Data files
What is a Data file?Filters
Kinetic characterisation of FBPAase. Expermental data for enzyme reaction rates with increasing concentrations of DHAP and GAP.
Creators: Jacky Snoep, Theresa Kouril
Submitter: Jacky Snoep
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Simulation results of FBPAase of experimental data for DHAP and GAP saturation
Creator: Jacky Snoep
Submitter: Jacky Snoep
Creator: Thomas Rimpf
Submitter: Thomas Rimpf
Creator: Thomas Rimpf
Submitter: Thomas Rimpf
Creator: Thomas Rimpf
Submitter: Thomas Rimpf
Creator: Thomas Rimpf
Submitter: Thomas Rimpf
acetic acid addition 70mM
Creator: Sebastian Curth
Submitter: Sebastian Curth
pulse acetic acid: 70mM (2x), 80mM, shift to 4.5, pulse acetic acid: 70mM
Creator: Sebastian Curth
Submitter: Sebastian Curth
acetic acid addition
step experiment: 50mM, 70mM, 100mM, 120mM
pulse 200mM
Creator: Sebastian Curth
Submitter: Sebastian Curth
acetic acid pulse 100mM acetic acid step 50mM, 70mM
Creator: Sebastian Curth
Submitter: Sebastian Curth
Creator: Thomas Rimpf
Submitter: Thomas Rimpf
Creators: Trond Ellingsen, Øyvind Jakobsen, Per Bruheim, Håvard Sletta, Anders Øverby, Sven Even Borgos, Sunniva Hoel, Alexander Wentzel
Submitter: Jay Moore
Creators: David Rand, R Jansen, Maria Elena Merlo, Morris Swertz, Preben Krabben, Kay Nieselt, Wolfgang Wohlleben, Jens Reuther, David Hodgson, Anthony Palathingal, David Wild, Elizabeth Wellington, Gregory Challis, Nigel Burroughs, Walid Omara, William Gaze, Brent Kiernan, Roxane Legaie, Sunniva Hoel, Juan-Francisco Martin, Antonio Rodríguez-García, Trond Ellingsen, Øyvind Jakobsen, Per Bruheim, Håvard Sletta, Anders Øverby, Sven Even Borgos, Jay Moore, Alexander Wentzel, Maggie Smith, Louise Thomas, Eriko Takano, Lubbert Dijkhuizen, Rainer Breitling, M. Tauqeer Alam
Submitter: Jay Moore
This .csv file contains the filtered datset of the anaerobic to aerobic transition. Values are shown if they show a statistically significant change relative to the 0 minute transcriptional profile (t-test p<0.05 and 2-fold cut-off).
Creator: Matthew Rolfe
Submitter: The JERM Harvester
This .csv file contains the filtered datset of the aerobic to anaerobic transition. Values are shown if they show a statistically significant change relative to the 0 minute transcriptional profile (t-test p<0.05 and 2-fold cut-off).
Creator: Matthew Rolfe
Submitter: The JERM Harvester
Excel sheet contains:
- flux distribution solution from best iteration cluster
- quality of the fit (experimental MIDs vs. simulated MIDs)
- Sensitivity analysis for 95% flux parameter confidence interval using a Monte-Carlo approach
Creator: Michael Kohlstedt
Submitter: Michael Kohlstedt
Excel sheet contains:
- flux distribution solution from best iteration cluster
- quality of the fit (experimental MIDs vs. simulated MIDs)
- Sensitivity analysis for 95% flux parameter confidence interval using a Monte-Carlo approach
Creator: Michael Kohlstedt
Submitter: Michael Kohlstedt
Excel sheet contains:
- flux distribution solution from best iteration cluster
- quality of the fit (experimental MIDs vs. simulated MIDs)
- Sensitivity analysis for 95% flux parameter confidence interval using a Monte-Carlo approach
Creator: Michael Kohlstedt
Submitter: Michael Kohlstedt
This .csv file shows FNR activity at different aerobiosis levels
Columns a_old Desired aerobiosis level (Aerobiosis units or %AAU) Bgal_activity Average FNR reporter activity (Miller units) Bgal_STDEV STDEV of FNR reporter activities (Miller units) rDOT(μM) Dissolved oxygen tension (μM) DCW DCW (g/L) [acetate] Extracellular acetate concentration (mM) Qacetate Acetate flux (mmoles/h/gDCW) a_new Actual aerobiosis level in sampled chemostat
Creator: Matthew Rolfe
Submitter: The JERM Harvester
A .pdf files showing graphs of FNR activity at varying aerobiosis levels
Top graph shows no acetate re-calibration Bottom graph shows data with acetate re-calibration
Creator: Matthew Rolfe
Submitter: The JERM Harvester
