular cytotoxicity. Typical file types: .csv, .xlsx
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Checksum_PrimaryData (Text) , Protocol (URI) , SampleCreationDate (Text) , Scientist (Text) , Parent (Text) , ELISAplate_Vendor (Text) , ELISAplate_Catalog# (Text) , Antigen (Text) , Blocking_solution (Text) , NKC_Name (Text) , AntiCD107a_Name (Text) , AntiCD107a_Ab_Vendor (Text) , AntiCD107a_Ab_Fluorophore (Text) , AntiCD107a_Ab_Catalog# (Text) , CD3_Name (Text) , CD3_Ab_Vendor (Text) , CD3_Ab_Fluorophore (Text) , CD3_Ab_Catalog# (Text) , CD56_Name (Text) , CD56_Ab_Vendor (Text) , CD56_Ab_Fluorophore (Text) , CD56_Ab_Catalog# (Text) , CD16_Name (Text) , CD16_Ab_Vendor (Text) , CD16_Ab_Fluorophore (Text) , CD16_Ab_Catalog# (Text) , MIP-1B_Name (Text) , MIP-1B_Ab_Vendor (Text) , MIP-1B_Ab_Fluorophore (Text) , MIP-1B_Ab_Catalog# (Text) , INFg_Name (Text) , INFg_Ab_Vendor (Text) , INFg_Ab_Fluorophore (Text) , INFg_Ab_Catalog# (Text) , Fixed (Text) , Fixative (Text) , Analyzer (Text) , Analyzer_Vendor (Text) , Lab (Text) , TNFa_Name (Text) , TNFa_Ab_Vendor (Text) , TNFa_Ab_Fluorophore (Text) , TNFa_Ab_Catalog# (Text)
Not specified
An antibody dependent cellular phagocytosis data file contains measurements of target cell uptake mediated by antibody opsonization. It represents the digital output used to assess immune cell function and antibody efficacy. Typical file types: .csv, .xlsx
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Checksum_PrimaryData (Text) , Protocol (URI) , SampleCreationDate (Text) , Scientist (Text) , Parent (Text) , Bead_Fluorophore (Text) , Bead_Vendor (Text) , Bead_Catalog# (Text) , Bead_Coating (Text) , PhagocyticCells (Text) , PhagocyticCells_Vendor (Text) , PhagocyticCells_Catalog# (Text) , Analyzer (Text) , Analyzer_Vendor (Text) , Fixed (Text) , Fixative (Text) , Lab (Text)
Not specified
A titer assay analysis file contains processed results from antibody or viral titer experiments. It represents calculated concentrations or endpoint dilutions used to quantify immune response or viral load. Each file typically summarizes data from serial dilution experiments (many→1). Typical file types: .csv, .xlsx
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Checksum_PrimaryData (Text) , Scientist (Text) , Parent (Text)
Not specified
An FCRB analysis file contains processed binding data from Fc receptor assays. It represents quantified receptor-ligand interactions used to evaluate antibody effector functions. Each file may summarize multiple binding measurements or conditions (many→1). Typical file types: .csv, .xlsx
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Checksum_PrimaryData (Text) , Parent (Text) , Scientist (Text)
Not specified
An ADNP analysis file contains processed data from antibody-dependent neutrophil phagocytosis assays. It represents fluorescence or imaging-based results used to quantify neutrophil uptake activity. Each file typically summarizes data from multiple replicates or conditions (many→1). Typical file types: .csv, .xlsx
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Checksum_PrimaryData (Text) , Scientist (Text) , Parent (Text)
Not specified
An ADNKA analysis file contains processed results from antibody-dependent natural killer cell activation assays. It represents quantified cytokine secretion or surface marker expression used to measure NK cell activity. Each file often summarizes multiple donor or replicate measurements (many→1). Typical file types: .csv, .xlsx
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Checksum_PrimaryData (Text) , Scientist (Text) , Parent (Text)
Not specified
An ADCP analysis file contains processed results from antibody-dependent cellular phagocytosis assays. It represents quantified phagocytic activity used to assess immune function or antibody efficacy. Each file often summarizes data from multiple replicates or cell populations (many→1). Typical file types: .csv, .xlsx
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Checksum_PrimaryData (Text) , Scientist (Text) , Parent (Text)
Not specified
A flow cytometry file stores fluorescence and light-scattering measurements collected from individual cells or particles during cytometric analysis. It represents the digital output of a cytometer used to characterize cell populations and properties. Typical file type: .fcs
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Scientist (Text) , SampleCreationDate (Text) , Parent (Registered Sample - TIS - Seshadri) , Protocol (Text) , Instrument (Text) , Fixation (Text) , Fixative (Text) , Stimulation (Text) , AntibodyParent (Registered Sample - ABP - Seshadri) , CompensationFCSParent (Text) , Repository (Text) , RepositoryID (Text)
Not specified
A patient sample represents a human participant enrolled in a study. It serves as the source for clinical information and biological material collected to investigate health, disease, or treatment effects.
UID (String) *, Name (String) , Scientist (String) , Age (String) , Sex (String) , DiseaseReference (String) , DiseaseStage (String) , Ethnicity (String) , Race (String) , SubjectLocation (String) , Notes (String)
Not specified
A patient visit record represents a specific encounter or collection event for a study participant. It provides temporal and contextual information linking biological samples or data files to a particular time point, condition, or intervention.
UID (String) *, Name (String) , Parent (Registered Sample - PAT - EI_Fc-Engineered) , Scientist (String) , Type (String) , Notes (String)
Not specified
A tissue sample represents a portion of biological material collected from an organism. It serves as the source for downstream molecular, cellular, or histological analyses.
UID (String) *, Name (String) , Scientist (String) , Parent (String) , Type (String) , Notes (String)
Not specified
An antibody sample contains purified immune proteins that specifically recognize and bind to target molecules. These samples are used in experimental procedures that detect, label, or isolate biological components. Each antibody is defined by its binding specificity, source, and production method.
UID (String) *, Name (String) , Catalog# (String) , Vendor (String) , Analyte (String) , Clone (String) , Fc-variant (String) , AminoAcidMutations (String) , Description (String) , Protocol (URI) , Scientist (String) , Notes (String)
Not specified
A bacteria sample represents a microbial strain used in an experiment, either as an infectious agent or as material isolated from another biological source. It serves as a basis for studying host interactions, gene expression, or microbial composition.
UID (String) *, Name (String) , Species (String) , Strain (String) , TaxonomyID (String) , Phenotype (String) , Morphology (String) , GramStaining (String) , Scientist (String) , Notes (String)
Not specified
A Luminex data file contains multiplexed fluorescence intensity measurements generated by bead-based assays. It represents the digital output used to quantify multiple proteins, cytokines, or analytes simultaneously. Typical file types: .csv, .xlsx, .xml
UID (String) *, Name (String) , File_PrimaryData (String) , Link_PrimaryData (URI) , Checksum_PrimaryData (String) , Checksum_PrimaryType (String) , Parent (Registered Sample - TIS - EI_Fc-Engineered) , Scientist (String) , SampleCreationDate (String) , Protocol (URI) , Panel (String) , Analyte (String) , Vendor (String) , Product# (String) , Lot# (String) , BeadFluorescence (String) , MeasurementWavelength (String) , MeasurementWavelengthUnits (String) , Instrument (String) , Software (String) , LuminexDesign (String) , Notes (String)
Not specified
A glycosylation assay data file records the presence or structure of carbohydrate modifications on proteins or lipids. It represents the analytical output used to study post-translational modifications or molecular stability. Typical file types: .csv, .xlsx, .raw
UID (String) *, Name (String) , File_PrimaryData (String) , Link_PrimaryData (URI) , Checksum_PrimaryData (String) , Checksum_PrimaryType (String) , Parent (String) , Scientist (String) , SampleCreationDate (String) , Protocol (URI) , Type (String) , Procedure (String) , PurificationKit (String) , PurificationKit_Vendor (String) , PurificationKit_Catalog# (String) , Filter (String) , Filter_Vendor (String) , Filter_Catalog# (String) , Analyte (String) , AnalyteVolume (String) , AnalyteVolumeUnits (String) , DigestiveEnzyme (String) , DigestiveEnzyme_Vendor (String) , DigestiveEnzyme_Catalog# (String) , DigestiveTemperature (String) , DigestiveTemperatureUnits (String) , DomainSelectionTarget (String) , DomainBeadSelector (String) , Bead_Vendor (String) , Bead_Catalog# (String) , SelectionTemperature (String) , SelectionTemperatureUnits (String) , IsolationTarget (String) , IsolationKit (String) , IsolationKit_Vendor (String) , IsolationKit_Catalog# (String) , CaptureKit (String) , CaptureKit_Vendor (String) , CaptureKit_Catalog# (String) , Label (String) , LabellingKit (String) , LabellingKit_Vendor (String) , LabellingKit_Catalog# (String) , AnalysisMethod (String) , Ladder (String) , Ladder_Vendor (String) , Ladder_Catalog# (String) , Analyzer (String) , AnalyzerSoftware (String)
Not specified
An ELISA assay data file contains absorbance or fluorescence readings from enzyme-linked immunosorbent assays. It represents the processed output used to quantify target proteins, antigens, or antibodies. Typical file types: .csv, .xlsx
UID (String) *, Name (String) , File_PrimaryData (String) , Link_PrimaryData (URI) , Checksum_PrimaryData (String) , Checksum_PrimaryType (String) , Parent (String) , Scientist (String) , SampleCreationDate (String) , Protocol (URI) , Type (String) , Analyte (String) , AnalyteVolume (String) , AnalyteVolumeUnits (String) , Analyte_Vendor (String) , Analyte_Catalog# (String) , AnalyteProcedure (String) , Plate (String) , Plate_Vendor (String) , Plate_Catalog# (String) , PlateWash (String) , PlateBlocker (String) , PlateBlockerProcedure (String) , NegativeControl (String) , NegativeControl_Vendor (String) , NegativeControl_Catalog# (String) , Detector (String) , Detector_Vendor (String) , Detector_Catalog# (String) , ReactionStopper (String) , Instrument (String) , Absorbance (String) , AbsorbanceUnits (String)
