Wenden Benedicte
Actions 
Order Studies
Collection of experiments created by Wenden Benedicte on the original BioDare and automatically transferred to FAIRDOM Hub.
SEEK ID: https://fairdomhub.org/investigations/800
Projects: BioDare1
Investigation position:
Export PNG
Download
Creators and Submitter
Views: 50
Created: 18th Jun 2026 at 13:01
TagsThis item has not yet been tagged.
Related items
https://orcid.org/0000-0002-1352-7245Research Software Engineer in the Biological Research Data Management team (BioRDM) at the University of Edinburgh.
The Centre for Engineering Biology is the University of Edinburgh's research organisation in interdisciplinary, Synthetic and Systems Biology, founded in 2023 as the successor to SynthSys, itself founded in 2012 as the successor to the Centre for Systems Biology at Edinburgh (CSBE). CSBE was newly founded in 2007. The Centre for Engineering Biology is a hub organisation that links across multiple, major funding awards, including an Engineering Biology Mission Hub, and EPSRC C-loop.
Projects: Millar group, PHYTOCAL: Phytochrome Control of Resource Allocation and Growth in Arabidopsis and in Brassicaceae crops, TiMet, POP - the Parameter Optimisation Problem, Regulation of flowering time in natural conditions, PlaSMo model repository, BioDare1
Web page: https://biology.ed.ac.uk/centre-engineering-biology
Experiment data previously hosted on the original version of BioDare (biodare.ed.ac.uk).
Programme: Centre for Engineering Biology (prev. SynthSys)
Public web page: Not specified
Unpublished
DOI: none
Submitter: Daniel Thedie
Investigation: Wenden Benedicte
Assays: CCA1 and CCR2 markers in elf4 mutant under Far Red light, Clock genes under Far Red light - 3, Clock genes under Far Red light - 5, Clock genes under Far Red light - 6, Wenden_qPCR_clock_cFR, WT and elf4, Wenden_qPCR_clock_cFR, WT and phyA
Spontaneous spatiotemporal waves of gene expression from biological clocks in the leaf
Wenden et al. (2012)
DOI: 10.1073/pnas.1118814109
Submitter: Daniel Thedie
Investigation: Wenden Benedicte
Assays: BW-detached_LD-LL_#03, BW-detached_LD-LL_#06, BW-detached_LL-LL_#14, BW-detached_LL-LL_#16, BW-detached_LL-LL_#20, BW-intact_LD-LL_#23, BW-intact_LL-LD_#31, BW-intact_LL-LL_#37, BW-intact_LL-LL_#46, BW-intact_LL-LL_#56, BW-intact_LL-LL_#58
BW-detached_LL-LL_#20
| Property | Value |
|---|---|
| BioDare ID | 13394437504756 |
| Author | Benedicte Wenden |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
Detached leaves of CCA1:LUC grown and imaged under constant light. Sample number 20 of Table S1 in the 2012 PNAS paper "Spontaneous spatiotemporal waves of gene expression from biological clocks in the leaf". The paper is attached as a file to sample #03.
Purpose
Testing ...
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Wenden Benedicte
Study: Wenden et al. (2012)
BW-intact_LL-LL_#58
| Property | Value |
|---|---|
| BioDare ID | 13394446996851 |
| Author | Benedicte Wenden |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
Intact leaves of CCA1:LUC grown and imaged under constant light. Sample number 58 of Table S1 in the 2012 PNAS paper "Spontaneous spatiotemporal waves of gene expression from biological clocks in the leaf". The paper is attached as a file to sample #03.
Purpose
Testing ...
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Wenden Benedicte
Study: Wenden et al. (2012)
BW-intact_LD-LL_#23
| Property | Value |
|---|---|
| BioDare ID | 13394434885385 |
| Author | Benedicte Wenden |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
Intact leaves of CCA1:LUC grown under LD and imaged under constant light. Sample number 23 of Table S1 in the 2012 PNAS paper "Spontaneous spatiotemporal waves of gene expression from biological clocks in the leaf". The paper is attached as a file to sample #03.
Purpose
...
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Wenden Benedicte
Study: Wenden et al. (2012)
BW-intact_LL-LD_#31
| Property | Value |
|---|---|
| BioDare ID | 13394443003897 |
| Author | Benedicte Wenden |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
Intact leaves of CCA1:LUC grown under constant light and imaged under LD. Plant number 31 of Table S1 in the 2012 PNAS paper "Spontaneous spatiotemporal waves of gene expression from biological clocks in the leaf". The paper is attached as a file to sample #03.
Purpose
...
