Millar et al. (2015)
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Changing planetary rotation rescues the biological clock mutant lhy cca1 of Arabidopsis thaliana
Millar et al. (2015)
DOI: 10.1101/034629
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Created: 18th Jun 2026 at 13:24
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https://orcid.org/0000-0002-1352-7245Research Software Engineer in the Biological Research Data Management team (BioRDM) at the University of Edinburgh.
The Centre for Engineering Biology is the University of Edinburgh's research organisation in interdisciplinary, Synthetic and Systems Biology, founded in 2023 as the successor to SynthSys, itself founded in 2012 as the successor to the Centre for Systems Biology at Edinburgh (CSBE). CSBE was newly founded in 2007. The Centre for Engineering Biology is a hub organisation that links across multiple, major funding awards, including an Engineering Biology Mission Hub, and EPSRC C-loop.
Projects: Millar group, PHYTOCAL: Phytochrome Control of Resource Allocation and Growth in Arabidopsis and in Brassicaceae crops, TiMet, POP - the Parameter Optimisation Problem, Regulation of flowering time in natural conditions, PlaSMo model repository, BioDare1
Web page: https://biology.ed.ac.uk/centre-engineering-biology
Experiment data previously hosted on the original version of BioDare (biodare.ed.ac.uk).
Programme: Centre for Engineering Biology (prev. SynthSys)
Public web page: Not specified
Collection of experiments created by Millar Andrew on the original BioDare and automatically transferred to FAIRDOM Hub.
Submitter: Daniel Thedie
Studies: Millar et al. (2015), TiMet double dawns, TiMet shady nights
Assays: 010514H1, 010514H2, 030413H3: 12B-12Dx4 BB3, 030714H1, 030714H2, 060213H3: 12B-12Dx4 BBx3, 060313H1: 5L15Dx4 LLx3 (T-20), 060313H2: 12F-12Dx4 FFx3, 070814H1, 070814H2, 080115H1, 080115H2, 100414H1, 100414H2, 130212H1: 5L15Dx4 LLx3 (T-20), 130213H3: 12R-12Dx4 RRx3, 130313H1: 14L14D x 4 LL x 3 (T-28), 130313H2: 12F-12Dx4 FFx3, 140515H1, 140515H2, 140814H1, 140814H2, 190614H1, 190614H2, 200213H1: 15L5D x4 LL x3 (T-20), 200213H3: 12B-12Dx4 BB3, 200313H2: 7L 21Dx4 LLx3 (T-28), 200313H3: 12L-12Dx4 LLx3, 210814H1, 210814H2, 240414H1, 240414H2, 270213H1: 10L10Dx4 LLx3 (T-20), 270213H3: 12R-12Dx4 RRx3, 270313H1: 21L 7Dx4 LLx3 (T-28), 270313H3: 12L-12Dx4 LLx3, 280814H1, 280814H2, 290313H2: 15L 5Dx4 LLx3, AT0043: 4x 12:12-DD, AT0048 4x 18:6-DD, AT0078: 4x6:18-DD, AT0080: 4x18:6-DD
AT0078: 4x6:18-DD
| Property | Value |
|---|---|
| BioDare ID | 12729899933214 |
| Author | Adrian Thomson |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
LUC imaging 6L:18D into constant dark
Purpose
testing phase changes of clock components under different photoperiods
Comments
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Millar Andrew
Study: Millar et al. (2015)
AT0043: 4x 12:12-DD
| Property | Value |
|---|---|
| BioDare ID | 12730739255199 |
| Author | Adrian Thomson |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
LUC imaging 12:12 blue+red into constant darkness
Purpose
testing acute light responses at dawn and dusk
Comments
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Millar Andrew
Study: Millar et al. (2015)
AT0048 4x 18:6-DD
| Property | Value |
|---|---|
| BioDare ID | 12730752301671 |
| Author | Adrian Thomson |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
4 days of 18hrs light, 6hrs dark into 3 days constant dark
Purpose
changes to photoperiod
Comments
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Millar Andrew
Study: Millar et al. (2015)
AT0080: 4x18:6-DD
| Property | Value |
|---|---|
| BioDare ID | 12730527312073 |
| Author | Adrian Thomson |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
LUC imaging 18L:6D into constant dark
Purpose
testing phase changes of clock components under different photoperiods
Comments
Pedro prepared by editing groups from previous template
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Millar Andrew
Study: Millar et al. (2015)
270213H3: 12R-12Dx4 RRx3
| Property | Value |
|---|---|
| BioDare ID | 13630953803730 |
| Author | Jamie Carrington |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
Plants entrained in 12L 12D white light Experimental conditions: 12L-12Dx4 LLx3 (Red)
Purpose
Test how the phytochromes interact with the circadian clock (WT, lhy/cca1 double mutant and lhy/cca1/gi triple mutant)
Comments
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Millar Andrew
Study: Millar et al. (2015)
130213H3: 12R-12Dx4 RRx3
| Property | Value |
|---|---|
| BioDare ID | 13618784212904 |
| Author | Jamie Carrington |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
Plants entrained in 12L 12D white light Experimental conditions: 12L-12Dx4 LLx3 (Red)
Purpose
Test how the phytochromes interact with the circadian clock (WT, lhy/cca1 double mutant and lhy/cca1/gi triple mutant)
Comments
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Millar Andrew
Study: Millar et al. (2015)
200213H3: 12B-12Dx4 BB3
| Property | Value |
|---|---|
| BioDare ID | 13619780272531 |
| Author | Jamie Carrington |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
Plants entrained in 12L 12D white light Experimental conditions: 12L-12Dx4 LLx3 (Blue)
Purpose
Test how the cryptochromes interact with the circadian clock (WT, lhy/cca1 double mutant and lhy/cca1/gi triple mutant)
Comments
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Millar Andrew
Study: Millar et al. (2015)
060213H3: 12B-12Dx4 BBx3
| Property | Value |
|---|---|
| BioDare ID | 13615365050841 |
| Author | Jamie Carrington |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
Plants entrained in 12L 12D white light Experimental conditions: 12L-12Dx4 LLx3 (Blue)
Purpose
Test how the cryptochromes interact with the circadian clock (WT, lhy/cca1 double mutant and lhy/cca1/gi triple mutant)
Comments
Imaging script started at ZT+7mins, therefore ...
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Millar Andrew
Study: Millar et al. (2015)
030413H3: 12B-12Dx4 BB3
| Property | Value |
|---|---|
| BioDare ID | 13661271159675 |
| Author | Jamie Carrington |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
Plants entrained in 12L 12D white light Experimental conditions: 12L-12Dx4 LLx3 (Blue)
Purpose
Test how the cryptochromes interact with the circadian clock (WT, lhy/cca1 double mutant and lhy/cca1/gi triple mutant)
Comments
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Millar Andrew
Study: Millar et al. (2015)
270313H3: 12L-12Dx4 LLx3
| Property | Value |
|---|---|
| BioDare ID | 13650039169340 |
| Author | Jamie Carrington |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
Plants entrained in 12L 12D white light Experimental conditions: 12L-12Dx4 LLx3 ('white')
Purpose
'White' (red+blue) light control experiment for the phytochrome and cryptochrome experiments
Comments
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Millar Andrew
Study: Millar et al. (2015)
200313H3: 12L-12Dx4 LLx3
| Property | Value |
|---|---|
| BioDare ID | 13644021710933 |
| Author | Jamie Carrington |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
Plants entrained in 12L 12D white light Experimental conditions: 12L-12Dx4 LLx3 ('white')
Purpose
'White' (red+blue) light control experiment for the phytochrome and cryptochrome experiments
Comments
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Millar Andrew
Study: Millar et al. (2015)
060313H2: 12F-12Dx4 FFx3
| Property | Value |
|---|---|
| BioDare ID | 13631095320942 |
| Author | Jamie Carrington |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
Plants entrained in 12L 12D white light Experimental conditions: 12L-12Dx4 LLx3 (Far-Red)
Purpose
Test how the phytochromes interact with the circadian clock (WT, lhy/cca1 double mutant and lhy/cca1/gi triple mutant)
Comments
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Millar Andrew
Study: Millar et al. (2015)
130313H2: 12F-12Dx4 FFx3
| Property | Value |
|---|---|
| BioDare ID | 13639713266200 |
| Author | Jamie Carrington |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
Plants entrained in 12L 12D white light Experimental conditions: 12L-12Dx4 LLx3 (Far-Red)
Purpose
Test how the phytochromes interact with the circadian clock (WT, lhy/cca1 double mutant and lhy/cca1/gi triple mutant)
Comments
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Millar Andrew
Study: Millar et al. (2015)
060313H1: 5L15Dx4 LLx3 (T-20)
| Property | Value |
|---|---|
| BioDare ID | 13631017726171 |
| Author | Wei Ven Tee |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
Plants entrained in 5L 15D Experimental conditions: 5L15Dx4 LLx3
Purpose
To test whether cca1/lhy double mutant can adjust to change in photoperiod in T-cycle
Comments
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Millar Andrew
Study: Millar et al. (2015)
130212H1: 5L15Dx4 LLx3 (T-20)
| Property | Value |
|---|---|
| BioDare ID | 13615471409903 |
| Author | Wei Ven Tee |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
Plants entrained in 5L 15D Experimental conditions: 5L15Dx4 LLx3
Purpose
To test whether cca1/lhy double mutant can adjust to change in photoperiod in T-cycle
Comments
1.) 2H of L were cut short at the end of the first day of experimental condition (3L17D). 2.) ...