Not specified
A bacterial survivability restriction assay data file contains measurements of bacterial viability under defined conditions. It represents the processed output used to assess antimicrobial resistance or stress responses. Typical file types: .csv, .xlsx
UID (String) *, Name (String) , File_PrimaryData (String) , Link_PrimaryData (URI) , Checksum_PrimaryData (String) , Checksum_PrimaryType (String) , Parent (String) , Scientist (String) , SampleCreationDate (String) , Protocol (URI) , Type (String) , LightEmission_Plasmid (String) , LightEmission_Reporter (String) , BacterialStrain (String) , MultiplicityOfInfection (String) , InfectedCells (String) , Cells_Vendor (String) , Cells_Catalog# (String) , NumberInfectedCells (String) , ExcitationWavelength (String) , EmissionWavelength (String) , ReadingIntervals (String) , Analyzer (String) , Analyzer_Vendor (String) , Dilution (String)
Not specified
An antibody dependent neutrophil phagocytosis data file records quantitative measurements of antibody-mediated uptake by neutrophils. It represents the processed output used to evaluate innate immune activation. Typical file types: .csv, .xlsx
UID (String) *, Name (String) , File_PrimaryData (String) , Link_PrimaryData (URI) , Checksum_PrimaryData (String) , Checksum_PrimaryType (String) , Parent (String) , Scientist (String) , SampleCreationDate (String) , Protocol (URI) , Bead_Fluorophore (String) , Bead_Vendor (String) , Bead_Catalog# (String) , Bead_coating (String) , Leukocytes (String) , Analyzer (String) , Analyzer_Vendor (String) , Fixed (String) , Fixative (String) , Staining_Antibody (String) , Staining_Antibody_Vendor (String) , Staining_Antibody_Fluorophore (String)
Not specified
An antibody dependent NK cell activation data file contains fluorescence or luminescence signals measuring natural killer cell activation through antibody engagement. It represents the output used to evaluate antibody-dependent cellular cytotoxicity. Typical file types: .csv, .xlsx
UID (String) *, Name (String) , File_PrimaryData (String) , Link_PrimaryData (URI) , Checksum_PrimaryData (String) , Checksum_PrimaryType (String) , Parent (String) , Scientist (String) , SampleCreationDate (String) , Protocol (URI) , ELISAplate (String) , ELISAplate_Vendor (String) , ELISAplate_Catalog# (String) , Antigen (String) , Blocking_solution (String) , NKC_Name (String) , AntiCD107a_Name (String) , AntiCD107a_Ab_Vendor (String) , AntiCD107a_Ab_Fluorophore (String) , AntiCD107a_Ab_Catalog# (String) , CD3_Name (String) , CD3_Ab_Vendor (String) , CD3_Ab_Fluorophore (String) , CD3_Ab_Catalog# (String) , CD56_Name (String) , CD56_Ab_Vendor (String) , CD56_Ab_Fluorophore (String) , CD56_Ab_Catalog# (String) , CD16_Name (String) , CD16_Ab_Vendor (String) , CD16_Ab_Fluorophore (String) , CD16_Ab_Catalog# (String) , MIP-1B_Name (String) , MIP-1B_Ab_Vendor (String) , MIP-1B_Ab_Fluorophore (String) , MIP-1B_Ab_Catalog# (String) , INFg_Name (String) , INFg_Ab_Vendor (String) , INFg_Ab_Fluorophore (String) , INFg_Ab_Catalog# (String) , Fixed (String) , Fixative (String) , Analyzer (String) , Analyzer_Vendor (String) , Software (String) , TNFa_Name (String) , TNFa_Ab_Vendor (String) , TNFa_Ab_Fluorophore (String) , TNFa_Ab_Catalog# (String)
Not specified
An antibody dependent cellular phagocytosis data file contains measurements of target cell uptake mediated by antibody opsonization. It represents the digital output used to assess immune cell function and antibody efficacy. Typical file types: .csv, .xlsx
UID (String) *, Name (String) , File_PrimaryData (String) , Link_PrimaryData (URI) , Checksum_PrimaryData (String) , Checksum_PrimaryType (String) , Parent (String) , Scientist (String) , SampleCreationDate (String) , Protocol (URI) , Bead_Fluorophore (String) , Bead_Vendor (String) , Bead_Catalog# (String) , Bead_Coating (String) , PhagocyticCells (String) , PhagocyticCells_Vendor (String) , PhagocyticCells_Catalog# (String) , Analyzer (String) , Analyzer_Vendor (String) , Fixed (String) , Fixative (String) , Software (String)
Not specified
An antibody dependent complement deposition data file records complement activation measured in response to antibody binding. It represents the digital output used to quantify immune complex formation and complement pathway activity. Typical file types: .csv, .xlsx
UID (String) *, Name (String) , File_PrimaryData (String) , Link_PrimaryData (URI) , Checksum_PrimaryData (String) , Checksum_PrimaryType (String) , Parent (String) , Scientist (String) , SampleCreationDate (String) , Protocol (URI) , Bead_Fluorophore (String) , Bead_Vendor (String) , Bead_Catalog# (String) , Bead_coating (String) , Complement (String) , Complement_Vendor (String) , Complement_Catalog# (String) , CD3Ab_Name (String) , C3Ab_Vendor (String) , C3Ab_Catalog# (String) , C3Ab_Fluorophore (String) , Analyzer (String) , Analyzer_Vendor (String)
Not specified
A single cell clustering analysis file contains processed results grouping cells based on shared expression profiles. It represents the interpreted output used to define cellular subpopulations and visualize transcriptomic structure. Each file summarizes results derived from many single-cell inputs (many→1). Typical file types: .csv, .rds, .h5ad
UID (String) *, Name (String) , File_PrimaryData (String) , Link_PrimaryData (URI) , DataType (String) , Protocol (URI) , Parent (String) , Scientist (String) , Lab (String) , Checksum_PrimaryData (String) , Software (String) , Checksum_PrimaryType (String)
Not specified
A chemical sample represents a defined compound or reagent used in an experiment. It may serve as a reactant, control, or treatment substance within an experimental workflow.
UID (String) *, Name (String) , Scientist (String) , Formula (String) , Lab (String) , Form (String) , Manufacturer (String) , ProductNumber (String) , CASNumber (String) , MDLNumber (String) , StorageTempMin (String) , StorageTempMax (String) , StorageTempUnits (String)
Not specified
A DNA sample contains extracted genetic material isolated from a biological source. It serves as input for sequencing, amplification, or other genomic analyses.
UID (String) *, Name (String) , Protocol (URI) , Scientist (String) , Parent (Registered Sample - TIS - EI_Fc-Engineered) , Type (String) , LibraryType (String) , Barcode (String) , BarcodeType (String) , Barcode2 (String) , Barcode2Type (String) , NumPrepCycles (String) , Notes (String) , Lab (String)
Not specified
A single cell expression matrix file contains processed gene expression counts for individual cells. It represents the normalized matrix used for downstream dimensionality reduction, clustering, or differential expression analysis. Each file integrates thousands of single-cell measurements into one dataset (many→1). Typical file types: .h5ad, .mtx, .csv
UID (String) *, Name (String) , File_PrimaryData (String) , Link_PrimaryData (URI) , Scientist (String) , DataType (String) , LibraryPrep (String) , Barcodes (String) , BarcodesDataType (String) , Genes (String) , GenesDataType (String) , Metadata (String) , MetadataDataType (String) , ReferenceGenome (String) , ReferenceGenomeSource (String) , Pipeline (String) , Protocol (URI) , Parent (String) , Lab (String) , Repository (String) , Accession (String) , Checksum_PrimaryData (String) , Checksum_Barcodes (String) , Checksum_Genes (String) , Checksum_Metadata (String) , Checksum_PrimaryType (String)
Not specified
A non-human primate sample originates from an organism closely related to humans within the primate order. These samples are collected to study biological processes that share genetic and physiological similarities with human systems. Each reflects controlled collection and handling specific to the species and study design.
UID (Text) *, Name (Text) , DateOfBirth (Text) , Sex (Text) , Species (Text) , Origin (Text) , Facility (Text) , Notes (Text) , Scientist (Text) , Cohort (Text) , Supplier (Text) , Protocol (URI) , Study (Text) , Funder (Text) , TotalCFU (Text) , LungCFU (Text) , LymphNodeCFU (Text) , StudyDesign (Text) , Link_StudyDesign (URI) , NewGranulomaCount (Text)
Not specified
A patient visit record represents a specific encounter or collection event for a study participant. It provides temporal and contextual information linking biological samples or data files to a particular time point, condition, or intervention.
UID (Text) *, Name (Text) , Scientist (Text) , Protocol (URI) , Type (Text) , Procedure (Text) , Parent (Text) , VisitFacility (Text) , Notes (Text) , SampleCreationDate (Text) , Treatment1 (Text) , Treatment1Type (Text) , Treatment1Route (Text) , Treatment1Dose (Text) , Treatment1DoseUnits (Text) , Treatment2 (Text) , Treatment2Type (Text) , Treatment2Route (Text) , Treatment2Dose (Text) , Treatment2DoseUnits (Text) , Treatment3 (Text) , Treatment3Type (Text) , Treatment3Route (Text) , Treatment3Dose (Text) , Treatment3DoseUnits (Text) , Treatment4 (Text) , Treatment4Type (Text) , Treatment4Route (Text) , Treatment4Dose (Text) , Treatment4DoseUnits (Text) , ExperimentalTimepoint (Text) , Treatment1Parent (Text) , Treatment2Parent (Text)
Not specified
A bacteria sample represents a microbial strain used in an experiment, either as an infectious agent or as material isolated from another biological source. It serves as a basis for studying host interactions, gene expression, or microbial composition.
UID (Text) *, Name (Text) , Scientist (Text) , Species (Text) , Morphology (Text) , Strain (Text) , TaxonomyID (Text) , GramStaining (Text) , Barcode (Text) , Qtag (Text)
Not specified
An antibody sample contains purified immune proteins that specifically recognize and bind to target molecules. These samples are used in experimental procedures that detect, label, or isolate biological components. Each antibody is defined by its binding specificity, source, and production method.
UID (Text) *, Name (Text) , catalog# (Text) , Vendor (Text) , Analyte (Text) , Clone (Text) , RRID (Text) , CatalogLink (URI)
Not specified
A tissue sample represents a portion of biological material collected from an organism. It serves as the source for downstream molecular, cellular, or histological analyses.
UID (Text) *, Name (Text) , Scientist (Text) , SampleCreationDate (Text) , NXProtocol (URI) , GentleMacsProtocol (URI) , CFUProtocol (URI) , Parent (Text) , Type (Text) , Organ (Text) , OrganDetail (Text) , CFU (Text) , CFUUnits (Text) , ArrayNumber (Text) , ExtractionInterval (Text)
Not specified
An imaging data file stores visual or spatial information captured from microscopy, radiography, or other imaging systems. It represents the raw or processed image output used for structural or morphological analysis. Typical file types: .tiff, .jpg, .png, .ome.tiff
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Scientist (Text) , Protocol (URI) , SampleCreationDate (Text) , Parent (Text) , Type (Text) , Notes (Text) , Instrument (Text) , DataType (Text) , TotalLungFDGActivity (Text) , TotalLungFDGActivityUnits (Text)
Not specified
A bacteria sample represents a microbial strain used in an experiment, either as an infectious agent or as material isolated from another biological source. It serves as a basis for studying host interactions, gene expression, or microbial composition.
UID (Text) *, Name (Text) , Scientist (Text) , SampleCreationDate (Text) , Protocol (URI) , Parent (Text) , Notes (Text) , Lab (Text)
Not specified
A single cell expression matrix file contains processed gene expression counts for individual cells. It represents the normalized matrix used for downstream dimensionality reduction, clustering, or differential expression analysis. Each file integrates thousands of single-cell measurements into one dataset (many→1). Typical file types: .h5ad, .mtx, .csv
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , SampleCreationDate (Text) , Scientist (Text) , DataType (Text) , Protocol (URI) , Parent (Text) , Lab (Text) , Repository (Text) , RepositoryID (Text) , ReferenceGenome_Link (URI) , DemultiplexingTool (Text) , ReferenceGenome (Text)
Not specified
A digitally barcoded MTB matrix analysis file contains processed results from barcoded Mycobacterium tuberculosis tracking experiments. It represents summarized abundance or distribution data across bacterial lineages or host conditions. Each file aggregates results from multiple barcoded samples into one matrix (many→1). Typical file types: .csv, .xlsx
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , DataType (Text) , Parent (Text) , Lab (Text) , Scientist (Text) , Checksum_PrimaryData (Text) , BacterialParent (Text) , Checksum_PrimaryType (Text)
Not specified
An antibody sample contains purified immune proteins that specifically recognize and bind to target molecules. These samples are used in experimental procedures that detect, label, or isolate biological components. Each antibody is defined by its binding specificity, source, and production method.
UID (Text) *, Name (Text) , Vendor (Text) , Analyte (Text) , Clone (Text) , Fluorophore (Text) , ExperimentType (Text) , Isotype (Text) , CatalogLink (URI)
Not specified
An antibody panel sample represents a curated collection of antibodies used for detection or labeling in assays. It defines the set of reagents applied to measure or visualize specific proteins, cells, or molecular targets. This sample type is used to link AB's together into a single UID
UID (Text) *, Name (Text) , Parent (Text) , Scientist (Text)
Not specified
A flow cytometry file stores fluorescence and light-scattering measurements collected from individual cells or particles during cytometric analysis. It represents the digital output of a cytometer used to characterize cell populations and properties. Typical file type: .fcs
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Protocol (URI) , Scientist (Text) , SampleCreationDate (Text) , Parent (Text) , Instrument (Text) , Checksum_PrimaryData (Text) , Software (Text) , Fixation (Text) , Stimulation (Text) , AntibodyParent (Text) , Type (Text) , Repository (Text) , RepositoryID (Text) , Checksum_PrimaryType (Text)
Not specified
A flow cytometry analysis file contains processed results derived from raw cytometry data. It represents quantified cell populations, marker expression levels, or gating outcomes used for downstream statistical interpretation. Each file typically aggregates data from multiple raw samples into one analyzed dataset (many→1). Typical file types: .csv, .xlsx, .fcs
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Checksum_PrimaryData (Text) , Scientist (Text) , Parent (Text)
Not specified
A non-human primate sample originates from an organism closely related to humans within the primate order. These samples are collected to study biological processes that share genetic and physiological similarities with human systems. Each reflects controlled collection and handling specific to the species and study design.
UID (Text) *, Name (Text) , DateOfBirth (Text) , Sex (Text) , Species (Text) , Origin (Text) , Facility (Text) , Notes (Text) , Scientist (Text) , Cohort (Text) , Supplier (Text) , Protocol (URI) , Study (Text) , Funder (Text) , TotalCFU (Text) , LungCFU (Text) , LymphNodeCFU (Text) , TotalPathologyScore (Text) , LungPathologyScore (Text) , LymphNodePathologyScore (Text) , CFUUnits (Text) , StudyDesign (Text)
Not specified
A patient visit record represents a specific encounter or collection event for a study participant. It provides temporal and contextual information linking biological samples or data files to a particular time point, condition, or intervention.
UID (Text) *, Name (Text) , Scientist (Text) , Type (Text) , Procedure (Text) , Parent (Text) , Protocol (URI) , Notes (Text) , SampleCreationDate (Text) , Treatment1 (Text) , Treatment1Type (Text) , Treatment1Route (Text) , Treatment1Dose (Text) , Treatment1DoseUnits (Text) , Treatment2 (Text) , Treatment2Type (Text) , Treatment2Route (Text) , Treatment2Dose (Text) , Treatment2DoseUnits (Text) , Treatment3 (Text) , Treatment3Type (Text) , Treatment3Route (Text) , Treatment3Dose (Text) , Treatment3DoseUnits (Text)
Not specified
A tissue sample represents a portion of biological material collected from an organism. It serves as the source for downstream molecular, cellular, or histological analyses.
UID (Text) *, Name (Text) , Scientist (Text) , SampleCreationDate (Text) , Protocol (URI) , Parent (Text) , Type (Text) , Organ (Text) , OrganDetail (Text) , ExtractionInterval (Text) , CFU (Text) , CFUUnits (Text)
Not specified
An imaging data file stores visual or spatial information captured from microscopy, radiography, or other imaging systems. It represents the raw or processed image output used for structural or morphological analysis. Typical file types: .tiff, .jpg, .png, .ome.tiff
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Scientist (Text) , Protocol (URI) , SampleCreationDate (Text) , Parent (Text) , Type (Text) , Notes (Text) , Instrument (Text) , DataType (Text) , TotalLungFDGActivity (Text) , TotalLungFDGActivityUnits (Text)
Not specified
A titer assay data file contains quantitative measurements of antibody or viral concentrations from serial dilution experiments. It represents the processed output used to assess immune response or viral load. Typical file types: .csv, .xlsx
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Protocol (URI) , Scientist (Text) , Parent (Text) , Bead_Vendor (Text) , Bead_coating (Text) , anti_IgX_Ab (Text) , anti_IgX_Ab_vendor (Text) , Detection_Ab (Text) , Detection_Ab_vendor (Text) , Analyzer (Text) , Analyzer_Vendor (Text) , Lab (Text) , Checksum_PrimaryData (Text) , Type (Text) , Dilution (Text) , Checksum_PrimaryType (Text)
Not specified
A flow cytometry file stores fluorescence and light-scattering measurements collected from individual cells or particles during cytometric analysis. It represents the digital output of a cytometer used to characterize cell populations and properties. Typical file type: .fcs
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Path_PrimaryData (Text) , Scientist (Text) , SampleCreationDate (Text) , Parent (Text) , Protocol (URI) , Instrument (Text) , Checksum_PrimaryData (Text) , Software (Text) , Fixation (Text) , Fixative (Text) , Stimulation (Text) , AntibodyParent (Text) , Type (Text) , Repository (Text) , RepositoryID (Text) , Checksum_PrimaryType (Text)
Not specified
A titer assay analysis file contains processed results from antibody or viral titer experiments. It represents calculated concentrations or endpoint dilutions used to quantify immune response or viral load. Each file typically summarizes data from serial dilution experiments (many→1). Typical file types: .csv, .xlsx
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Checksum_PrimaryData (Text) , Scientist (Text) , Parent (Text) , Checksum_PrimaryType (Text)
Not specified
An antibody sample contains purified immune proteins that specifically recognize and bind to target molecules. These samples are used in experimental procedures that detect, label, or isolate biological components. Each antibody is defined by its binding specificity, source, and production method.
UID (Text) *, Name (Text) , Vendor (Text) , Analyte (Text) , Clone (Text) , RRID (Text) , Fluorophore (Text) , ExperimentType (Text) , Isotype (Text) , CatalogLink (URI)
Not specified
An antibody panel sample represents a curated collection of antibodies used for detection or labeling in assays. It defines the set of reagents applied to measure or visualize specific proteins, cells, or molecular targets. This sample type is used to link AB's together into a single UID
UID (Text) *, Name (Text) , Parent (Text) , Scientist (Text) , DateRange (Text) , LinkCohortFile (URI)
Not specified
A flow cytometry analysis file contains processed results derived from raw cytometry data. It represents quantified cell populations, marker expression levels, or gating outcomes used for downstream statistical interpretation. Each file typically aggregates data from multiple raw samples into one analyzed dataset (many→1). Typical file types: .csv, .xlsx, .fcs
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Parent (Text) , Protocol (URI) , Software (Text) , Scientist (Text)
Not specified
An imaging data file stores visual or spatial information captured from microscopy, radiography, or other imaging systems. It represents the raw or processed image output used for structural or morphological analysis. Typical file types: .tiff, .jpg, .png, .ome.tiff
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (Text) , Scientist (Text) , Protocol (URI) , SampleCreationDate (Text) , Parent (Text) , Type (Text) , Notes (Text) , Instrument (Text) , DataType (Text) , Checksum_PrimaryData (Text) , Checksum_PrimaryType (Text)
Not specified
An MDL file represents a model definition or machine learning output used for predictive analysis. It contains parameters, trained weights, or configuration metadata describing a computational model. Each file typically summarizes results from training on multiple datasets (many→1). Typical file types: .mdl, .json, .h5
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Scientist (Text) , Type (Text) , TrainingDatasets (URI) , ValidationDatasets (Text) , Protocol (URI)
Not specified
UID (Text) *, Name (Text) , Scientist (Text) , Formula (Text) , Lab (Text) , Publish_uri (URI)
Not specified
UID (Text) *, Name (Text) , Scientist (Text) , StorageType (Text) , StorageLocation (Text) , StorageSite (Text) , Notes (Text) , Protocol (URI) , SampleCreationDate (Text) , Parent (Text) , Type (Text) , Organ (Text) , OrganDetail (Text) , SampleCollectionDate (Text)
Not specified
UID (Text) *, Name (Text) , Scientist (Text) , Protocol (URI) , Parent (Text) , Stain (Text)
Not specified
UID (Text) *, Name (Text) , Scientist (Text) , StorageType (Text) , Protocol (URI) , SampleCreationDate (Text) , Parent (Text) , Type (Text) , Concentration (Text) , Lab (Text) , ConcUnits (Text) , RIN (Text) , QC_Instrument (Text) , ExtractionMethod (Text)
Not specified
UID (Text) *, Name (Text) , Scientist (Text) , DateOfBirth (Text) , Sex (Text) , Genotype (Text) , Notes (Text) , Cohort (Text) , SacrificeDate (Text) , Treatment1Type (Text) , Treatment1 (Text) , Treatment1Date (Text) , Treatment1Parent (Text) , Treatment1Route (Text) , Treatment1Dose (Text) , Treatment1DoseUnits (Text) , Treatment2Type (Text) , Treatment2 (Text) , Treatment2Date (Text) , Treatment2Parent (Text) , Treatment2Route (Text) , Treatment2Dose (Text) , Treatment2DoseUnits (Text) , Treatment3Type (Text) , Treatment3 (Text) , Treatment3Date (Text) , Treatment3Dose (Text) , Treatment3DoseUnits (Text) , AlternativeIDs (Text) , Protocol (URI)
Not specified
UID (Text) *, Name (Text) , Scientist (Text) , Protocol (URI) , Parent (Text) , Type (Text) , Lab (Text) , QC_Instrument (Text)
Not specified
UID (Text) *, Scientist (Text) , Protocol (URI) , Parent (Text) , File_PrimaryData (Text) , Link_PrimaryData (URI) , Checksum_PrimaryData (Text) , PrimaryAntibody (Text) , DetectionMethod (Text) , Checksum_PrimaryType (Text) , File_SecondaryData (Text) , Checksum_SecondaryData (Text) , Checksum_SecondaryType (Text)
Not specified
UID (Text) *, Scientist (Text) , Protocol (URI) , Parent (Text) , Type (Text) , File_PrimaryData (Text) , Link_PrimaryData (URI) , Checksum_PrimaryData (Text) , Checksum_PrimaryType (Text) , Instrument (Text) , Mode (Text) , Path_PrimaryData (Text) , Ionization (Text)
Not specified
UID (Text) *, Scientist (Text) , Protocol (URI) , Parent (Text) , File_PrimaryData (Text) , Link_PrimaryData (URI) , Checksum_PrimaryData (Text) , Checksum_PrimaryType (Text) , DataType (Text) , Repository (Text) , Sequencer (Text) , LibraryStrategy (Text) , LibrarySource (Text) , LibrarySelection (Text) , ExtractedMolecule (Text) , Genome (Text) , LibraryDesign (Text) , Accession (Text) , Link_SRA (URI) , SequencingFacility (Text) , SequencingFacilityLocation (Text)
Not specified
UID (Text) *, Scientist (Text) , Protocol (URI) , Parent (Text) , File_PrimaryData (Text) , Link_PrimaryData (URI) , Checksum_PrimaryData (Text) , Checksum_PrimaryType (Text) , Instrument (Text) , Path_PrimaryData (Text) , Software (Text) , SlideStain (Text) , DataType (Text) , Channels (Text) , ObjectiveLens (Text) , DetectorName (Text) , FluorescentLabels (Text) , Magnification (Text)
Not specified
UID (Text) *, Scientist (Text) , Protocol (URI) , Parent (Text) , Lab (Text) , File_PrimaryData (Text) , Link_PrimaryData (URI) , Checksum_PrimaryData (Text) , Checksum_PrimaryType (Text)
Not specified
UID (Text) *, Name (Text) , Scientist (Text) , StorageLocation (Text) , Protocol (URI) , SampleCreationDate (Text) , Parent (Text) , Type (Text) , Organ (Text) , OrganDetail (Text) , Volume (Text) , VolumeUnits (Text) , Note (Text)
Not specified
UID (Text) *, Scientist (Text) , Notes (Text) , Parent (Text) , Lab (Text) , File_PrimaryData (Text) , Link_PrimaryData (URI) , Checksum_PrimaryData (Text) , Checksum_PrimaryType (Text) , ModelName (Text)
Not specified
UID (Text) *, Scientist (Text) , Protocol (URI) , Parent (Text) , File_PrimaryData (Text) , Link_PrimaryData (URI) , Checksum_PrimaryData (Text) , Checksum_PrimaryType (Text)
Not specified
UID (Text) *, Scientist (Text) , Protocol (URI) , Parent (Text) , Lab (Text) , File_PrimaryData (Text) , Link_PrimaryData (URI) , Checksum_PrimaryData (Text) , Checksum_PrimaryType (Text) , Software (Text) , ModelType (Text) , SourceCode (Text) , DataType (Text) , Algorithm (Text)
Not specified
UID (Text) *, Scientist (Text) , Protocol (URI) , Parent (Text) , Lab (Text) , File_PrimaryData (Text) , Link_PrimaryData (URI) , Checksum_PrimaryData (Text) , Checksum_PrimaryType (Text) , Software (Text) , DataType (Text) , Repository (Text) , Accession (Text) , Pipeline (Text) , ReferenceGenome (Text)
Not specified
generic sample type "rat" with attribute for strain.
Lab ID (String) *, Strain (String) , Age (String) ( wk ) , PyRat ID (String) , DOB (Date) , surgery datetime (Date time) , weight PreOP (String) ( g ) , MRI datetime (Date time) , Weight PreMRI (String) ( g ) , BrdU Injection datetime (Date time) , time of death (Date time)
Not specified
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Scientist (Text) , Parent (Text) , Notes (Text) , Protocol (Text) , Repository (Text) , RepositoryLink (Text)
Not specified
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Scientist (Text) , Type (Text) , Parent (Text) , SourceDataFile (Text) , Repository (Text) , RepositoryLink (Text)
Not specified
UID (Text) *, File_PrimaryData (Text) , Scientist (Text) , Type (Text) , Notes (Text) , Parent (Text) , FluorescentLabels (Text) , ScanMode (Text) , Targets (Text)
Not specified
UID (Text) *, Name (Text) , Protocol (URI) , Species (Text) , Scientist (Text) , Type (Text) , Source (Text) , Parent (Text) , TreatmentType (Text) , Treatment1 (Text) , Treatment1Reference (Text) , Treatment1Dose (Text) , Treatment1DoseUnits (Text)
Not specified
UID (Text) *, Name (Text) , File_PrimaryData (Text) , Scientist (Text) , SampleCreationDate (Text) , Protocol (URI) , Link_PrimaryData (URI) , Parent (Text) , DataType (Text) , SequencingType (Text) , Sequencer (Text) , F_bp (Text) , R_bp (Text) , NumReads (Text) , LibraryStrategy (Text) , LibrarySource (Text) , LibrarySelection (Text) , ExtractedMolecule (Text) , Checksum_PrimaryData (Text) , File_SecondaryData (Text) , Link_SecondaryData (URI) , LibraryDesign (Text) , Accession (Text) , Repository (Text) , Checksum_PrimaryType (Text)
Not specified
UID (Text) *, Name (Text) , File_PrimaryData (Text) , Scientist (Text) , SampleCreationDate (Text) , Protocol (URI) , Parent (Text) , Link_PrimaryData (URI) , DataType (Text) , SequencingType (Text) , Sequencer (Text) , F_bp (Text) , R_bp (Text) , LibraryStrategy (Text) , LibrarySource (Text) , LibrarySelection (Text) , ExtractedMolecule (Text) , Checksum_PrimaryData (Text) , File_SecondaryData (Text) , Link_SecondaryData (URI) , Checksum_SecondaryData (Text) , LibraryDesign (Text) , Checksum_PrimaryType (Text)
Not specified
UID (Text) *, Name (Text) , Protocol (URI) , SampleCreationDate (Text) , Scientist (Text) , Parent (Text) , Type (Text) , BarcodeType (Text) , Barcode2Type (Text) , NumPrepCycles (Text) , Lab (Text)
Not specified
UID (Text) *, Name (Text) , Protocol (URI) , SampleCreationDate (Text) , Scientist (Text) , Parent (Text) , Type (Text) , Barcode (Text) , BarcodeType (Text) , Lab (Text)
Not specified
This Sample type is the AB for the "T cell signatures of bacterial control among M. tuberculosis 'resisters'" Study.
UID (Text) *, Name (Text) , Catalog# (Text) , Vendor (Text) , Analyte (Text) , Clone (Text) , Fluorophore (Text) , Scientist (Text) , ExperimentType (Text) , CatalogLink (URI)
Not specified
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Parent (Text) , Type (Text) , Scientist (DOI) , Checksum_PrimaryData (Text) , Checksum_PrimaryType (Text) , Protocol (URI)
Not specified
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Parent (Text) , Scientist (Text) , Type (Text) , Checksum_PrimaryData (Text) , Checksum_PrimaryType (Text) , Protocol (URI)
Not specified
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Scientist (Text) , Parent (Text) , Type (Text) , Notes (Text) , DataType (Text) , Checksum_PrimaryData (Text) , Checksum_PrimaryType (Text) , Protocol (URI)
Not specified
UID (Text) *, Name (Text) , File_PrimaryData (Text) , Link_PrimaryData (URI) , Type (Text) , Parent (Registered Sample - CHM - CW_NDMA) , Instrument (Text) , Scientist (Text) , Notes (Text) , Checksum_PrimaryData (Text) , Checksum_PrimaryType (Text) , Protocol (URI)
Not specified
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Parent (Text) , Scientist (Text) , Type (Text) , Solvent (Text) , Instrument (Text) , Checksum_PrimaryData (Text) , Notes (Text) , Checksum_PrimaryType (Text) , MeasurementType (Text) , MeasurementWavelength (Text) , MeasurementWavelengthUnits (Text) , Name (Text) , Protocol (URI)
Not specified
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Parent (Registered Sample - CHM - CW_NDMA) , RadiationSource (Text) , Type (Text) , Scientist (Text) , Instrument (Text) , Notes (Text) , Checksum_PrimaryType (Text) , Checksum_PrimaryData (Text) , Protocol (URI)
Not specified
UID (Text) *, Name (Text) , IUPAC Name (Text) , Scientist (Text) , Formula (Text) , Lab (Text) , Reference (Text) , Protocol (URI)
Not specified
D.FCS for the study: T cell signatures of bacterial control among M. tuberculosis 'resisters'
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Parent (Registered Sample - ABP - Seshadri) , Scientist (Text) , Repository (Text) , RepositoryID (Text) , SampleCreationDate (Text)
Not specified
This Sample Type is associated with the TIS samples from the "T cell signatures of bacterial control among M. tuberculosis 'resisters'" Study
UID (Text) *, Name (Text) , Scientist (Text) , SampleCreationDate (Text) , Protocol (Text) , Parent (Registered Sample - PAV - Seshadri) , Type (Text) , OrganDetail (Text) , StorageSite (Text) , StorageLocation (Text) , CellCount (Text)
Not specified
This is for patient visits for the study: T cell signatures of bacterial control among M. tuberculosis 'resisters'
UID (Text) *, Name (Text) , Scientist (Text) , Procedure (Text) , Type (Text) , Parent (Registered Sample - PAT - Seshadri) , VisitFacility (Text) , VisitLocation (Text)
Not specified
ABP sample type for the "T cell signatures of bacterial control among M. tuberculosis 'resisters'" Study
UID (Text) *, Name (Text) , Parent (Text) , Scientist (Text)
Not specified
This Sample Type is designed specifically for Seshardi Lab Study: T cell signatures of bacterial control among M. tuberculosis 'resisters'
UID (Text) *, Name (Text) , ID (Text) , Age (Text) , Sex (Text) , StatusHIV (Text) , Contact (Text) , SubjectLocation (Text) , Scientist (Text) , Height (Text) , HeightUnits (Text) , Weight (Text) , WeightUnits (Text) , Study (Text) , BaselineCohort (Text)
Not specified
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Parent (Text) , Scientist (Text) , DataType (Text) , Protocol (URI)
Not specified
UID (Text) *, Name (Text) , Parent (Text) , Type (Text) , Scientist (Text) , Protocol (URI) , Material (Text) , Media (Text)
Not specified
UID (Text) *, Name (Text) , Scientist (Text) , Type (Text) , StorageLocation (Text) , StorageSite (Text) , Protocol (URI) , Species (Text) , CellLine (Text) , Source (Text) , Media (Text) , Parent (Text)
Not specified
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Type (Text) , Scientist (Text) , Protocol_Analysis (URI) , Protocol_Model (URI) , Parent (Text) , Model_Type (Text)
Not specified
UID (Text) *, File_PrimaryData (Text) , Parent (Text) , Link_PrimaryData (URI) , Scientist (Text) , DataType (Text) , Protocol (URI) , Link_Code (URI)
Not specified
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Protocol (URI) , Type (Text) , DispersePhase (Text) , ContinuousPhase (Text) , Parent (Text) , Scientist (Text) , Instrument (Text) , Notes (Text) , Checksum_PrimaryData (Text) , Syringe (Text) , Needle (Text) , FluorometerCell (Text) , MeasurementInterval (Text) , MeasurementDuration (Text)
Not specified
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Protocol (URI) , Type (Text) , Mode (Text) , Crystal (Text) , Parent (Text) , Scientist (Text) , Instrument (Text) , Checksum_PrimaryData (Text)
Not specified
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Protocol (URI) , Solvent (Text) , Parent (Text) , Scientist (Text) , Instrument (Text) , Notes (Text) , Checksum_PrimaryData (Text) , Standard (Text)
Not specified
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Checksum_PrimaryData (Text) , Parent (Text) , Scientist (Text) , Standard (Text)
Not specified
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Protocol (URI) , Solvent (Text) , Type (Text) , Parent (Text) , Scientist (Text) , Instrument (Text) , Frequency (Text) , Frequency Units (Text) , Checksum_PrimaryData (Text)
Not specified
UID (Text) *, File_PrimaryData (Text) , Checksum_PrimaryData (Text) , Link_PrimaryData (URI) , Parent (Text) , Scientist (Text) , DataType (Text) , SampleCreationDate (Text) , Protocol (URI) , ImageTimepoint (Text)
Not specified
UID (Text) *, Name (Text) , Vendor (Text) , Parent (Text) , CASnumber (Text) , Scientist (Text) , Protocol (URI) , Formula (Text) , Type (Text) , Lab (Text) , Catalog# (Text) , Reference (Text)
Not specified
UID (Text) *, Name (Text) , Parent (Text) , Stimulation (Text) , Type (Text) , Scientist (Text) , Protocol (URI) , Material (Text) , Link_Design (URI)
Not specified
UID (Text) *, Name (Text) , Scientist (Text) , Type (Text) , StorageLocation (Text) , Parent (Text) , Protocol (URI) , Species (Text) , CellLine (Text) , Source (Text) , Media (Text)
Not specified
UID (String) *, Name (String) , Checksum_PrimaryData (String) , Checksum_PrimaryType (String) , Link_PrimaryData (String) , SampleCreationDate (String) , Scientist (String) , Parent (String) , Protocol (String) , Notes (String)
Not specified
UID (Text) *, Name (Text) , File_PrimaryData (Text) , Link_PrimaryData (URI) , Scientist (Text) , Checksum_PrimaryType (Text) , Checksum_PrimaryData (Text) , Parent (Text) , Protocol (URI) , Notes (Text)
Not specified
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Protocol (URI) , Parent (Text) , QuantificationMethod (Text) , Scientist (Text) , Software (Text)
Not specified
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Scientist (Text) , Protocol (URI) , Parent (Text) , Type (Text) , SlideStain (Text) , SlideStain2 (Text) , SlideAntibodyParent (Text) , Instrument (Text) , DataType (Text) , Checksum_PrimaryData (Text) , Checksum_PrimaryType (Text)
Not specified
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Scientist (Text) , Protocol (URI) , Parent (Registered Sample - TIS - GRI) , SlideAntibodyParent (Text) , SlideAntibodyConcentration (Text) , AntibodyConcentrationUnits (Text) , Instrument (Text) , DataType (Text) , Checksum_PrimaryData (Text) , Checksum_PrimaryType (Text)
Not specified
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , SampleCreationDate (Text) , Protocol (URI) , Type (Text) , Parent (Text) , Instrument (Text) , Scientist (Text) , ReagentManufacturer (Text) , ReagentCatalogNum (Text) , Checksum_PrimaryData (Text) , Checksum_PrimaryType (Text) , Repository (Text) , RepositoryID (Text) , PRIDE_FileType (Text) , PRIDE_ExperimentType (Text) , PRIDE_Modification (Text) , PRIDE_Quantification (Text)
Not specified
UID (Text) *, Name (Text) , Catalog# (Text) , Vendor (Text) , Analyte (Text) , Fluorophore (Text) , ExperimentType (Text) , Concentration (Text)
Not specified
UID (Text) *, Name (Text) , Catalog# (Text) , Vendor (Text) , Analyte (Text) , Clone (Text) , Fluorophore (Text) , ExperimentType (Text)
Not specified
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Scientist (Text) , SampleCreationDate (Text) , Protocol (URI) , Parent (Text) , Instrument (Text) , InstrumentUser (Text) , LuminexDesign (Text) , PlateDesign_File (Text) , PlateDesign_Link (URI)
Not specified
UID (Text) *, Name (Text) , File_PrimaryData (Text) , File_SecondaryData (Text) , Link_PrimaryData (URI) , Link_SecondaryData (Text) , Accession (Text) , Repository (Text) , RepositoryID (Text) , LibraryStrategy (Text) , LibrarySource (Text) , LibrarySelection (Text) , LibraryDesign (Text) , Parent (Registered Sample - DNA CEL - GRI) , DataType (Text) , SequencingType (Text) , Sequencer (Text) , Checksum_PrimaryData (Text) , Checksum_PrimaryType (Text) , Checksum_SecondaryData (Text) , Checksum_SecondaryType (Text) , Protocol (URI)
Not specified
UID (Text) *, Name (Text) , File_PrimaryData (Text) , File_SecondaryData (Text) , Link_PrimaryData (URI) , Link_SecondaryData (URI) , Accession (Text) , Repository (Text) , RepositoryID (Text) , LibraryStrategy (Text) , LibrarySource (Text) , LibrarySelection (Text) , LibraryDesign (Text) , Parent (Registered Sample - DNA TIS - GRI) , DataType (Text) , SequencingType (Text) , Sequencer (Text) , Checksum_PrimaryData (Text) , Checksum_PrimaryType (Text) , Checksum_SecondaryData (Text) , Checksum_SecondaryType (Text) , Protocol (URI)
Not specified
