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Curation TCs - slides and notes (Google Drive)

COVID-19 Disease Map

Presentations and notes from the COVID19 Disease Map curation telephone conferences.

Creator: Marek Ostaszewski

Submitter: Marek Ostaszewski

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

External Link

Created: 3rd Apr 2020 at 17:09

Shared literature repository: COVID-19-map-curation (Zotero group)

COVID-19 Disease Map

Here we share and organize the literature used to build the components of the COVID-19 DIsease Map

Creator: Marek Ostaszewski

Submitter: Marek Ostaszewski

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

External Link

Created: 3rd Apr 2020 at 17:03, Last updated: 3rd Apr 2020 at 17:03

SIMULATION_V1.5

Simulation Foundries

Scripts and Input Files for Simulation V1.5

Creator: Gudrun Gygli

Submitter: Gudrun Gygli

Investigations: 1 hidden item

Studies: Simulation Foundry for Methanol-Water Mixtures

Assays: Simulation Version 1.5

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Created: 24th Oct 2019 at 09:25, Last updated: 23rd Mar 2020 at 15:54

/scripts/README.MD

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_09_annotation-GFFmerged

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Created: 23rd Mar 2020 at 10:29, Last updated: 23rd Mar 2020 at 10:29

/README.MD

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_09_annotation-GFFmerged

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Created: 23rd Mar 2020 at 10:29, Last updated: 23rd Mar 2020 at 10:29

/output/README.MD

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_09_annotation-GFFmerged

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Created: 23rd Mar 2020 at 10:29, Last updated: 23rd Mar 2020 at 10:29

/input/README.MD

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_09_annotation-GFFmerged

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Created: 22nd Mar 2020 at 23:14, Last updated: 22nd Mar 2020 at 23:14

/scripts/README.MD

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_08_centrifuge_3cvs-GFFmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_08_centrifuge_3cvs-GFFmerged

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Created: 22nd Mar 2020 at 23:14, Last updated: 22nd Mar 2020 at 23:14

/README.MD

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_08_centrifuge_3cvs-GFFmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_08_centrifuge_3cvs-GFFmerged

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Created: 22nd Mar 2020 at 23:14, Last updated: 22nd Mar 2020 at 23:14

/output/README.MD

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_08_centrifuge_3cvs-GFFmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_08_centrifuge_3cvs-GFFmerged

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Created: 22nd Mar 2020 at 23:12, Last updated: 22nd Mar 2020 at 23:12

/input/README.MD

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_08_centrifuge_3cvs-GFFmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_08_centrifuge_3cvs-GFFmerged

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Created: 22nd Mar 2020 at 23:09, Last updated: 22nd Mar 2020 at 23:09

/_Assay_METADATA.TXT

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_08_centrifuge_3cvs-GFFmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_08_centrifuge_3cvs-GFFmerged

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Created: 22nd Mar 2020 at 23:09, Last updated: 22nd Mar 2020 at 23:09

/scripts/README.MD

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_07_Desiree-mapping

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_07_Desiree-mapping

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Created: 22nd Mar 2020 at 23:09, Last updated: 22nd Mar 2020 at 23:09

/README.MD

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_07_Desiree-mapping

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_07_Desiree-mapping

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Created: 22nd Mar 2020 at 23:09, Last updated: 22nd Mar 2020 at 23:09

/output/README.MD

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_07_Desiree-mapping

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_07_Desiree-mapping

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Created: 22nd Mar 2020 at 23:09, Last updated: 22nd Mar 2020 at 23:09

/input/README.MD

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_07_Desiree-mapping

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_07_Desiree-mapping

Download

Created: 22nd Mar 2020 at 23:03, Last updated: 22nd Mar 2020 at 23:03

/input/METADATA.txt

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_07_Desiree-mapping

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_07_Desiree-mapping

Download

Created: 22nd Mar 2020 at 23:02, Last updated: 22nd Mar 2020 at 23:02

/_Assay_METADATA.TXT

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_07_Desiree-mapping

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_07_Desiree-mapping

Download

Created: 22nd Mar 2020 at 23:02, Last updated: 22nd Mar 2020 at 23:02

/scripts/README.MD

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_06_tr_rep-transrate

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_06_tr_rep-transrate

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Created: 22nd Mar 2020 at 23:02, Last updated: 22nd Mar 2020 at 23:02

/README.MD

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_06_tr_rep-transrate

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_06_tr_rep-transrate

Download

Created: 22nd Mar 2020 at 23:02, Last updated: 22nd Mar 2020 at 23:02

/output/README.MD

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_06_tr_rep-transrate

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_06_tr_rep-transrate

Download

Created: 22nd Mar 2020 at 22:59, Last updated: 22nd Mar 2020 at 23:00

/input/README.MD

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_06_tr_rep-transrate

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_06_tr_rep-transrate

Download

Created: 19th Mar 2020 at 11:00, Last updated: 19th Mar 2020 at 11:00

/_Assay_METADATA.TXT

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_06_tr_rep-transrate

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_06_tr_rep-transrate

Download

Created: 19th Mar 2020 at 11:00, Last updated: 19th Mar 2020 at 11:00

/scripts/README.MD

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_05_MSA_3cvs-GFFmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_05_MSA_3cvs-GFFmerged

Download

Created: 19th Mar 2020 at 11:00, Last updated: 19th Mar 2020 at 11:00

/README.MD

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_05_MSA_3cvs-GFFmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_05_MSA_3cvs-GFFmerged

Download

Created: 19th Mar 2020 at 10:59, Last updated: 19th Mar 2020 at 10:59

/output/README.MD

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_05_MSA_3cvs-GFFmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_05_MSA_3cvs-GFFmerged

Download

Created: 19th Mar 2020 at 10:59, Last updated: 19th Mar 2020 at 10:59

/input/README.MD

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_05_MSA_3cvs-GFFmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_05_MSA_3cvs-GFFmerged

Download

Created: 19th Mar 2020 at 10:59, Last updated: 19th Mar 2020 at 10:59

/_Assay_METADATA.TXT

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_05_MSA_3cvs-GFFmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_05_MSA_3cvs-GFFmerged

Download

Created: 19th Mar 2020 at 10:58, Last updated: 19th Mar 2020 at 10:58

/scripts/README.MD

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04_BUSCO_3cvs-GFFmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_04_BUSCO_3cvs-GFFmerged

Download

Created: 19th Mar 2020 at 10:58, Last updated: 19th Mar 2020 at 10:58

/scripts/02_BUSCO_plots.Rmd

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04_BUSCO_3cvs-GFFmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_04_BUSCO_3cvs-GFFmerged

Download

Created: 19th Mar 2020 at 10:58, Last updated: 19th Mar 2020 at 10:58

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