ExploreGut microbiota analysis of fish sampled in january 2016. The data is found in row 335-548 and downwards (Sheet 1). The first 16 colums contain information about the fish, and the following columns (From R to AJO) each represent an OTU (Operational taxonomic unit) with the given taxonomy for each OTU presented in the bottom row. Sequencing depth was kept at 13000 sequences per sample, thus the numbers presented in the OTU columns represent the number of sequences matching the specific OTU from the total of 13 000 sequences.
The different OTUs are found by clustering all sequences with >97% similarity, before representative sequences (most abundant sequences) are picked from each cluster and assigned taxonomy (through GreenGenes) (Need to check this to be sure) . The sequenced amplicons are from the V3-V4 region of the 16SrRNA gene.
Sequences of each OTU are found here: https://fairdomhub.org/data_files/1400
SEEK ID: https://fairdomhub.org/data_files/1401?version=1
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Feed switch 2016-01 Solbergstranda gut microbiota composition.xlsx
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Created: 15th Jun 2016 at 12:48
Last updated: 20th Aug 2021 at 10:18
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Version 1 (earliest) Created 15th Jun 2016 at 12:48 by Inga Leena Angell
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