Studies
What is a Study?
Unpublished
DOI: none
Submitter: Daniel Thedie
Investigation: Hibberd Victoria
Assays: cca1 lhy Long #1 CAB2 marker, cca1 lhy Long #1 CCA1 marker, cca1 lhy Long #1 CCR2 marker
Unpublished
DOI: none
Unpublished
DOI: none
Submitter: Daniel Thedie
Investigation: Kim, W.Y.
Assays: Kim et al. (2005); CO, FT; 16L:8D; WT, elf3, Kim2007 ZTL in blue light
Unpublished
DOI: none
Unpublished
DOI: none
Submitter: Daniel Thedie
Investigation: Ito, S.
Assays: Ito 2007 wt LD PRR9 protein, Ito et al. (2008); GI, FKF1, CDF1, CO, FT; 16L:8D, 10L:14D; WT, toc1, pr...
Unpublished
DOI: none
Submitter: Daniel Thedie
Investigation: Niwa Y.
Assays: Niwa et al. (2007); GI, FKF1, CDF1, CO, FT mRNA; 10L:14D; WT, cca1;lhy, ...
Unpublished
DOI: none
Unpublished
DOI: none
Submitter: Daniel Thedie
Investigation: Nakamichi Norihito
Assays: Nakamichi et al. (2007); FKF1, CDF1, CO, FT; 16L:8D, 10L:14D; WT, prr7;5..., Nakamichi_2010_draft: PRR9,PRR7,PRR5
Unpublished
DOI: none
Unpublished
DOI: none
Unpublished
DOI: none
Submitter: Daniel Thedie
Investigation: Hall A
Assays: The TIME FOR COFFEE Gene Maintains the Amplitude and Timing of Arabidops...
Unpublished
DOI: none
Submitter: Daniel Thedie
Investigation: Kieron D Edwards
Assays: FLOWERING LOCUS C Controls Temperature Response of the Arabidopsis Clock
Unpublished
DOI: none
Unpublished
DOI: none
Unpublished
DOI: none
Submitter: Daniel Thedie
Investigation: Gould Peter
Assays: 12C BL-cryptochrome paper-rep1, 12C BL-cryptochrome paper-rep2, 12C BL-cryptochrome paper-rep3, 12C RBL-cryptochrome paper-rep1, 12C RBL-cryptochrome paper-rep2, 12C RBL-cryptochrome paper-rep3, 12C RL-cryptochrome paper-rep1, 12C RL-cryptochrome paper-rep2, 12C RL-cryptochrome paper-rep3, 12C RL-cryptochrome paper-rep4, 17C BL-cryptochrome paper-rep1, 17C BL-cryptochrome paper-rep2, 17C BL-cryptochrome paper-rep3, 17C RBL-cryptochrome paper-rep1, 17C RBL-cryptochrome paper-rep2, 17C RBL-cryptochrome paper-rep3, 17C RL-cryptochrome paper-rep1, 17C RL-cryptochrome paper-rep2, 17C RL-cryptochrome paper-rep3, 17C RL-cryptochrome paper-rep4, 27C BL-cryptochrome paper-rep1, 27C BL-cryptochrome paper-rep2, 27C BL-cryptochrome paper-rep3, 27C RBL-cryptochrome paper-rep1, 27C RBL-cryptochrome paper-rep2, 27C RBL-cryptochrome paper-rep3, 27C RL-cryptochrome paper-rep1, 27C RL-cryptochrome paper-rep2, 27C RL-cryptochrome paper-rep3, 27C RL-cryptochrome paper-rep4, LUC CAB CCR2 MUT BL30 2LD to 5LL 17C 05/10/11
Unpublished
DOI: none
Unpublished
DOI: none
Submitter: Daniel Thedie
Investigation: Thomson Adrian
Assays: AT0005 4x SD-3xLL, AT0006 4x LD-3xLL, AT0007 4x 03:21-LL, AT0009 4x 9:15-LL, AT0010 4x 15:9-LL, AT0011 4x 12:12-LL, AT0028: 4x 3:21-LL, AT0030: 4x 9:15-LL, AT0032: 4x15:9-LL, AT0033: 4x18:6-LL, AT0039: 6:18 then DD, AT0040: 4x 9:15-DD, AT0045: 4x15:9-DD, AT0046: 4x18:6-DD, AT0053: 4x3:21-LL, AT0055: 4x9:15-LL, AT0057: 4x12:12-LL, AT0059: 4x15:09-LL, AT0061: 4x18:6-LL, AT0062: 4x6:18-LL, AT0064: 4x3:21-LL, AT0066: 4x6:18-LL, AT0068: 4x3:21-DD, AT0070: 4x6:18-DD, AT0072: 4x9:15-DD, AT0073: 4x12:12-DD, AT0074: 4x15:9-DD, AT0075: 4x18:6-DD, AT0077: 4x3:21-DD, AT0079: 4x12:12-DD, AT0091: 4x12:12-LL
Unpublished
DOI: none
Submitter: Daniel Thedie
Investigation: Wenden Benedicte