UID (Text) *, Name (Text) , Protocol (URI) , SampleCreationDate (Text) , Scientist (Text) , Parent (Registered Sample - CEL - GRI) , Type (Text) , Barcode (Text) , BarcodeType (Text) , Barcode2 (Text) , Barcode2Type (Text)
Not specified
UID (Text) *, Name (Text) , Protocol (URI) , SampleCreationDate (Text) , Scientist (Text) , Parent (Registered Sample - TIS - GRI)
Not specified
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , Checksum_PrimaryData (Text) , Parent (Text) , Scientist (Text) , Instrument (Text) , SampleCreationDate (Text) , Type (Text) , Analyte (Text) , AnalyteConc (Text) , AnalyteConcUnits (Text) , Checksum_PrimaryType (Text) , Protocol (URI)
Not specified
UID (Text) *, Name (Text) , Protocol (URI) , Source (Text) , Treatment (Text) , Parent (Registered Sample - TIS - GRI) , Scientist (Text) , Type (Text)
Not specified
UID (Text) *, Name (Text) , Scientist (Text) , Protocol (URI) , Parent (Registered Sample - PAV - GRI) , Type (Text) , Organ (Text) , Notes (Text)
Not specified
UID (Text) *, Name (Text) , Scientist (Text) , Protocol (URI) , Type (Text) , Procedure (Text) , Parent (Registered Sample - PAT - GRI) , Notes (Text)
Not specified
UID (Text) *, Name (Text) , Age (Text) , Sex (Text) , Disease (Text) , Scientist (Text) , Protocol (URI) , MenstrualStage (Text)
Not specified
UID (Text) *, Name (Text) , Protocol (Web link) , Species (Text) , CellLine (Text) , Reference (Web link) , Source (Text) , Media (Text) , Parent (Text) , Scientist (Text) , Type (Text)
Not specified
UID (Text) *, Name (Text) , Parent (Registered Sample - MUS - NIV) , Scientist (Text) , Protocol (URI) , Organ (Text) , OrganDetail (Text) , StorageType (Text) , Notes (Text)
Not specified
UID (Text) *, Name (Text) , Scientist (Text) , Protocol (Web link) , DateOfBirth (Text) , Sex (Text) , Genotype (Text) , StorageLocation (Text) , Cohort (Text) , SacrificeDate (Text) , Treatment1Type (Text) , Treatment1 (Text) , Treatment1Date (Text) , Treatment1Parent (Registered Sample - CHM - NIV) , Treatment1Route (Text) , Treatment1Dose (Text) , Treatment1DoseUnits (Text) , Treatment2Type (Text) , Treatment2 (Text) , Treatment2Date (Text) , Treatment2Parent (Registered Sample - CHM - NIV) , Treatment2Route (Text) , Treatment2Dose (Text) , Treatment2DoseUnits (Text)
Not specified
UID (Text) *, Name (Text) , Scientist (Text) , Protocol (Web link) , Formula (Text) , Lab (Text) , CASNumber (Text) , Vendor (Text) , Catalog# (Text)
Not specified
JP
UID (Text) *, Name (Text) , ID (Text) , Age (Text) , Sex (Text) , StatusHIV (Text) , Contact (Text) , SubjectLocation (Text) , Scientist (Text) , Scarring (Text) , Height (Text) , HeightUnits (Text) , Weight (Text) , WeightUnits (Text) , Study (Text) , BaselineCohort (Text)
Not specified
JP
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (Text) , Scientist (Text) , Parent (Text)
Not specified
JP
UID (Text) *, Name (Text) , Catalog# (Text) , Vendor (Text) , Analyte (Text) , Clone (Text) , Fluorophore (Text) , ExperimentType (Text) , CatalogLink (Text)
Not specified
JP
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (Text) , Parent (Text) , Scientist (Text) , Checksum_PrimaryData (Text) , Repository (Text) , RepositoryID (Text) , Checksum_PrimaryType (Text) , SampleCreationDate (Text)
Not specified
JP
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (Text) , Scientist (Text) , SampleCreationDate (Text) , Parent (Text) , Protocol (Text) , Instrument (Text) , Checksum_PrimaryData (Text) , Fixation (Text) , Fixative (Text) , Stimulation (Text) , AntibodyParent (Text) , CompensationFCSParent (Text) , Repository (Text) , RepositoryID (Text) , Checksum_PrimaryType (Text)
Not specified
JP
UID (Text) *, Name (Text) , Scientist (Text) , SampleCreationDate (Text) , Protocol (Text) , Parent (Text) , Type (Text) , OrganDetail (Text) , StorageSite (Text) , StorageLocation (Text) , CellCount (Text)
Not specified
JP
UID (Text) *, Name (Text) , Scientist (Text) , Protocol (Text) , Type (Text) , Procedure (Text) , Parent (Registered Sample - PAT - JP) , VisitFacility (Text) , VisitLocation (Text) , TestType (Text) , TestResult (Text) , TestResultFile (Text) , SampleCreationDate (Text) , Classification (Text) , ExperimentalTimepoint (Text)
Not specified
PERM KAMM
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (Text) , Scientist (Text) , Type (Text) , Parent (Text) , Protocol (Text) , Checksum_PrimaryData (Text)
Not specified
CLOT KAmm
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (Text) , Scientist (Text) , Type (Text) , Parent (Text) , Checksum_PrimaryData (Text) , Protocol (Text)
Not specified
CCE KAmm
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (Text) , Scientist (Text) , Type (Text) , Parent (Text) , Protocol (Text) , Checksum_PrimaryData (Text)
Not specified
UID (Text) *, Name (Text) , Parent (Text) , Scientist (Text)
Not specified
Kamm
UID (Text) *, Name (Text) , Catalog# (Text) , Vendor (Text) , Analyte (Text) , Fluorophore (Text) , ExperimentType (Text) , CatalogLink (Text)
Not specified
Kamm
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (Text) , Checksum_PrimaryData (Text) , Scientist (Text) , Parent (Text) , Protocol (Text)
Not specified
Kamm
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (Text) , Scientist (Text) , SampleCreationDate (Text) , Parent (Text) , Protocol (Text) , Instrument (Text) , Checksum_PrimaryData (Text) , AntibodyParent (Text) , Type (Text) , Repository (Text) , RepositoryID (Text) , Timepoint (Text)
Not specified
D.IMG KAMM
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (Text) , Scientist (Text) , Protocol (Text) , SampleCreationDate (Text) , Parent (Text) , DataType (Text) , Checksum_PrimaryData (Text) , StimulationDate (Text)
Not specified
OOC KAM
UID (Text) *, Name (Text) , Parent (Text) , Type (Text) , Stimulation (Text) , Scientist (Text) , Protocol (Text) , Protocol_Device (Text) , Material (Text)
Not specified
CEL KAM
UID (Text) *, Name (Text) , Type (Text) , Protocol (Text) , Scientist (Text) , StorageLocation (Text) , StorageSite (Text) , Species (Text) , CellLine (Text) , Source (Text) , Media (Text)
Not specified
Boom 2.0
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (Text) , Checksum_PrimaryData (Text) , Scientist (Text) , Parent (Text) , Protocol (Text) , Software (Text)
Not specified
BOOM 2.0
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (Text) , Scientist (Text) , SampleCreationDate (Text) , Parent (Text) , Protocol (Text) , Instrument (Text) , Checksum_PrimaryData (Text) , AntibodyParent (Text) , CompensationFCSParent (Text) , Repository (Text) , RepositoryID (Text)
Not specified
ABP Boom 2.0
UID (Text) *, Name (Text) , Parent (Text)
Not specified
Boom
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (Text) , Parent (Text) , Scientist (Text) , Checksum_PrimaryData (Text) , Repository (Text) , RepositoryID (Text)
Not specified
BOOM
UID (Text) *, Name (Text) , Catalog# (Text) , Vendor (Text) , Analyte (Text) , Fluorophore (Text) , Clone (Text) , ExperimentType (Text) , Panel (Text)
Not specified
TIS Boom 2.0
UID (Text) *, Name (Text) , Type (Text) , Parent (Text) , SampleCreationDate (Text) , Organ (Text) , OrganDetail (Text) , Scientist (Text) , Protocol (Text) , StorageSite (Text) , StorageLocation (Text) , BALCollectedVolume (Text) , BALCollectedVolumeUnits (Text) , BALInstilledVolume (Text) , BALInstilledVolumeUnits (Text) , CellCount (Text)
Not specified
PAV Boom 2.0
UID (Text) *, Name (Text) , Scientist (Text) , SampleCreationDate (Text) , Type (Text) , Procedure (Text) , Protocol (Text) , Parent (Text) , ExperimentalTimepoint (Text) , VisitFacility (Text) , VisitLocation (Text) , TestType (Text) , TestResult (Text) , TestResultFile (Text) , Classification (Text)
Not specified
PAT Boom lab 2.0
UID (Text) *, Name (Text) , Scientist (Text) , Contact (Text) , ID (Text) , Age (Text) , Sex (Text) , SubjectLocation (Text) , Height (Text) , HeightUnits (Text) , Weight (Text) , WeightUnits (Text) , Study (Text) , BaselineCohort (Text) , Scarring (Text) , StatusHIV (Text)
Not specified
HRMS try # 3
UID (Text) *, Name (Text) , File_PrimaryData (Text) , Link_PrimaryData (Text) , DataType (Text) , Scientist (Text) , Parent (Text) , Genome (Text) , Protocol (Text) , SampleCreationDate (Text) , File_SecondaryData (Text) , Checksum_PrimaryData (Text) , Checksum_SecondaryData (Text)
Not specified
HRMS 2
UID (Text) *, Name (Text) , File_PrimaryData (Text) , Scientist (Text) , SampleCreationDate (Text) , Protocol (Text) , Link_PrimaryData (Text) , Parent (Text) , DataType (Text) , SequencingType (Text) , Sequencer (Text) , F_bp (Text) , R_bp (Text) , NumReads (Text) , LibraryStrategy (Text) , LibrarySource (Text) , LibrarySelection (Text) , Checksum_PrimaryData (Text) , File_SecondaryData (Text) , Link_SecondaryData (Text) , Checksum_SecondaryData (Text) , LibraryDesign (Text) , Accession (Text) , Repository (Text)
Not specified
HF
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (Text) , Parent (Text) , Protocol (Text) , RadiationSource (Text) , Type (Text) , Scientist (Text) , Instrument (Text) , Checksum_PrimaryData (Text) , Notes (Text)
Not specified
HF
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (Text) , Parent (Text) , Type (Text) , Scientist (Text) , Protocol (Text) , Temperature (Text) , TemperatureUnits (Text) , Solvent (Text) , Band (Text) , Instrument (Text) , Notes (Text) , Checksum_PrimaryData (Text)
Not specified
HF
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (Text) , Parent (Text) , Type (Text) , Scientist (Text) , Instrument (Text) , Repository (Text) , RepositoryID (Text)
Not specified
HF