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Wenden Benedicte
Study: Wenden et al. (2012)
BW-intact_LL-LL_#37
| Property | Value |
|---|---|
| BioDare ID | 13394444364628 |
| Author | Benedicte Wenden |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
Intact leaves of CCA1:LUC grown and imaged under constant light. Sample number 37 of Table S1 in the 2012 PNAS paper "Spontaneous spatiotemporal waves of gene expression from biological clocks in the leaf". The paper is attached as a file to sample #03.
Purpose
Testing ...
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Wenden Benedicte
Study: Wenden et al. (2012)
BW-intact_LL-LL_#56
| Property | Value |
|---|---|
| BioDare ID | 13394446929060 |
| Author | Benedicte Wenden |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
Intact leaves of CCA1:LUC grown and imaged under constant light. Sample number 56 of Table S1 in the 2012 PNAS paper "Spontaneous spatiotemporal waves of gene expression from biological clocks in the leaf". The paper is attached as a file to sample #03.
Purpose
Testing ...
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Wenden Benedicte
Study: Wenden et al. (2012)
BW-intact_LL-LL_#46
| Property | Value |
|---|---|
| BioDare ID | 13394446784669 |
| Author | Benedicte Wenden |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
Intact leaves of CCA1:LUC grown and imaged under constant light. Sample number 46 of Table S1 in the 2012 PNAS paper "Spontaneous spatiotemporal waves of gene expression from biological clocks in the leaf". The paper is attached as a file to sample #03.
Purpose
Testing ...
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Wenden Benedicte
Study: Wenden et al. (2012)
BW-detached_LD-LL_#03
| Property | Value |
|---|---|
| BioDare ID | 13394379875121 |
| Author | Benedicte Wenden |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
Detached leaves of CCA1:LUC grown in LD and imaged under constant light. Sample number 03 of Table S1 in the 2012 PNAS paper "Spontaneous spatiotemporal waves of gene expression from biological clocks in the leaf". The paper is attached as a file to sample #03.
Purpose
...
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Wenden Benedicte
Study: Wenden et al. (2012)
BW-detached_LL-LL_#16
| Property | Value |
|---|---|
| BioDare ID | 13394383188744 |
| Author | Benedicte Wenden |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
Detached leaves of CCA1:LUC grown and imaged under constant light. Sample number 16 of Table S1 in the 2012 PNAS paper "Spontaneous spatiotemporal waves of gene expression from biological clocks in the leaf". The paper is attached as a file to sample #03.
Purpose
Testing ...
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Wenden Benedicte
Study: Wenden et al. (2012)
BW-detached_LD-LL_#06
| Property | Value |
|---|---|
| BioDare ID | 13394381111502 |
| Author | Benedicte Wenden |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
Detached leaves of CCA1:LUC grown in LD and imaged under constant light. Sample number 06 of Table S1 in the 2012 PNAS paper "Spontaneous spatiotemporal waves of gene expression from biological clocks in the leaf". The paper is attached as a file to sample #03.
Purpose
...
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Wenden Benedicte
Study: Wenden et al. (2012)
BW-detached_LL-LL_#14
| Property | Value |
|---|---|
| BioDare ID | 13394382079593 |
| Author | Benedicte Wenden |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
Detached leaves of CCA1:LUC grown and imaged under constant light. Sample number 14 of Table S1 in the 2012 PNAS paper "Spontaneous spatiotemporal waves of gene expression from biological clocks in the leaf". The paper is attached as a file to sample #03.
Purpose
Testing ...
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Wenden Benedicte
Study: Wenden et al. (2012)
Clock genes under Far Red light - 3
| Property | Value |
|---|---|
| BioDare ID | 12723746109930 |
| Author | Benedicte Wenden |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
Seedlings receive 3hrs of white light to germinate, then are entrained under 12/12 FR/D cycles for 3 days, sprayed, and imaged 24hrs after under 1 FR/D cycle, 3 days of continuous FR and 48h of DD
Purpose
Analysis of the main clock markers under strict FR ...
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Wenden Benedicte
Study: Unpublished
Clock genes under Far Red light - 5
| Property | Value |
|---|---|
| BioDare ID | 12725464084711 |
| Author | Benedicte Wenden |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
Seedlings receive 3hrs of white light to germinate, then are entrained under 12/12 FR/D cycles for 3 days, sprayed, and imaged 24hrs after under 1 FR/D cycle, 3 days of continuous FR and 48h of DD
Purpose
Analysis of the main clock markers in elf4, elf3, gi ...