Assays: CCA1 and CCR2 markers in elf4 mutant under Far Red light, Clock genes under Far Red light - 3, Clock genes under Far Red light - 5, Clock genes under Far Red light - 6, Wenden_qPCR_clock_cFR, WT and elf4, Wenden_qPCR_clock_cFR, WT and phyA
Unpublished
DOI: none
Submitter: Daniel Thedie
Investigation: Munoz Felipe
Assays: Analysis of Control Strains Neurospora crassa, Carbon Source, Controls, Entrainment Control Analysis
Changing planetary rotation rescues the biological clock mutant lhy cca1 of Arabidopsis thaliana
Millar et al. (2015)
DOI: 10.1101/034629
Submitter: Daniel Thedie
Investigation: Millar Andrew
Assays: 030413H3: 12B-12Dx4 BB3, 060213H3: 12B-12Dx4 BBx3, 060313H1: 5L15Dx4 LLx3 (T-20), 060313H2: 12F-12Dx4 FFx3, 130212H1: 5L15Dx4 LLx3 (T-20), 130213H3: 12R-12Dx4 RRx3, 130313H1: 14L14D x 4 LL x 3 (T-28), 130313H2: 12F-12Dx4 FFx3, 200213H1: 15L5D x4 LL x3 (T-20), 200213H3: 12B-12Dx4 BB3, 200313H2: 7L 21Dx4 LLx3 (T-28), 200313H3: 12L-12Dx4 LLx3, 270213H1: 10L10Dx4 LLx3 (T-20), 270213H3: 12R-12Dx4 RRx3, 270313H1: 21L 7Dx4 LLx3 (T-28), 270313H3: 12L-12Dx4 LLx3, 290313H2: 15L 5Dx4 LLx3, AT0043: 4x 12:12-DD, AT0048 4x 18:6-DD, AT0078: 4x6:18-DD, AT0080: 4x18:6-DD
Spontaneous spatiotemporal waves of gene expression from biological clocks in the leaf
Wenden et al. (2012)
DOI: 10.1073/pnas.1118814109
Submitter: Daniel Thedie
Investigation: Wenden Benedicte
Assays: BW-detached_LD-LL_#03, BW-detached_LD-LL_#06, BW-detached_LL-LL_#14, BW-detached_LL-LL_#16, BW-detached_LL-LL_#20, BW-intact_LD-LL_#23, BW-intact_LL-LD_#31, BW-intact_LL-LL_#37, BW-intact_LL-LL_#46, BW-intact_LL-LL_#56, BW-intact_LL-LL_#58
Light and circadian regulation of clock components aids flexible responses to environmental signals
Dixon et al. (2014)
DOI: 10.1111/nph.12853
Quantitative analysis of regulatory flexibility under changing environmental conditions
Edwards et al. (2010)
DOI: 10.1038/msb.2010.81
Submitter: Daniel Thedie
Investigation: Kieron D Edwards
Assays: Edwards et al. (2010); WT in different light conditions.
The Arabidopsis Framework Model version 2 predicts the organism-level effects of circadian clock gene mis-regulation
Chew et al. (2022)
DOI: 10.1093/insilicoplants/diac010
Submitter: Daniel Thedie
Investigation: Chew Yin Hoon
Photoperiod-dependent changes in the phase of core clock transcripts and global transcriptional outputs at dawn and dusk in Arabidopsis
Flis et al. (2016)
DOI: 10.1111/pce.12754
Submitter: Daniel Thedie
Investigation: Flis Anna
Assays: Flis et al. TiMet clock gene comparison across photoperiods
Defining the robust behaviour of the plant clock gene circuit with absolute RNA timeseries and open infrastructure
Flis et al. (2015)
DOI: 10.1098/rsob.150042
Submitter: Daniel Thedie
Investigation: Flis Anna
Assays: Clock gene RNAs under RD-RR in clock mutants, expt 1, Clock gene RNAs under RD-RR in clock mutants, expt 2, Clock gene RNAs under RD-RR in clock mutants, expt 3, Clock gene RNAs under RD-RR in clock mutants, expt 4, McWatters A.t. Col-0 WT clock RNA timeseries, Q-PCR LD (12:12) 17C CAB2, Q-PCR LD (12:12) 17C CCA1, Q-PCR LD (12:12) 17C ELF3, Q-PCR LD (12:12) 17C ELF4, Q-PCR LD (12:12) 17C GI, Q-PCR LD (12:12) 17C LHY, Q-PCR LD (12:12) 17C LUX, Q-PCR LD (12:12) 17C PRR5, Q-PCR LD (12:12) 17C PRR7, Q-PCR LD (12:12) 17C PRR9, Q-PCR LD (12:12) 17C TOC1, TiMet WP1.1 WS seedling vs rosette, TiMet WP1.1 qRT-PCR LD to LL and LD, TiMet WP1.1 qRT-PCR elf3 LD
