TiMet double dawns
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TiMet double dawns
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Created: 18th Jun 2026 at 14:24
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https://orcid.org/0000-0002-1352-7245Research Software Engineer in the Biological Research Data Management team (BioRDM) at the University of Edinburgh.
The Centre for Engineering Biology is the University of Edinburgh's research organisation in interdisciplinary, Synthetic and Systems Biology, founded in 2023 as the successor to SynthSys, itself founded in 2012 as the successor to the Centre for Systems Biology at Edinburgh (CSBE). CSBE was newly founded in 2007. The Centre for Engineering Biology is a hub organisation that links across multiple, major funding awards, including an Engineering Biology Mission Hub, and EPSRC C-loop.
Projects: Millar group, PHYTOCAL: Phytochrome Control of Resource Allocation and Growth in Arabidopsis and in Brassicaceae crops, TiMet, POP - the Parameter Optimisation Problem, Regulation of flowering time in natural conditions, PlaSMo model repository, BioDare1
Web page: https://biology.ed.ac.uk/centre-engineering-biology
Experiment data previously hosted on the original version of BioDare (biodare.ed.ac.uk).
Programme: Centre for Engineering Biology (prev. SynthSys)
Public web page: Not specified
Collection of experiments created by Millar Andrew on the original BioDare and automatically transferred to FAIRDOM Hub.
Submitter: Daniel Thedie
Studies: Millar et al. (2015), TiMet double dawns, TiMet shady nights
Assays: 010514H1, 010514H2, 030413H3: 12B-12Dx4 BB3, 030714H1, 030714H2, 060213H3: 12B-12Dx4 BBx3, 060313H1: 5L15Dx4 LLx3 (T-20), 060313H2: 12F-12Dx4 FFx3, 070814H1, 070814H2, 080115H1, 080115H2, 100414H1, 100414H2, 130212H1: 5L15Dx4 LLx3 (T-20), 130213H3: 12R-12Dx4 RRx3, 130313H1: 14L14D x 4 LL x 3 (T-28), 130313H2: 12F-12Dx4 FFx3, 140515H1, 140515H2, 140814H1, 140814H2, 190614H1, 190614H2, 200213H1: 15L5D x4 LL x3 (T-20), 200213H3: 12B-12Dx4 BB3, 200313H2: 7L 21Dx4 LLx3 (T-28), 200313H3: 12L-12Dx4 LLx3, 210814H1, 210814H2, 240414H1, 240414H2, 270213H1: 10L10Dx4 LLx3 (T-20), 270213H3: 12R-12Dx4 RRx3, 270313H1: 21L 7Dx4 LLx3 (T-28), 270313H3: 12L-12Dx4 LLx3, 280814H1, 280814H2, 290313H2: 15L 5Dx4 LLx3, AT0043: 4x 12:12-DD, AT0048 4x 18:6-DD, AT0078: 4x6:18-DD, AT0080: 4x18:6-DD
100414H2
| Property | Value |
|---|---|
| BioDare ID | 13983251032563 |
| Author | Yvette Wilson |
| Institution | |
| License |
Description
12L:12D x4 LLx3. Light intensity is 90 umolm-2s-1 (red = 51 umolm-2s-1, blue = 32 umol-2s-1)
Partner experiment: 100414H1
Purpose
Double dawn experiment to compare to Mark Stitt's results
Comments
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Millar Andrew
Study: TiMet double dawns
100414H1
| Property | Value |
|---|---|
| BioDare ID | 13982674508951 |
| Author | Yvette Wilson |
| Institution | |
| License |
Description
At ZT0 dawn is dim light (6umolm-2s-1) for 6 hours. At ZT6 light steps up to 90 umolm-2s-2. Dusk is lights off at ZT 12. Double dawn cycle is for 4 days then continuous light for 3 days. ie 12L:12D x4 LLx3.
Purpose
Double dawn experiment to compare to Mark Stitt's results
Comments
Pedro is not able to record changes in ...