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Wenden Benedicte
Study: Unpublished
CCA1 and CCR2 markers in elf4 mutant under Far Red light
| Property | Value |
|---|---|
| BioDare ID | 12725469475452 |
| Author | Benedicte Wenden |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
Seedlings receive 3hrs of white light to germinate, then are entrained under 12/12 FR/D cycles for 3 days, sprayed, and imaged 24hrs after under 1 FR/D cycle, 3 days of continuous FR and 48h of DD
Purpose
Analysis of the CCA1 and CCR2 ...
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Wenden Benedicte
Study: Unpublished
Clock genes under Far Red light - 6
| Property | Value |
|---|---|
| BioDare ID | 12730680847492 |
| Author | Benedicte Wenden |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
Seedlings receive 3hrs of white light to germinate, then are entrained under 12/12 FR/D cycles for 3 days, sprayed, and imaged 24hrs after under 1 FR/D cycle, 3 days of continuous FR and 48h of DD
Purpose
Analysis of CCA1 and CCR2 in phyb, elf3-4, elf4-1 and ...
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Wenden Benedicte
Study: Unpublished
Wenden_qPCR_clock_cFR, WT and phyA
| Property | Value |
|---|---|
| BioDare ID | 13395774721132 |
| Author | Benedicte Wenden |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
Literature data from: 'Light inputs shape the Arabidopsis circadian system' by: Benedicte Wenden.
Experiments performed on phyA and Col-0, 22 March to 26 Aug 2009, and on elf4, 8 March through November 2010. Published in Wenden et al. Plant Journal 2011. Curated ...
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Wenden Benedicte
Study: Unpublished
Wenden_qPCR_clock_cFR, WT and elf4
| Property | Value |
|---|---|
| BioDare ID | 13395775064583 |
| Author | Benedicte Wenden |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
Literature data from: 'Light inputs shape the Arabidopsis circadian system' by: Benedicte Wenden.
Experiments performed on phyA and Col-0, 22 March to 26 Aug 2009, and on elf4, 8 March through November 2010. Published in Wenden et al. Plant Journal 2011. Curated ...
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Wenden Benedicte
Study: Unpublished
BW_cFR_qPCR, WT and elf4 data (from BioDare)
Creator: Benedicte Wenden
Submitter: Daniel Thedie
STANDARD_DATAFILE.2 (from BioDare)
Creator: Benedicte Wenden
Submitter: Daniel Thedie
STANDARD_RAWDATAFILE.2 (from BioDare)
Creator: Benedicte Wenden
Submitter: Daniel Thedie
cFR_WT,elf4_qPCR-ForUpload.2 (from BioDare)
Creator: Benedicte Wenden
Submitter: Daniel Thedie
List of samples used in the assay (extracted from original BioDare metadata and converted to csv)
Creator: Benedicte Wenden
Submitter: Daniel Thedie
Original BioDare metadata, converted to json format
Creator: Benedicte Wenden
Submitter: Daniel Thedie
Readme file
Creator: Benedicte Wenden
Submitter: Daniel Thedie
BW_cFR_qPCR, WT and phyA data (from BioDare)
Creator: Benedicte Wenden
Submitter: Daniel Thedie
STANDARD_DATAFILE (from BioDare)
Creator: Benedicte Wenden
Submitter: Daniel Thedie
STANDARD_RAWDATAFILE (from BioDare)
Creator: Benedicte Wenden
Submitter: Daniel Thedie
BW_cFR_qPCR, WT and phyA data for upload (from BioDare)
Creator: Benedicte Wenden
Submitter: Daniel Thedie
List of samples used in the assay (extracted from original BioDare metadata and converted to csv)
Creator: Benedicte Wenden
Submitter: Daniel Thedie
Original BioDare metadata, converted to json format
Creator: Benedicte Wenden
Submitter: Daniel Thedie
Readme file
Creator: Benedicte Wenden
Submitter: Daniel Thedie
FRLuc6RawData (from BioDare)
Creator: Benedicte Wenden
Submitter: Daniel Thedie
FRLuc6RawData (from BioDare)
Creator: Benedicte Wenden
Submitter: Daniel Thedie
STANDARD_DATAFILE (from BioDare)
Creator: Benedicte Wenden
Submitter: Daniel Thedie
FRLuc6RawData.1 (from BioDare)
Creator: Benedicte Wenden
Submitter: Daniel Thedie
List of samples used in the assay (extracted from original BioDare metadata and converted to csv)
Creator: Benedicte Wenden
Submitter: Daniel Thedie
Original BioDare metadata, converted to json format
Creator: Benedicte Wenden
Submitter: Daniel Thedie
Abstract (Expand)
Authors: B. Wenden, D. L. Toner, S. K. Hodge, R. Grima, A. J. Millar
Date Published: 13th Apr 2012
Publication Type: Not specified