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Millar Andrew
Study: Millar et al. (2015)
270213H1: 10L10Dx4 LLx3 (T-20)
| Property | Value |
|---|---|
| BioDare ID | 13624982192162 |
| Author | Wei Ven Tee |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
Plants entrained in 5L 15D Experimental conditions: 5L15Dx4 LLx3
Purpose
To test whether cca1/lhy double mutant can adjust to change in photoperiod in T-cycle
Comments
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Millar Andrew
Study: Millar et al. (2015)
290313H2: 15L 5Dx4 LLx3
| Property | Value |
|---|---|
| BioDare ID | 13649886952409 |
| Author | Wei Ven Tee |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
Plants entrained in 15L 5D Experimental conditions: 15L 5Dx4 LLx3
Purpose
To test whether cca1/lhy double mutant can adjust to change in photoperiod in T-cycle
Comments
5mins of light at the end of daytime during the first three imaging days appear to be absent, using the ...
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Millar Andrew
Study: Millar et al. (2015)
200213H1: 15L5D x4 LL x3 (T-20)
| Property | Value |
|---|---|
| BioDare ID | 13618962781900 |
| Author | Wei Ven Tee |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
Plants entrained in 15L 5D Experimental conditions: 15L 5Dx4 LLx3
Purpose
To test whether cca1/lhy double mutant can adjust to change in photoperiod in T-cycle.
Comments
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Millar Andrew
Study: Millar et al. (2015)
200313H2: 7L 21Dx4 LLx3 (T-28)
| Property | Value |
|---|---|
| BioDare ID | 13643892291642 |
| Author | Wei Ven Tee |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
Plants entrained in 7L 21D Experimental conditions: 7L21Dx4 LLx3
Purpose
To test whether cca1/lhy double mutant can adjust to change in photoperiod in T-cycle
Comments
5mins of light at the end of daytime on imaging day 2 and day 3 appeared to be absent, using the ...
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Millar Andrew
Study: Millar et al. (2015)
130313H1: 14L14D x 4 LL x 3 (T-28)
| Property | Value |
|---|---|
| BioDare ID | 13637871113032 |
| Author | Wei Ven Tee |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
Plants entrained in 14L 14D Experimental conditions: 14L14Dx4 LLx3
Purpose
To test whether cca1/lhy double mutant can adjust to change in photoperiod in T-cycle
Comments
Wrong imaging script was used (90mins) for T-28. 5mins, 10mins and 10mins of L was cut out ...
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Millar Andrew
Study: Millar et al. (2015)
270313H1 (from BioDare)
Creator: Wei Ven Tee
Submitter: Daniel Thedie
270313H1 (from BioDare)
Creator: Wei Ven Tee
Submitter: Daniel Thedie
270313H1_IMG_21L7D (from BioDare)
Creator: Wei Ven Tee
Submitter: Daniel Thedie
STANDARD_DATAFILE (from BioDare)
Creator: Wei Ven Tee
Submitter: Daniel Thedie
STANDARD_RAWDATAFILE (from BioDare)
Creator: Wei Ven Tee
Submitter: Daniel Thedie
RAW_270313H1 (from BioDare)
Creator: Wei Ven Tee
Submitter: Daniel Thedie
List of samples used in the assay (extracted from original BioDare metadata and converted to csv)
Creator: Wei Ven Tee
Submitter: Daniel Thedie
Original BioDare metadata, converted to json format
Creator: Wei Ven Tee
Submitter: Daniel Thedie
Readme file
Creator: Wei Ven Tee
Submitter: Daniel Thedie
130313H1 (from BioDare)
Creator: Wei Ven Tee
Submitter: Daniel Thedie
130313H3 (from BioDare)
Creator: Wei Ven Tee
Submitter: Daniel Thedie
130313H1_IMG_14L14D (from BioDare)
Creator: Wei Ven Tee
Submitter: Daniel Thedie
STANDARD_DATAFILE.1 (from BioDare)
Creator: Wei Ven Tee
Submitter: Daniel Thedie
STANDARD_RAWDATAFILE.1 (from BioDare)
Creator: Wei Ven Tee
Submitter: Daniel Thedie
RAW_200313H1.1 (from BioDare)
Creator: Wei Ven Tee
Submitter: Daniel Thedie
List of samples used in the assay (extracted from original BioDare metadata and converted to csv)
Creator: Wei Ven Tee
Submitter: Daniel Thedie
Original BioDare metadata, converted to json format
Creator: Wei Ven Tee
Submitter: Daniel Thedie
Readme file
Creator: Wei Ven Tee
Submitter: Daniel Thedie
200313H2 (from BioDare)
Creator: Wei Ven Tee
Submitter: Daniel Thedie
200313H2_IMG_7L21D (from BioDare)
Creator: Wei Ven Tee
Submitter: Daniel Thedie
Abstract (Expand)
Authors: Andrew J. Millar, Jamie T. Carrington, Wei Ven Tee, Sarah K. Hodge
Date Published: 17th Dec 2015
Publication Type: Preprint
