ExploreAn example of a blank data sheet for Mass spectrometry data. This is not SysMO specific, but it is an example of MIAPE compliant data.
The shreadsheet contains macros to help you annotate your data with terms from controlled vocabularies and ontologies
SEEK ID: https://fairdomhub.org/data_files/10?version=1
Filename:
PRIDE_template_empty.xls
Format: Spreadsheet
Size: 2.79 MB
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Contributor and Creators
Views: 4911 Downloads: 165
Created: 26th Oct 2009 at 15:48
Last updated: 11th Dec 2018 at 12:23
Last used: 20th Oct 2019 at 20:56
AttributionsNone
Related items
Projects: SysMO DB, HUMET Startup, FAIRDOM
Institutions: University of Leiden
https://orcid.org/0000-0002-1279-5133
I am an Assistant Professor at Leiden University in the Leiden Institute of Advanced Computer Science. I am a bioinformatician and my research interests are in data integration. I use scientific workflows and semantic web technologies to integrate and analyse data in systems biology and functional genomics.
The main objectives of SysMO-DB are to: facilitate the web-based exchange of data between research groups within- and inter- consortia, and to provide an integrated platform for the dissemination of the results of the SysMO projects to the scientific community. We aim to devise a progressive and scalable solution to the data management needs of the SysMO initiative, that:
* facilitates and maximises the potential for data exchange between SysMO research groups;
* maximises the ‘shelf life’ and
...
Programme: SysMO
Public web page: http://www.sysmo-db.org/
Data integration is an essential part of Systems Biology. Scientists need to combine different sources of information in order to model biological systems, and relate those models to available experimental data for validation. Currently, only a small fraction of the data and models produced during Systems Biology investigations are deposited for reuse by the community, and only a smaller fraction of that data is standards compliant, semantic content.
By embedding semantic technologies into familiar
...
Snapshots: Snapshot 1, Snapshot 2
Here you will find guidelines for creating MIAPE compliant proteomics data files as well as examples and links to online tools and resources
Person responsible: Katy Wolstencroft
Snapshots: No snapshots
Some examples of proteomics templates for Mass Spectrometry data that conform to the MIAPE specification
Contributor: Katy Wolstencroft
Assay type: Proteomics
Technology type: Mass Spectrometry
Snapshots: No snapshots