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Millar Andrew
Study: TiMet double dawns
030714H2
| Property | Value |
|---|---|
| BioDare ID | 1647 |
| Author | Yvette Wilson |
| Institution | |
| License |
Description
12L:12D x4 LLx3. Light intensity is 90 umolm-2s-1 (red = 51 umolm-2s-1, blue = 32 umol-2s-1)
Partner experiment: 030714H1
Purpose
Double dawn experiment to compare to Mark Stitt's results
Comments
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Millar Andrew
Study: TiMet double dawns
030714H1
| Property | Value |
|---|---|
| BioDare ID | 1646 |
| Author | Yvette Wilson |
| Institution | |
| License |
Description
At ZT0 dawn is dim light (6umolm-2s-1) for 6 hours. At ZT6 light steps up to 90 umolm-2s-2. Dusk is lights off at ZT 12. Double dawn cycle is for 4 days then continuous light for 3 days. ie 12L:12D x4 LLx3.
Purpose
Double dawn experiment to compare to Mark Stitt's results
Comments
Pedro is not able to record changes in intensity ...
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Millar Andrew
Study: TiMet double dawns
070814H2
| Property | Value |
|---|---|
| BioDare ID | 1688 |
| Author | Yvette Wilson |
| Institution | |
| License |
Description
12L:12D x4 LLx3. Light intensity is 90 umolm-2s-1 (red = 51 umolm-2s-1, blue = 32 umol-2s-1)
Partner experiment: 070814H1
Purpose
Double dawn experiment to compare to Mark Stitt's results
Comments
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Millar Andrew
Study: TiMet double dawns
070814H1
| Property | Value |
|---|---|
| BioDare ID | 1687 |
| Author | Yvette Wilson |
| Institution | |
| License |
Description
At ZT0 dawn is dim light (1 umolm-2s-1) for 6 hours. At ZT6 light steps up to 90 umolm-2s-2. Dusk is lights off at ZT 12. Double dawn cycle is for 4 days then continuous light for 3 days. ie 12L:12D x4 LLx3.
Purpose
Double dawn experiment to compare to Mark Stitt's results
Comments
Pedro is not able to record changes in intensity ...
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Millar Andrew
Study: TiMet double dawns
140814H2
| Property | Value |
|---|---|
| BioDare ID | 1924 |
| Author | Yvette Wilson |
| Institution | |
| License |
Description
6D: 6L:12D x4 LLx3. Light intensity is 90 umolm-2s-1 (red = 51 umolm-2s-1, blue = 32 umol-2s-1)
Partner experiment: 140814H1
Purpose
Double dawn experiment to compare to Mark Stitt's results
Comments
one plate had very bad fungal contamination (plate 2). The samples affected are indicated in the 'experimental conditions'.
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Millar Andrew
Study: TiMet double dawns
140814H1
| Property | Value |
|---|---|
| BioDare ID | 1923 |
| Author | Yvette Wilson |
| Institution | |
| License |
Description
At ZT0 dawn is dim light (1umolm-2s-1) for 6 hours. At ZT6 light steps up to 90 umolm-2s-2. Dusk is lights off at ZT 12. Double dawn cycle is for 4 days then continuous light for 3 days. ie 12L:12D x4 LLx3.
Purpose
Double dawn experiment to compare to Mark Stitt's results
Comments
Pedro is not able to record changes in intensity ...
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Millar Andrew
Study: TiMet double dawns
280814H2
| Property | Value |
|---|---|
| BioDare ID | 1928 |
| Author | Yvette Wilson |
| Institution | |
| License |
Description
6D: 6L:12D x4 LLx3. Light intensity is 90 umolm-2s-1 (red = 51 umolm-2s-1, blue = 32 umol-2s-1)
Partner experiment: 280814H1
Purpose
Double dawn experiment to compare to Mark Stitt's results
Comments
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Millar Andrew
Study: TiMet double dawns
280814H1
| Property | Value |
|---|---|
| BioDare ID | 1927 |
| Author | Yvette Wilson |
| Institution | |
| License |
Description
At ZT0 dawn is dim light (1umolm-2s-1) for 6 hours. At ZT6 light steps up to 90 umolm-2s-2. Dusk is lights off at ZT 12. Double dawn cycle is for 4 days then continuous light for 4 days. ie 12L:12D x4 LLx4.
