Assays
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To estimate the relative level of plasma-membrane potential in the wild type, single trk1 and trk2 or double trk1 trk2 mutants, the diSC3(3) fluorescent probe was added to cells grown under various conditions and the levels of cell fluorescence were monitored.
Submitter: Falko Krause
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: TRK1,2 Transport Systems of Saccharomyces cerev...
Is protein content of trk1,2 mutants affected? Determination of proteins in wild type and TRK mutants
Submitter: Falko Krause
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: TRK1,2 Transport Systems of Saccharomyces cerev...
Is internal potassium affected by mutations in the Trk1,2 system? Under which conditions? Potassium measurements in wild type and TRK mutants grown and/or incubated under several external conditions.
Submitter: Falko Krause
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: TRK1,2 Transport Systems of Saccharomyces cerev...
The current-voltage relation for Trk1,2 will be determined according to the conditions of Kuroda et al.
Submitter: Falko Krause
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: TRK1,2 Transport Systems of Saccharomyces cerev...
Study: Current-voltage relation
Submitter: Falko Krause
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: TRK1,2 Transport Systems of Saccharomyces cerev...
Study: Current-voltage relation
2D Gels in wild type and mutants grown or incubated under several conditions: starvation, potassium limiting or different growth phases.
Submitter: Falko Krause
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: TRK1,2 Transport Systems of Saccharomyces cerev...
Study: Proteomic analysis
The potassium influx after the addition of a certain amount of KCl to a potassium free medium, followed by the injection of glucose will be measured by using the MIFE and FLISE technique. This reveals a time course of potassium. Also the external potassium concentrations will be measured.
Submitter: Falko Krause
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Potassium uptake in Saccharomyces cerevisiae
In parallel with the potassium influx the efflux of protons is monitored by measuring the external proton concentration changes with MIFE or FLISE.
Submitter: Falko Krause
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Potassium uptake in Saccharomyces cerevisiae
Further fluxes (ammonium, chloride, calcium) will be measured dependent on the capacities of the MIFE/FLISE technique.
Submitter: Falko Krause
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Potassium uptake in Saccharomyces cerevisiae
The external potassium changes will be monitored by the MIFE and FLISE technique. This allows an estimation of internal potassium changes by determining an initial concentration.
Submitter: Falko Krause
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Potassium uptake in Saccharomyces cerevisiae
The external pH changes will be monitored by the MIFE and FLISE technique. This allows an estimation of internal pH changes by determining an initial pH. pH changes will be also determined by using green fluorescent protein dyes. Relating the proton efflux and the change of internal pH allows an estimate of the proton buffering capacity.
Submitter: Falko Krause
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Potassium uptake in Saccharomyces cerevisiae
The current-voltage relation for Trk1,2 will be determined for various external potassium concentrations.
Submitter: Falko Krause
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: NHA1 Transport System in Saccharomyces cerevisiae
Study: Current-voltage relations
Current- voltage relations for will be determined for various internal potassium concentrations.
Submitter: Falko Krause
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: NHA1 Transport System in Saccharomyces cerevisiae
Study: Current-voltage relations
We will compare two different procedures to extract ATP from yeast cells: Standard kit procedure (hot Tris/EDTA) and Serrano procedure (cold perchloric acid). In addition we have tested different condition as it turned out that some are important.
Submitter: Walter Glaser
Assay type: Metabolomics
Technology type: Imaging
Investigation: Effect of Benzoic Acid on ATP Levels
Submitter: Walter Glaser
Assay type: Metabolomics
Technology type: Imaging
Investigation: Effect of Benzoic Acid on ATP Levels
Submitter: Walter Glaser
Assay type: Metabolomics
Technology type: Technology Type
Investigation: Effect of Benzoic Acid on ATP Levels
Submitter: Walter Glaser
Assay type: Metabolomics
Technology type: Technology Type
Investigation: Effect of Benzoic Acid on ATP Levels
Submitter: Praveen kumar Sappa
Assay type: Transcriptomics
Technology type: Custom Array
Investigation: The transition from growing to non-growing Baci...
Measurement of intra- and extra-cellular metabolome.
Submitter: Ulf Liebal
Assay type: Metabolite Profiling
Technology type: Liquid Chromatography-tandom Mass Spectrometry
Investigation: The transition from growing to non-growing Baci...
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Submitter: Holger Janssen
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Systems Biology of Clostridium acetobutylicum -...
Submitter: Sandra Maass
Assay type: Proteomics
Technology type: 2D Gel Electrophoresis
Investigation: The transition from growing to non-growing Baci...
Submitter: Sandra Maass
Assay type: Protein Expression Profiling
Technology type: Mass Spectrometry
Investigation: The transition from growing to non-growing Baci...
Submitter: Sandra Maass
Assay type: Proteomics
Technology type: Mass Spectrometry
Investigation: The transition from growing to non-growing Baci...
The pilot experiment was conducted in order to create SOPs and to gain insight in transcriptome of cells grown at 70 and 80C
Submitter: Pawel Sierocinski
Assay type: Transcriptional Profiling
Technology type: Microarray
Investigation: Analysis of Central Carbon Metabolism of Sulfol...
Samples obtained form the central fermentation facility of Sulfosys have been compared using iTRAQ (isobaric tag for relative and absolute quantification). A pilot experiment resulted in creation of SOP and initial data on cells grown at 70 and 80C
Submitter: Pawel Sierocinski
Assay type: Protein Expression Profiling
Technology type: Isotope Ratio Mass Spectrometry
Investigation: Analysis of Central Carbon Metabolism of Sulfol...
In order to get uniform data from all geographically separated partners in a consortium, central fermentation facility has been set-up. Based on empirical data, standard procedures for growing S. solfataricus cells have been developed.
Submitter: Pawel Sierocinski
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Analysis of Central Carbon Metabolism of Sulfol...
Based on initial cell material, series of SOPs connected with assays of enzymes involved in Central Carbon Metabolism of S. solfataricus have been developed.
Submitter: Pawel Sierocinski
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Analysis of Central Carbon Metabolism of Sulfol...
Pilot experiment concerning metabolome of S. solfataricus was conducted in order to acquire SOPs regarding the technique and gain insight on differences in metabolite concentrations at 70 and 80C
Submitter: Pawel Sierocinski
Assay type: Metabolomics
Technology type: Gas Chromatography Mass Spectrometry
Investigation: Analysis of Central Carbon Metabolism of Sulfol...
Some generic examples of transcriptomics templates that conform to the MAGE-TAB specification. These templates were created and modified from templates produced by ArrayExpress and GEO. These templates are generic and non-specific for any particular array platform.
Submitter: Katy Wolstencroft
Assay type: Transcriptomics
Technology type: Microarray
Investigation: Creating data sheet template for 'omics data
Some examples of proteomics templates for Mass Spectrometry data that conform to the MIAPE specification
Submitter: Katy Wolstencroft
Assay type: Proteomics
Technology type: Mass Spectrometry
Investigation: Creating data sheet template for 'omics data