Organisms

Created At
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86 Organisms found
SARS Coronavirus
SysVirDrug

Taxonomy URI: http://purl.bioontology.org/ontology/SNOMEDCT/415360003

Dengue virus
SysVirDrug

Taxonomy URI: http://purl.bioontology.org/ontology/NCBITAXON/12637

Hepatitis C virus
SysVirDrug

Taxonomy URI: http://purl.bioontology.org/ontology/NCBITAXON/11103

Synonyms: post-transfusion hepatitis non A non B virus, human hepatitis C virus, hepatitis C virus HCV, human hepatitis virus C HCV, human hepatitis C virus HCV

Leptospirillum ferriphilum
SysMetEx

Taxonomy URI: http://purl.bioontology.org/ontology/NCBITAXON/178606

Sulfobacillus thermosulfidooxidans
SysMetEx, EraCoBiotech 2 nd call proposal preparation

Taxonomy URI: http://purl.bioontology.org/ontology/NCBITAXON/28034

Acidithiobacillus caldus
SysMetEx, Kinetics on the move - Workshop 2016

Taxonomy URI: http://purl.bioontology.org/ontology/NCBITAXON/33059

Synonyms: Thiobacillus caldus

Rattus norvegicus
Early Metabolic Injury (LiSyM-EMI - Pillar I), Chronic Liver Disease Progression (LiSyM-DP - Pillar II), Regeneration and Repair in Acute-on-Chronic Liver Failure (LiSyM-ACLF - Pillar III), LiSyM Core Infrastructure and Management (LiSyM-PD), Liver Function Diagnostics (LiSyM-LiFuDi - Pillar IV), Model Guided Pharmacotherapy In Chronic Liver Disease (LiSyM-MGP), Multi-Scale Models for Personalized Liver Function Tests (LiSyM-MM-PLF), The Hedgehog Signalling Pathway (LiSyM-JGMMS), Molecular Steatosis - Imaging & Modeling (LiSyM-MSIM), MESI-STRAT, PoLiMeR - Polymers in the Liver: Metabolism and Regulation

Taxonomy URI: http://purl.bioontology.org/ontology/NCBITAXON/10116

Synonyms: Rattus sp. strain Wistar, brown rat

Mus musculus
iRhythmics, Early Metabolic Injury (LiSyM-EMI - Pillar I), Chronic Liver Disease Progression (LiSyM-DP - Pillar II), Regeneration and Repair in Acute-on-Chronic Liver Failure (LiSyM-ACLF - Pillar III), LiSyM Core Infrastructure and Management (LiSyM-PD), Liver Function Diagnostics (LiSyM-LiFuDi - Pillar IV), Model Guided Pharmacotherapy In Chronic Liver Disease (LiSyM-MGP), Multi-Scale Models for Personalized Liver Function Tests (LiSyM-MM-PLF), The Hedgehog Signalling Pathway (LiSyM-JGMMS), Molecular Steatosis - Imaging & Modeling (LiSyM-MSIM), SBEpo - Systems Biology of Erythropoietin, MS_DILI, MESI-STRAT, PoLiMeR - Polymers in the Liver: Metabolism and Regulation, Working Group Nicole Radde, Biomics Projects

Taxonomy URI: http://purl.bioontology.org/ontology/NCBITAXON/10090

Synonyms: mouse

Homo sapiens
Whole body modelling of glucose metabolism in malaria patients, SysVirDrug, IMOMESIC, iRhythmics, Early Metabolic Injury (LiSyM-EMI - Pillar I), Chronic Liver Disease Progression (LiSyM-DP - Pillar II), Regeneration and Repair in Acute-on-Chronic Liver Failure (LiSyM-ACLF - Pillar III), LiSyM Core Infrastructure and Management (LiSyM-PD), Liver Function Diagnostics (LiSyM-LiFuDi - Pillar IV), Model Guided Pharmacotherapy In Chronic Liver Disease (LiSyM-MGP), Multi-Scale Models for Personalized Liver Function Tests (LiSyM-MM-PLF), The Hedgehog Signalling Pathway (LiSyM-JGMMS), Molecular Steatosis - Imaging & Modeling (LiSyM-MSIM), FAIRDOM user meeting, HUMET Startup, SBEpo - Systems Biology of Erythropoietin, Service to Milano-Bicocca with respect to their ATP-ROS model (Active NOW), Service to University of Lisbon (Portugal) with respect to their CFTR maturation model (Active NOW), Service to LCSB (Luxembourg) with respect to ROS management in Parkinson’s disease and cancer model (Active NOW), Service to URV Tarragona, Spain with respect to their Safety Assessment of Endocrine Disrupting Chemicals model (Active NOW), Service to Universidade Católica Portugues with respect to their Molecular Insight into Autism Spectrum Disorder (ASD) model (Active NOW), Service to Slovenia with respect to their Protease signaling network in neurodegeneration model (Active NOW), Service to University of Duisburg- Essen (Germany): with respect to their The Yin-Yang of Metabolism; Endometatoxicity (YYME) model (Active NOW), Service to Sheffield University (UK): with respect to Mitochondrial perfect adaptation model (Active NOW), Service to Sanquin (Amsterdam): with respect to Modelling of acute and chronic inflammation (Prospective), Service to Munich (Germany): with respect toCharged peptide to charged membrane binding model (Prospective), CausalDB, Colosys, MS_DILI, MESI-STRAT, INCOME, ROS detailed model for MSB manucript, Steroid biosynthesis, DCM, New LiSyM project, PoLiMeR - Polymers in the Liver: Metabolism and Regulation, NAD COMPARTMENTATION, Bergen(Ziegler lab) project AF-NADase, NAMPT affinity, Stress granules, NAD phylogeny, CF transcriptome, miRiAD - exploring the role of microRNAs in T cell function and anti-viral defence, ComPASs - Common Pathways in Amyotrophic Lateral Sclerosis (ALS) and Spinal Muscular Atrophy (SMA), LungCARD - Blood test for clinical therapy guidance of non-small cell lung cancer patients, UnCentre - Unlocking satellite DNA and centromere structure in vertebrate chromosomes, Toggle switch, Biomics Projects, Mechanism based modeling viral disease ( COVID-19 ) dynamics in human population, COVID-19 Disease Map, COVID-19 related studies and tools in Germany, nfdi4health - German National Research Data Infrastructure for Personal Health Data, Reduce Complexity (RCO) reconstruction, Backup Transcriptomic data, C19DM-Neo4j, SNAPPER: Synergistic Neurotoxicology APP for Environmental Regulation, Consensus Hallmark Annotation, C19DM - Macrophage logical model, Covid-19 Interferon pathway modelling and analysis, CoVIDD - Coronavirus interactions in drug discovery - optimization and implementation, Mass spectrometry proteomics for biomarker discovery, Molecular characterization and angiogenic properties of extracellular vesicles in healthy and preeclamptic amniotic fluid, Investigation of the activity of antisense oligonucleotides targeting multiple genes, DeCipher

