General Bioinformatics
SEEK ID: https://fairdomhub.org/people/93
Location: Austria
ORCID: Not specified
Joined: 17th Feb 2009
Expertise: Bioinformatics
Tools: Data Management, Computational and theoretical biology, Transcriptomics, Perl, Microarray analysis, R, PHP, SQL
Related items
- Programmes (1)
- Projects (1)
- Institutions (1)
- Assays (4)
- Strains (2)
- Data files (0+1)
- SOPs (4)
- Publications (2)
SysMO is a European transnational funding and research initiative on "Systems Biology of Microorganisms".
The goal pursued by SysMO was to record and describe the dynamic molecular processes going on in unicellular microorganisms in a comprehensive way and to present these processes in the form of computerized mathematical models.
Systems biology will raise biomedical and biotechnological research to a new quality level and contribute markedly to progress in understanding. Pooling European research ...
Projects: BaCell-SysMO, COSMIC, SUMO, KOSMOBAC, SysMO-LAB, PSYSMO, SCaRAB, MOSES, TRANSLUCENT, STREAM, SulfoSys, SysMO DB, SysMO Funders, SilicoTryp, Noisy-Strep
Web page: http://sysmo.net/
MOSES (Micro Organism Systems biology: Energy and Saccharomyces cerevisiae) develops a new Systems Biology approach, which is called 'domino systems biology'. It uses this to unravel the role of cellular free energy ('ATP') in the control and regulation of cell function. MOSES operates though continuous iterations between partner groups through a new systems-biology driven data-management workflow. MOSES also tries to serve as a substrate for three or more other SYSMO programs.
Programme: SysMO
Public web page: http://www.moses.sys-bio.net/
Organisms: Saccharomyces cerevisiae
We will compare two different procedures to extract ATP from yeast cells: Standard kit procedure (hot Tris/EDTA) and Serrano procedure (cold perchloric acid). In addition we have tested different condition as it turned out that some are important.
Submitter: Walter Glaser
Assay type: Metabolomics
Technology type: Imaging
Investigation: Effect of Benzoic Acid on ATP Levels
Organisms: Saccharomyces cerevisiae : YSBN2 diploid (wild-type / wild-type)
SOPs: ATP determination with ROCHE kit “ATP Biolumin...
Data files: No Data files
Snapshots: No snapshots
Submitter: Walter Glaser
Assay type: Metabolomics
Technology type: Imaging
Investigation: Effect of Benzoic Acid on ATP Levels
Organisms: Saccharomyces cerevisiae : YSBN2 diploid (wild-type / wild-type)
SOPs: ATP determination with ROCHE kit “ATP Biolumin...
Data files: No Data files
Snapshots: No snapshots
Submitter: Walter Glaser
Assay type: Metabolomics
Technology type: Technology Type
Investigation: Effect of Benzoic Acid on ATP Levels
Organisms: Saccharomyces cerevisiae : YSBN2 diploid (wild-type / wild-type)
SOPs: ATP determination with ROCHE kit “ATP Biolumin...
Data files: No Data files
Snapshots: No snapshots
Submitter: Walter Glaser
Assay type: Metabolomics
Technology type: Technology Type
Investigation: Effect of Benzoic Acid on ATP Levels
Organisms: Saccharomyces cerevisiae : YSBN2 diploid (wild-type / wild-type)
SOPs: ATP determination with ROCHE kit “ATP Biolumin...
Data files: No Data files
Snapshots: No snapshots
Submitter: Walter Glaser
Provider Name: Not specified
Provider's strain ID: Not specified
Organism: Saccharomyces cerevisiae
Genotypes: wild-type
Phenotypes: wild-type
Comment: Not specified
Submitter: Walter Glaser
Provider Name: Not specified
Provider's strain ID: Not specified
Organism: Saccharomyces cerevisiae
Genotypes: wild-type
Phenotypes: wild-type
Comment: Not specified
Assay methodologies for individual glycolytic isoenzymes from the Mendes Group, University of Manchester, UK
Creator: Hanan Messiha
Submitter: Walter Glaser
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
This is the general protocol for the glycolytic enzyme measurements. Detailed Information for each Enzyme can be found in the SOP: Assays for measuring the activities of the individual glycolytic isoenzymes of Saccharomyces cerevisiae
Creator: Hanan Messiha
Submitter: Walter Glaser
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
The kit is used for the quantitative detection of ATP in yeast cells by luciferase driven bioluminescence. ATP extraction is done by boiling cells in TE buffer.
Creators: Martin Valachovic, Cornelia Klein
Submitter: Walter Glaser
Investigations: Effect of Benzoic Acid on ATP Levels
Studies: ATP levels under 10 mM benzoic acid stress, ATP levels under 30 mM and 50 mM benzoic acid s..., Test different ATP extraction protocols and con...
Assays: ATP measurement under 10mM benzoic acid stress, ATP measurement under 30mM benzoic acid stress, ATP measurement under 50mM benzoic acid stress, Compare ATP extraction methods
This protocol is designed to prepare sufficient amounts of high-quality total RNA from the yeast saccharomyces cerevisiae grown in liquid culture for analysis on microarrays.
Creators: Walter Glaser, Christa Gregori
Submitter: Walter Glaser
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Abstract (Expand)
Authors: Felix Bonowski, , , Jinda Holzwarth, Igor Kitanovic, Van Ngoc Bui, Elke Lederer,
Date Published: 23rd Dec 2009
Publication Type: Not specified
PubMed ID: 20502716
Citation:
Abstract (Expand)
Authors: , Catherine Winder, , Evangelos Simeonidis, Malgorzata Adamczyk, , Frank J Bruggeman, Warwick Dunn
Date Published: 6th Nov 2009
Publication Type: Not specified
PubMed ID: 19913018
Citation: