A.GEX-260519ENG-2

UID : A.GEX-260519ENG-2

File_PrimaryData : MgmtDouble_DESeq2_normed2.txt

Link_PrimaryData : https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE332646

Name : Bulk RNA-seq DESeq2-normalized counts, Mgmt cohort

Scientist : Lee Pribyl

Notes : Mgmt cohort DESeq2-normalized expression matrix; covers 96 manuscript D.SEQ samples; matrix may include additional non-manuscript samples from Norah's broader analysis; Parent list corrected 2026-05-19: swapped D.SEQ-260514ENG-214 (excluded mouse 19-193) for D.SEQ-260514ENG-135 (Mgmt genotype, actual matrix member)

Protocol : https://fairdomhub.org/sops/910

Parent : D.SEQ-260514ENG-10;D.SEQ-260514ENG-11;D.SEQ-260514ENG-12;D.SEQ-260514ENG-125;D.SEQ-260514ENG-126;D.SEQ-260514ENG-127;D.SEQ-260514ENG-128;D.SEQ-260514ENG-129;D.SEQ-260514ENG-13;D.SEQ-260514ENG-130;D.SEQ-260514ENG-131;D.SEQ-260514ENG-132;D.SEQ-260514ENG-133;D.SEQ-260514ENG-134;D.SEQ-260514ENG-136;D.SEQ-260514ENG-137;D.SEQ-260514ENG-138;D.SEQ-260514ENG-139;D.SEQ-260514ENG-14;D.SEQ-260514ENG-140;D.SEQ-260514ENG-141;D.SEQ-260514ENG-142;D.SEQ-260514ENG-143;D.SEQ-260514ENG-144;D.SEQ-260514ENG-145;D.SEQ-260514ENG-146;D.SEQ-260514ENG-147;D.SEQ-260514ENG-148;D.SEQ-260514ENG-149;D.SEQ-260514ENG-15;D.SEQ-260514ENG-150;D.SEQ-260514ENG-151;D.SEQ-260514ENG-152;D.SEQ-260514ENG-153;D.SEQ-260514ENG-154;D.SEQ-260514ENG-155;D.SEQ-260514ENG-156;D.SEQ-260514ENG-157;D.SEQ-260514ENG-158;D.SEQ-260514ENG-159;D.SEQ-260514ENG-16;D.SEQ-260514ENG-160;D.SEQ-260514ENG-161;D.SEQ-260514ENG-162;D.SEQ-260514ENG-163;D.SEQ-260514ENG-164;D.SEQ-260514ENG-165;D.SEQ-260514ENG-166;D.SEQ-260514ENG-17;D.SEQ-260514ENG-18;D.SEQ-260514ENG-185;D.SEQ-260514ENG-186;D.SEQ-260514ENG-187;D.SEQ-260514ENG-188;D.SEQ-260514ENG-189;D.SEQ-260514ENG-19;D.SEQ-260514ENG-190;D.SEQ-260514ENG-191;D.SEQ-260514ENG-20;D.SEQ-260514ENG-21;D.SEQ-260514ENG-213;D.SEQ-260514ENG-135;D.SEQ-260514ENG-22;D.SEQ-260514ENG-23;D.SEQ-260514ENG-24;D.SEQ-260514ENG-25;D.SEQ-260514ENG-26;D.SEQ-260514ENG-27;D.SEQ-260514ENG-28;D.SEQ-260514ENG-29;D.SEQ-260514ENG-30;D.SEQ-260514ENG-31;D.SEQ-260514ENG-40;D.SEQ-260514ENG-41;D.SEQ-260514ENG-42;D.SEQ-260514ENG-43;D.SEQ-260514ENG-44;D.SEQ-260514ENG-45;D.SEQ-260514ENG-46;D.SEQ-260514ENG-47;D.SEQ-260514ENG-48;D.SEQ-260514ENG-49;D.SEQ-260514ENG-50;D.SEQ-260514ENG-51;D.SEQ-260514ENG-52;D.SEQ-260514ENG-53;D.SEQ-260514ENG-54;D.SEQ-260514ENG-55;D.SEQ-260514ENG-56;D.SEQ-260514ENG-57;D.SEQ-260514ENG-58;D.SEQ-260514ENG-59;D.SEQ-260514ENG-60;D.SEQ-260514ENG-61;D.SEQ-260514ENG-62;D.SEQ-260514ENG-9

Checksum_PrimaryType : sha256

Software : R / Bioconductor

Pipeline : DESeq2

Aligner : STAR

ReferenceGenome : GRCm38