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (Text) , Parent (Text) , Scientist (Text) , Checksum_PrimaryData (Text) , Type (Text)
Not specified
HF
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (Text) , Protocol (Text) , Type (Text) , Parent (Text) , Instrument (Text) , Scientist (Text) , Checksum_PrimaryData (Text) , IonizationMethod (Text)
Not specified
HF
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (Text) , Parent (Text) , Scientist (Text) , Checksum_PrimaryData (Text)
Not specified
HF
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (Text) , Protocol (Text) , Type (Text) , Parent (Text) , Instrument (Text) , Scientist (Text) , Solvent (Text) , Frequency (Text) , FrequencyUnits (Text) , Checksum_PrimaryData (Text)
Not specified
HF
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (Text) , Parent (Text) , Scientist (Text) , SampleCreationDate (Text) , Checksum_PrimaryData (Text)
Not specified
HF
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (Text) , Parent (Text) , Scientist (Text) , SampleCreationDate (Text) , Protocol (Text) , Type (Text) , Solvent (Text) , Instrument (Text)
Not specified
HF
UID (Text) *, Name (Text) , Scientist (Text) , Protocol (Text) , Parent (Text) , Formula (Text) , Lab (Text) , CASNumber (Text) , Type (Text) , Vendor (Text) , Catalog# (Text)
Not specified
HRMS
UID (Text) *, Name (Text) , File_PrimaryData (Text) , Scientist (Text) , Parent (Text) , Type (Text) , Protocol (Text)
Not specified
HRMS
UID (Text) *, Name (Text) , File_PrimaryData (Text) , Scientist (Text) , Protocol (Text) , Lab (Text) , Phage (Text) , CellLine (Text) , Parent (Text)
Not specified
HRMS
UID (Text) *, Name (Text) , Protocol (Text) , SampleCreationDate (Text) , Scientist (Text) , Parent (Text) , Type (Text) , Barcode (Text) , BarcodeType (Text) , Barcode2 (Text) , Barcode2Type (Text) , Lab (Text)
Not specified
HRMS
UID (Text) *, Name (Text) , Scientist (Text) , SampleCreationDate (Text) , Parent (Text) , Organ (Text) , OrganDetail (Text) , StorageLocation (Text) , StorageType (Text) , BioSampleAccession (Text)
Not specified
HRMS
UID (Text) *, Name (Text) , Scientist (Text) , Protocol (Text) , Type (Text) , Parent (Text) , SampleCreationDate (Text) , Treatment1 (Text) , Treatment1Type (Text) , Treatment1Route (Text) , Treatment1Dose (Text) , Treatment1DoseUnits (Text)
Not specified
HRMS
UID (Text) *, Name (Text) , Scientist (Text) , DateOfBirth (Text) , Sex (Text) , Genotype (Text) , Notes (Text) , Lab (Text)
Not specified
UID (Text) *, Name (Text) , Protocol (Text) , Species (Text) , Genotype (Text) , Media (Text) , Treatment (Text) , Scientist (Text) , Type (Text) , BioSampleAccession (Text)
Not specified
UID (Text) *, File_PrimaryData (Text) *, Link_PrimaryData (Text) , Scientist (Text) , SampleCreationDate (Date) , Type (Text) , Description (Text) , Parent (Text) , Lab (Text) , Protocol (Text) , ShoreDist (Real number) , ShoreDistUnits (Text) , WaterDepth (Real number) , WaterDepthUnits (Text) , LanderRightLegHeight (Real number) , LanderLeftLegHeight (Real number) , LanderBackLegHeight (Real number) , LanderLegHeightUnits (Text) , FloorDist (Real number) , FloorDistUnits (Text) , SensingVolumeSeparation (Real number) , SensingVolumeSeparationUnits (Text) , ADVVelocityRange (Real number) , ADVVelocityUnits (Text) , ADVPowerLevel (Text) , RunStartTime (Text) , RunDuration (Real number) , RunDurationUnits (Text) , IntegrationTime (Real number) , IntegrationTimeUnits (Text) , Frequency (Real number) , FrequencyUnits (Text) , Wavelength (Real number) , WavelengthUnits (Text) , ModulationFrequency (Real number) , ModulationFrequencyUnits (Text) , DatapointTime (Real number) , DatapointTimeUnits (Text) , ComparatorReference (Real number) , ComparatorReferenceUnits (Text) , LEDCurrentAvgStart (Real number) , LEDCurrentStdevStart (Real number) , LEDCurrentStartTime (Text) , LEDCurrentAvgEnd (Real number) , LEDCurrentStdevEnd (Real number) , LEDCurrentUnits (Text) , LEDCurrentEndTime (Text) , BatteryLevelStart (Real number) , BatteryLevelStartTime (Text) , BatteryLevelEnd (Real number) , BatteryLevelEndTime (Text) , BatteryLevelUnits (Text) , TOCStart (Real number) , TOCStartTime (Text) , TOCEnd (Real number) , TOCEndTime (Text) , TOCUnits (Text) , TemperatureStart (Real number) , TemperatureStartTime (Text) , ThermometerStart (Text) , TemperatureEnd (Real number) , TemperatureEndTime (Text) , ThermometerEnd (Text) , TemperatureUnits (Text) , UncompensatedConductivityStart (Real number) , TemperatureCompensationCoefficientConductivity (Text) , ConductivityStartTime (Text) , UncompensatedConductivityEnd (Real number) , ConductivityEndTime (Text) , UncompensatedConductivityUnits (Text) , FluorescenceLinearCalibrationSlope (Real number) , FluorescenceLinearCalibrationIntercept (Real number) , FluorescenceLinearCalibrationDate (Date) , FluorescenceLinearCalibrationUnits (Text) , TemperatureLinearCalibrationSlope (Real number) , TemperatureLinearCalibrationIntercept (Real number) , TemperatureCalibrationDate (Date) , TemperatureCalibrationUnits (Text) , ConductivityLinearCalibrationSlope (Real number) , ConductivityLinearCalibrationIntercept (Real number) , ConductivityCalibrationDate (Date) , ConductivityCalibrationUnits (Text) , LEDCurrentLinearCalibrationSlope (Real number) , LEDCurrentLinearCalibrationIntercept (Real number) , LEDCurrentCalibrationDate (Date) , LEDCurrentCalibrationUnits (Text)
Not specified
UID (Text) *, Name (Text) *, LocationType (Text) , Description (Text) , GPS (Text) , GPSUnits (Text)
Not specified
att1-edited (Controlled Vocabulary - CV test) *, after (String)
Not specified
UID (Text) *, Name (Text) *, File_PrimaryData (Text) *, Link_PrimaryData (Text) , SampleCreationDate (Date) , DataType (Text) , Protocol (Text) , Parent (Text) , Scientist (Text) , Lab (Text)
Not specified
UID (Text) *, Name (Text) *, File_PrimaryData (Text) , Link_PrimaryData (URI) , SampleCreationDate (Date) , Scientist (Text) , DataType (Text) , Barcodes (Text) , Genes (Text) , Metadata (Text) , Protocol (Text) , Parent (Text) , Lab (Text)
Not specified
UID (Text) *, File_PrimaryData (Text) *, Link_PrimaryData (Text) , ModelName (Text) , ModelType (Text) , ModelDescription (Text) , Domain (Text) , Lab (Text) , Scientist (Text) *, SourceCode (Text) , Parent (Text) , SampleCreationDate (Date) , Docker (Text) , Notes (Text)
Not specified
UID (Text) *, Name (Text) *, File_PrimaryData (Text) , Link_PrimaryData (Text) , SampleCreationDate (Date) , Scientist (Text) , CoScientist (Text) , Protocol (Text) , Lab (Text) , Phage (Text) , CellLine (Text) , Parent (Text) , PlaqueTiter (Text) , PlaqueTiterCount (Real number) , ColonyTiter (Text) , ColonyTiterCount (Real number) , TiterEfficiency (Real number) , Plate (Text) , MutationFreq (Real number)
Not specified
UID (Text) *, Name (Text) *, Scientist (Text) , Protocol (Text) , DateOfBirth (Date) , Sex (Text) , Genotype (Text) , StorageType (Text) , Treatment1Type (Text) , Treatment1 (Text) , Treatment1Route (Text) , Protocol_Treatment1 (Text) , Treatment2Type (Text) , Treatment2 (Text) , Treatment2Route (Text) , Protocol_Treatment2 (Text) , SacrificeDate (Date)
Not specified
UID (Text) *, Name (Text) *, Scientist (Text) , SampleCreationDate (Date) , Protocol (Text) , Parent (Text) , Concentration (Real number) , ConcentrationUnits (Text)
Not specified
UID (Text) *, File_PrimaryData (Text) *, Link_PrimaryData (Text) , SampleCreationDate (Date) , Protocol_Data (Text) , Parent (Text) , QuantificationMethod (Text) , File_SearchEngineOutput (Text) , Link_SearchEngineOutput (Text)
Not specified
UID (Text) *, File_PrimaryData (Text) *, Link_PrimaryData (Text) , SampleCreationDate (Date) , Protocol_Data (Text) , ExperimentType (Text) , ParentList (Text) , Instrument (Text) , Scientist (Text) , Labels (Text) , QCInstrument (Text) , QCUser (Text) , Calibration (Text) , ReagentManufacturer (Text) , ReagentCatalogNum (Text) , ProteinSeqFile (Text)
Not specified
UID (Text) *, File_PrimaryData (Text) *, Link_PrimaryData (Text) , Scientist (Text) , Protocol (Text) , CreationDate (Date) , Parent (Text) , SlideStain (Text) , SlideStain2 (Text) , SlideAntibody (Text) , SlideAntibodyConcentration (Text) , Foci (Text) , NumFoci (Real number) , Instrument (Text) , ImageArea (Real number) , ObjectArea (Real number) , AreaUnits (Text) , Contact (Text)
Not specified
UID (Text) *, Name (Text) *, Scientist (Text) , SampleCreationDate (Date) , Protocol (Text) , Parent (Text) , Organ (Text) , OrganDetail (Text) , StorageType (Text)
Not specified
Concentrations of PAH metabolites in bile and PFAS parent compounds in liver
Fish ID (Registered Sample - In vivo biometrics) *, Exposure (Text) , Gender (String) , PFOA (Real number) , PFNA (Real number) , PFTrDA (Real number) , PFOS (Real number) , 1-OH-Naphthalene (Real number) , 2-OH-Naphthalene (Real number) , 1-OH-Phenanthrene (Real number) , 1-OH-Pyrene (Real number)
Not specified
Fish ID (Registered Sample - In vivo biometrics) *, Exposure (Text) , cyp1a (Real number) , acox1 (Real number)
Not specified
Measurement of tail intensities in the Comet Assay - used in in vivo 1
Fish ID (Registered Sample - In vivo biometrics) *, Exposure (Text) , Tail intensity (%) (Real number)
Not specified
Measurement of cholinesterase, ALAT and ASAT activities + cortisol and total protein levels - in vivo studies
Fish ID (Registered Sample - Biometrics in vivo-nord) *, Exposure (Text) , Cholinesterase (Real number) , Cortisol (Real number) , ASAT (Real number) , ALAT (Real number) , Protein, total (Real number)
Not specified
Template for chemical quantification of CPM and TCP in liver and bile.
Fish ID (Registered Sample - Biometrics in vivo-nord) *, Exposure (String) , Liver CPM (Real number) , Liver TCP (Real number) , Bile CPM (Real number) , Bile TCP (Real number)
Not specified
Template for biometrics for IV-nord experiment
Fish ID (Integer) *, Olsvik ID (Integer) , Date (Date) , Exposure (String) , Nominal dose (mg/kg) (Text) , Measured dose (mg/kg) (Real number) , Weight start (g) (Real number) , Weight end (g) (Real number) , Growth (Real number) , SGR (Real number) , Length (cm) (Real number) , Gender (F/M) (String) , Liver weight (g) (Real number) , Gonade weight (g) (Real number) , Condition factor (CF) (Real number) , Hepatosomatic index (HSI) (Real number) , Gonadosomatic index (GSI) (Real number) , Gross pathology (Text)
Not specified
Template for EROD activity measured in exposure studies
Fish ID (Registered Sample - Biometrics in vivo-nord) *, Exposure (String) , EROD activity (String)
Not specified
Semi-quantitative measurement of Cyp1a protein amount using the ELISA methods. Cyp1a amount is expressed as absorbance values at 450 nm.
Fish ID (Registered Sample - In vivo biometrics) *, Exposure (Text) , Cyp1a (A450) (Real number)
Not specified
Concentration of vitellogenin measured in cod blood plasma - in vivo studies
Fish ID (Registered Sample - In vivo biometrics) *, Exposure (Text) , Gender (String) , Vitellogenin ng/mL (Real number)
Not specified
Enzyme activity of glutathione S-transferase and catalase in in vivo exposure studies
Fish ID (Registered Sample - In vivo biometrics) *, Exposure (Text) , Gst activity nmol/min/mg (Real number) , Cat activity nmol/min/mg (Real number)
Not specified
Concentrations of vitellogenin in blood plasma measured in field studies
Fish ID (Registered Sample - Field study biometry data) *, Station (Integer) , Gender (String) , Vitellogenin mg/mL (Real number)
Not specified
TBARS assay: Measurement of oxidative stress
Fish ID (Registered Sample - Field study biometry data) *, Station (Integer) , MDA nmol/mg (Real number)
Not specified
Gene expression data of cod liver including the genes cyp1a, cat, hsp70, gsta3b, fabp7, fasn, acly, and scd.
Fish ID (Registered Sample - Field study biometry data) *, Station (Integer) , cyp1a (Real number) , cat (Real number) , hsp70 (Real number) , gsta3b (Real number) , fabp7 (Real number) , fasn (Real number) , acly (Real number) , scd (Real number)
Not specified
qPCR results using absolute quantification, genes involved in steroidogenic pathways
Fish ID (Registered Sample - Field study biometry data) *, Station (Integer) , star (Real number) , cyp17 (Real number) , p450scc (Real number) , cyp19 (Real number) , 3βhsd (Real number) , 11βhsd (Real number) , 17βhsd (Real number) , 20βhsd (Real number)
Not specified
Concentrations of contaminants in cod liver
Fish ID (Registered Sample - Field study biometry data) *, Sample number (Integer) , Lipid% (Real number) , Station (Integer) *, PFHxA (Text) , PFHpA (Text) , PFOA (Text) , PFNA (Text) , PFDA (Text) , PFUdA (Text) , PFDoDA (Text) , PFTrDA (Text) , PFTeDA* (Text) , PFHxS* (Text) , PFOS (Text) , FOSA (Text) , N-MeFOSA* (Text) , N-EtFOSA* (Text) , N-EtFOSE* (Text) , Sum PFAS10 (Text) , BDE-28 (Text) , BDE-47 (Text) , BDE-100 (Text) , BDE-99 (Text) , BDE-154 (Text) , BDE-153 (Text) , BDE-183 (Text) , Sum7PBDE (Text) , HBCDD (Text) , HBB (Text) , α-HCH (Text) , β-HCH (Text) , γ-HCH (Text) , Sum HCH (Text) , p,p'-DDE (Text) , o,p'-DDD (Text) , p,p'-DDD (Text) , o,p'-DDT (Text) , p,p'-DDT (Text) , Sum DDTs (Text) , HCB (Text) , Oxyklordan (Text) , trans-Klordan (Text) , cis-Klordan (Text) , trans-Nonaklor (Text) , cis-Nonaklor (Text) , Sum chlordanes (Text) , Mirex (Text) , PCB-52 (Text) , PCB-47 (Text) , PCB-74 (Text) , PCB-66 (Text) , PCB-56 (Text) , PCB-101 (Text) , PCB-99 (Text) , PCB-87 (Text) , PCB-136 (Text) , PCB-110 (Text) , PCB-151 (Text) , PCB-149 (Text) , PCB-118 (Text) , PCB-114 (Text) , PCB-153 (Text) , PCB-105 (Text) , PCB-141 (Text) , PCB-137 (Text) , PCB-138 (Text) , PCB-187 (Text) , PCB-183 (Text) , PCB-128 (Text) , PCB-156 (Text) , PCB-157 (Text) , PCB-180 (Text) , PCB-170 (Text) , PCB-199 (Text) , PCB-196 (Text) , PCB-189 (Text) , PCB-194 (Text) , PCB-206 (Text) , PCB-209 (Text) , Sum 32PCBs (Text) , Sum7PCBs* (Text) , Li (Text) , Mg (Text) , Al (Text) , V (Text) , Cr (Text) , Fe (Text) , Co (Text) , Ni (Text) , Cu (Text) , Zn (Text) , As (Text) , Se (Text) , Mo (Text) , Ag (Text) , Cd (Text) , Hg (Text) , Pb (Text)
Not specified
Template for relative protein expression of Cyp3a and MT in field studies
Fish ID (Registered Sample - Field study biometry data) *, Station (Integer) , Relative Cyp3a expression (Real number) , Relative Mt expression (Real number)
Not specified
Fish ID (Integer) *, Date start (Date) , Date sampling (Date) , Exposure compound (String) , Exposure dose (String) , Tank/group (Integer) , Exposure time (day) (Integer) , Weight (g) (Real number) , Length (cm) (Real number) , Gender (F/M) (String) , Liver weight (g) (Real number) , Gonade weight (g) (Real number) , Condition factor (CF) (Real number) , Hepatosomatic index (HSI) (Real number) , Gonadosomatic index (GSI) (Real number) , Gross pathology (String)
Not specified
Concentrations of estradiol (E2) and testosterone (T) in cod plasma in field studies (groups defined by stations).
Fish ID (Registered Sample - Field study biometry data) *, Station (Integer) , Estradiol (pg/mL) (Real number) , Testosterone (pg/mL) (String)
Not specified
Template for in vivo biometrics data
Fish ID (Integer) *, Date (Date) , Exposure (String) *, Weight (g) (Real number) ( g ) , Length (cm) (String) ( cm ) , Gender (F/M) (String) , Liver weight (g) (Real number) ( g ) , Gonade weight (g) (Real number) ( g ) , Condition factor (CF) (Real number) , Hepatosomatic index (HSI) (Real number) , Gonadosomatic index (GSI) (Real number) , Gross pathology (String)
Not specified
Measurements of Gst and Cat enzyme activity in field studies such as Kollevåg.
Fish ID (Registered Sample - Field study biometry data) *, Station (Integer) , Gst activity nmol/min/mg (Real number) , Cat activity nmol/min/mg (Real number)
Concentrations of PAH metabolites (1-OH-pyr, 1-OH-phen, 3-OH-BaP) in bile of fish at different stations
Fish ID (Registered Sample - Field study biometry data) *, Station (Integer) *, 1-OH-phen ng/g (Real number) , 1-OH-pyr ng/g (Real number) , 3-OH-BaP ng/g (Real number)
Not specified
Template for biometry data for field studies such as Kollevåg, Oslofjord etc.
Fish ID (Integer) *, Date (Date) , Station (Integer) *, Weight (g) (Real number) ( g ) , Length (cm) (Real number) ( cm ) , Gender (F/M) (String) *, Liver weight (g) (Real number) ( g ) , Gonade weight (g) (Real number) ( g ) , Condition factor (CF) (Real number) , Hepatosomatic index (HSI) (Real number) , Gonadosomatic index (GSI) (Real number) , Comments (String) , Severity of pathology (String)
Not specified
FASTQ Paired ID (String) *, Sample Origine ID (Registered Sample - Samples for dCod) *, Library Origine ID (Registered Sample - Library preparation) *, FASTQ R1 (String) *, FASTQ R2 (String) *
Not specified
Library ID (String) *, Sample Origine ID (Registered Sample - Samples for dCod) *
Not specified
Count ID (String) *, Sample Origine ID (Registered Sample - Samples for dCod) *, Bam Origine ID (Registered Sample - BAM file) *
Not specified
Bam ID (String) *, Sample Origine ID (Registered Sample - Samples for dCod) *, FASTQ Paired Origine ID (Registered Sample - FASTQ Paired) *
Not specified
Sample ID (String) *, Sample name (String) , Date sampled (Date) , Treatment (String) , Fish# (sampling) (Integer) , Fish# (RNA-seq) (Integer) , Body wt in (g) (Integer) , Liver wt in (g) (Integer) , Sex (String) , Species (String) , Tissue (String)
Not specified
SAMPLE TYPE to describe samples of CEN.PK-113-7D yeast strain upon metabolic perturbation of the steady state culture by glucose pulse
SEEK ID (Integer) *, STRAIN (Registered Strain) , Genotype (String) , Cell culture ID (String) , Cell culture start date (Date) , Glucose pulse (concentration) (Integer) , Sampling date (Date) , Time after glucose pulse (Integer) , Cell part (Controlled Vocabulary - SysMO Sample Organism Part) , Age at sampling (Integer) *
Sample type representing the old BioSample model available to SysMO and VirtualLiver
Sample ID or name (String) *, Cell culture name (String) *, Cell culture lab identifier (String) , Cell culture start date (Date) , Cell culture growth type (Controlled Vocabulary - SysMO Cell Culture Growth Type) , Cell culture comment (Text) , Cell culture provider name (String) , Cell culture provider identifier (String) , Cell culture strain (Registered Strain) *, Sample lab identifier (String) *, Sampling date (Date) , Age at sampling (Integer) , Sample provider name (String) , Sample provider identifier (String) , Sample comment (Text) , Sample organism part (Controlled Vocabulary - SysMO Sample Organism Part)
Not specified
