SUMMARY:
Computational metabolic models typically encode for graphs of species, reactions, and enzymes. Comparing genome-scale models through topological analysis of multipartite graphs is challenging. However, in many practical cases it is not necessary to compare the full networks. The GEMtractor is a web-based tool to trim models encoded in SBML. It can be used to extract subnetworks, for example focusing on reaction- and enzyme-centric views into the model.
AVAILABILITY AND IMPLEMENTATION: The GEMtractor is licensed under the terms of GPLv3 and developed at github.com/binfalse/GEMtractor - a public version is available at sbi.uni-rostock.de/gemtractor.
SEEK ID: https://fairdomhub.org/publications/459
DOI: 10.1093/bioinformatics/btaa068
Projects: BESTER
Publication type: Journal
Journal: Bioinformatics
Editors: Jinbo Xu
Citation: Bioinformatics
Date Published: 31st Jan 2020
Registered Mode: by DOI
Views: 1598
Created: 1st Apr 2020 at 13:07
Last updated: 8th Dec 2022 at 17:26
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