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RDA COVID-19 Recommendations and Guidelines - 4th Release

COVID-19 Disease Map, COVID-19 related studies and tools in Germany

Draft guidelines and recommendations; fourth release, 15 May 2020, version for public review

Creator: see full list of members of the RDA COVID-19 working group: https://www.rd-alliance.org/node/68704/members

Submitter: Martin Golebiewski

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

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Created: 15th May 2020 at 18:15

Model evolution summary

Millar group

Contains the summary of model evolution for the Arabidopsis clock in absolute units. In these process two alternative architectures were proposed and fitted to Flis A et al 2015 Open Biology.

Creators: Uriel Urquiza Garcia, Andrew Millar

Submitter: Uriel Urquiza Garcia

Investigations: Absolute units in Arabidopsis clock models up t...

Studies: P2011, U2019 and U2020 models and modelling res...

Assays: U2019/U2020 models

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Created: 7th May 2020 at 16:53

MESI-STRAT General Information Flyer (english)

MESI-STRAT

No description specified

Creator: Petra Engele

Submitter: Petra Engele

Investigations: 1 hidden item

Studies: 1 hidden item

Assays: 1 hidden item

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Created: 16th Apr 2020 at 09:39

MESI-STRAT General Information Flyer (german)

MESI-STRAT

No description specified

Creator: Petra Engele

Submitter: Petra Engele

Investigations: 1 hidden item

Studies: 1 hidden item

Assays: 1 hidden item

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Created: 16th Apr 2020 at 09:39

Instructions for running the Corona Model of Westerhoff and Kolodkin on JWS Online

Mechanism based modeling viral disease ( COVID-19 ) dynamics in human population

The model is also available on JWS Online (https://jjj.bio.vu.nl/models/westerhoff1/simulate). Here you can find instructions how to write it there.

Creator: Alexey Kolodkin

Submitter: Alexey Kolodkin

Investigations: Construction of differential equation model to ...

Studies: Study the role of permanent reduction in social...

Assays: Systems Biology model of the Corona virus epide...

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Created: 15th Apr 2020 at 11:15, Last updated: 15th Apr 2020 at 11:22

LEOSS Data Dictionary

COVID-19 related studies and tools in Germany

No description specified

Creator: Matthias Löbe

Submitter: Matthias Löbe

Investigations: Lean European Open Survey on SARS-CoV-2 Infecte...

Studies: LEOSS

Assays: LEOSS Clinical Document List

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Created: 14th Apr 2020 at 15:15

Study Protocol Lean European Open Survey on SARS-CoV-2

COVID-19 related studies and tools in Germany

No description specified

Creator: Matthias Löbe

Submitter: Matthias Löbe

Investigations: Lean European Open Survey on SARS-CoV-2 Infecte...

Studies: LEOSS

Assays: LEOSS Clinical Document List

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Created: 14th Apr 2020 at 15:13, Last updated: 14th Apr 2020 at 15:13

/output/supplements/myPlot013.pdf

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

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Created: 19th Mar 2020 at 10:52, Last updated: 11th Apr 2020 at 22:46

/output/supplements/myPlot012.pdf

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

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Created: 19th Mar 2020 at 10:52, Last updated: 11th Apr 2020 at 22:46

/output/supplements/myPlot011.pdf

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

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Created: 19th Mar 2020 at 10:51, Last updated: 11th Apr 2020 at 22:45

/output/supplements/myPlot010.pdf

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

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Created: 19th Mar 2020 at 10:51, Last updated: 11th Apr 2020 at 22:45

/output/supplements/myPlot008.pdf

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

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Created: 19th Mar 2020 at 10:51, Last updated: 11th Apr 2020 at 22:44

/output/supplements/myPlot007.pdf

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

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Created: 19th Mar 2020 at 10:51, Last updated: 11th Apr 2020 at 22:44

/output/supplements/myPlot006.pdf

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

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Created: 19th Mar 2020 at 10:51, Last updated: 11th Apr 2020 at 22:44

/output/supplements/myPlot004.pdf

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

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Created: 19th Mar 2020 at 10:51, Last updated: 11th Apr 2020 at 22:43

/output/supplements/myPlot003.pdf

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

Download

Created: 19th Mar 2020 at 10:51, Last updated: 11th Apr 2020 at 22:43

/output/supplements/myPlot002.pdf

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

Download

Created: 19th Mar 2020 at 10:51, Last updated: 11th Apr 2020 at 22:43

/output/supplements/myPlot005.pdf

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

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Created: 19th Mar 2020 at 10:51, Last updated: 11th Apr 2020 at 22:43

/scripts/04_summary_stPanTr_v4.Rmd

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

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Created: 19th Mar 2020 at 10:54, Last updated: 11th Apr 2020 at 22:09

/scripts/03_stPanTr_components_all.Rmd

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

Download

Created: 19th Mar 2020 at 10:54, Last updated: 11th Apr 2020 at 22:08

/scripts/02_cd-hit-est_cdhit-2d.Rmd

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

Download

Created: 19th Mar 2020 at 10:54, Last updated: 11th Apr 2020 at 22:06

/README.MD

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_cdhit_3cvs-GFFmerged

Creator: Andrej Blejec

Submitters: Andrej Blejec, Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_02_cdhit_3cvs-GFFmerged

Download

Created: 19th Mar 2020 at 10:54, Last updated: 11th Apr 2020 at 21:54

/reports/fasta_METADATA.xlsx

_p_stRT

No description specified

Creator: Maja Zagorscak

Submitter: Maja Zagorscak

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_09_annotation-GFFmerged

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Created: 9th Apr 2020 at 10:14, Last updated: 9th Apr 2020 at 10:14

Contributors of the COVID-19 Map (Google Sheet)

COVID-19 Disease Map

Open listing of contributors to the COVID-19 disease maps

Creator: Marek Ostaszewski

Submitter: Martin Golebiewski

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

Created: 1st Apr 2020 at 16:34, Last updated: 3rd Apr 2020 at 17:13

Curation TCs - slides and notes (Google Drive)

COVID-19 Disease Map

Presentations and notes from the COVID19 Disease Map curation telephone conferences.

Creator: Marek Ostaszewski

Submitter: Marek Ostaszewski

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

External Link

Created: 3rd Apr 2020 at 17:09

Shared literature repository: COVID-19-map-curation (Zotero group)

COVID-19 Disease Map

Here we share and organize the literature used to build the components of the COVID-19 DIsease Map

Creator: Marek Ostaszewski

Submitter: Marek Ostaszewski

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

External Link

Created: 3rd Apr 2020 at 17:03, Last updated: 3rd Apr 2020 at 17:03

SIMULATION_V1.5

Simulation Foundries

Scripts and Input Files for Simulation V1.5

Creator: Gudrun Gygli

Submitter: Gudrun Gygli

Investigations: 1 hidden item

Studies: Simulation Foundry for Methanol-Water Mixtures

Assays: Simulation Version 1.5

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Created: 24th Oct 2019 at 09:25, Last updated: 23rd Mar 2020 at 15:54

/scripts/README.MD

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_09_annotation-GFFmerged

Download

Created: 23rd Mar 2020 at 10:29, Last updated: 23rd Mar 2020 at 10:29

/README.MD

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_09_annotation-GFFmerged

Download

Created: 23rd Mar 2020 at 10:29, Last updated: 23rd Mar 2020 at 10:29

/output/README.MD

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_09_annotation-GFFmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_09_annotation-GFFmerged

Download

Created: 23rd Mar 2020 at 10:29, Last updated: 23rd Mar 2020 at 10:29

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