Taxonomy URI: http://purl.bioontology.org/ontology/NCBITAXON/9606

Synonyms: man

Plasmodium falciparum
Whole body modelling of glucose metabolism in malaria patients, Biomics Projects

Taxonomy URI: http://purl.bioontology.org/ontology/NCBITAXON/5833

Synonyms: Plasmodium (Laverania) falciparum

Escherichia coli K-12
SUMO, TRALAMINOL, Escherichia coli chemical product tolerance, Biomics Projects

Taxonomy URI: http://purl.obolibrary.org/obo/NCBITaxon_83333

Synonyms: Escherichia coli K12

Lactobacillus plantarum

Taxonomy URI: http://purl.obolibrary.org/obo/NCBITaxon_1590

Synonyms: Lactobacillus arizonae

Streptococcus pneumoniae
Noisy-Strep

Taxonomy URI: http://purl.obolibrary.org/obo/NCBITaxon_1313

Trypanosoma brucei
SilicoTryp, NMTrypI - New Medicines for Trypanosomatidic Infections

Taxonomy URI: http://purl.obolibrary.org/obo/NCBITaxon_5691

Streptococcus pyogenes
SysMO-LAB

Taxonomy URI: http://purl.obolibrary.org/obo/NCBITaxon_1314

Clostridium acetobutylicum
COSMIC, Ultreia

Taxonomy URI: http://purl.obolibrary.org/obo/NCBITaxon_1488

Streptomyces coelicolor
STREAM, SYSTERACT, INBioPharm

Taxonomy URI: http://purl.obolibrary.org/obo/NCBITaxon_1902

Sulfolobus solfataricus
SulfoSys, SulfoSys - Biotec

Taxonomy URI: http://purl.obolibrary.org/obo/NCBITaxon_2287

Enterococcus faecalis
SysMO-LAB

Taxonomy URI: http://purl.obolibrary.org/obo/NCBITaxon_1351

Escherichia coli
SUMO, KOSMOBAC, Manchester Institute for Biotechnology, LEANPROT, Millar group, HOTSOLUTE, SynBio4Flav, Toggle switch, CEPOPA - Development of sustainable chemoenzymatic processes for optically pure amines from alcohols or alkynes

Taxonomy URI: http://purl.obolibrary.org/obo/NCBITaxon_562

Saccharomyces cerevisiae
MOSES, TRANSLUCENT, WineSys, ICYSB 2015 - International Practical Course in Systems Biology, XyloCut, ROBUSTYEAST, SynBio4Flav, Yeast glycolytic oscillations, CoolWine

Taxonomy URI: http://purl.obolibrary.org/obo/NCBITaxon_4932

Synonyms: yeast, lager beer yeast, brewer's yeast, baker's yeast

Bacillus subtilis
BaCell-SysMO, Kinetics on the move - Workshop 2016

Taxonomy URI: http://purl.obolibrary.org/obo/NCBITaxon_1423

Lactococcus lactis
SysMO-LAB

Taxonomy URI: http://purl.obolibrary.org/obo/NCBITaxon_1358

Pseudomonas fluorescens
SCaRAB, EmPowerPutida

Taxonomy URI: http://purl.obolibrary.org/obo/NCBITaxon_294

Lactic Acid Bacteria
SysMO-LAB

Taxonomy URI: Not specified

Pseudomonas putida
PSYSMO, EmPowerPutida, SynBio4Flav, Acetyl-coa production in Pseudomonas putida

Taxonomy URI: http://purl.obolibrary.org/obo/NCBITaxon_303

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