Purpose
Double dawn experiment to compare to Mark Stitt's results
Comments
Pedro is not able to record changes in intensity ...
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Millar Andrew
Study: TiMet double dawns
140515H2
| Property | Value |
|---|---|
| BioDare ID | 3188 |
| Author | Sarah Hodge |
| Institution | MPIMP - UEDIN |
| License |
Description
ZT0 lights remain switched off until ZT3. At ZT3 light comes on at 90 umolm-2s-1. Dusk is lights off at ZT 12. Dark dawn cycle is for 4 days then continuous light (first day with dark dawn) for 3 days. ie 9L:15D x4 LLx3.
Purpose
Control "dark" dawn experiment for double dawn experiment based on Virginie and Thiago's design ...
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Millar Andrew
Study: TiMet double dawns
140515H1
| Property | Value |
|---|---|
| BioDare ID | 3187 |
| Author | Sarah Hodge |
| Institution | MPIMP - UEDIN |
| License |
Description
At ZT0 dawn is dim light (6umolm-2s-1) for 3 hours. At ZT3 light steps up to 90 umolm-2s-1. Dusk is lights off at ZT 12. Double dawn cycle is for 4 days then continuous light (first day with double dawn) for 3 days. ie 12L:12D x4 LLx3.
Purpose
Double dawn experiment based on Virginie and Thiago's design (Stitt Lab).
...
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Millar Andrew
Study: TiMet double dawns
140515H1 Arduino log (from BioDare)
Creator: Sarah Hodge
Submitter: Daniel Thedie
140515_Entrainment in_P12_ (from BioDare)
Creator: Sarah Hodge
Submitter: Daniel Thedie
140515H1 pedro (from BioDare)
Creator: Sarah Hodge
Submitter: Daniel Thedie
140515H1_rawdata (from BioDare)
Creator: Sarah Hodge
Submitter: Daniel Thedie
List of samples used in the assay (extracted from original BioDare metadata and converted to csv)
Creator: Sarah Hodge
Submitter: Daniel Thedie
Original BioDare metadata, converted to json format
Creator: Sarah Hodge
Submitter: Daniel Thedie
Readme file
Creator: Sarah Hodge
Submitter: Daniel Thedie
140515_Entrainment & 140515H2 expt conditions_in_P12 (from BioDare)
Creator: Sarah Hodge
Submitter: Daniel Thedie
140515H2 pedro (from BioDare)
Creator: Sarah Hodge
Submitter: Daniel Thedie
140515H2_rawdata (from BioDare)
Creator: Sarah Hodge
Submitter: Daniel Thedie
List of samples used in the assay (extracted from original BioDare metadata and converted to csv)
Creator: Sarah Hodge
Submitter: Daniel Thedie
Original BioDare metadata, converted to json format
Creator: Sarah Hodge
Submitter: Daniel Thedie
Readme file
Creator: Sarah Hodge
Submitter: Daniel Thedie
280814H1_LOG (from BioDare)
Creator: Yvette Wilson
Submitter: Daniel Thedie
SCRIPT03 (from BioDare)
Creator: Yvette Wilson
Submitter: Daniel Thedie
SCRIPT02 (from BioDare)
Creator: Yvette Wilson
Submitter: Daniel Thedie
SCRIPT01 (from BioDare)
Creator: Yvette Wilson
Submitter: Daniel Thedie
SCRIPT (from BioDare)
Creator: Yvette Wilson
Submitter: Daniel Thedie
280814H1_metamorph.2 (from BioDare)
Creator: Yvette Wilson
Submitter: Daniel Thedie
List of samples used in the assay (extracted from original BioDare metadata and converted to csv)
Creator: Yvette Wilson
Submitter: Daniel Thedie
