TiMet shady nights

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TiMet shady nights

DOI: None

SEEK ID: https://fairdomhub.org/studies/1490

Investigation: Millar Andrew

Projects: BioDare1

Study position:

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Creators and Submitter

Creators

Not specified

Submitter

Daniel Thedie

Activity

Views: 56

Created: 18th Jun 2026 at 14:51

Last updated: 18th Jun 2026 at 15:46

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Daniel Thedie

Projects: Millar group, BioDare1

Institutions: University of Edinburgh, School of Biological Sciences, University of Edinburgh

https://orcid.org/0000-0002-1352-7245

Expertise: Data Management, Python, R, Programming, microscopy, fluorescence protein fusions, Software Engineering

Tools: Data Management, Python, R, Fluorescence and confocal microscopy, Time-lapse fluorescence microscopy Flow cytometry, Fluorecence based reporter gene analyses/single cell analyses

Research Software Engineer in the Biological Research Data Management team (BioRDM) at the University of Edinburgh.

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Centre for Engineering Biology (prev. SynthSys)

The Centre for Engineering Biology is the University of Edinburgh's research organisation in interdisciplinary, Synthetic and Systems Biology, founded in 2023 as the successor to SynthSys, itself founded in 2012 as the successor to the Centre for Systems Biology at Edinburgh (CSBE). CSBE was newly founded in 2007. The Centre for Engineering Biology is a hub organisation that links across multiple, major funding awards, including an Engineering Biology Mission Hub, and EPSRC C-loop.

Projects: Millar group, PHYTOCAL: Phytochrome Control of Resource Allocation and Growth in Arabidopsis and in Brassicaceae crops, TiMet, POP - the Parameter Optimisation Problem, Regulation of flowering time in natural conditions, PlaSMo model repository, BioDare1

Web page: https://biology.ed.ac.uk/centre-engineering-biology

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BioDare1

Experiment data previously hosted on the original version of BioDare (biodare.ed.ac.uk).

Programme: Centre for Engineering Biology (prev. SynthSys)

Public web page: Not specified

Organisms: Not specified

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Millar Andrew

BioDare1

Collection of experiments created by Millar Andrew on the original BioDare and automatically transferred to FAIRDOM Hub.

Submitter: Daniel Thedie

Studies: Millar et al. (2015), TiMet double dawns, TiMet shady nights

Assays: 010514H1, 010514H2, 030413H3: 12B-12Dx4 BB3, 030714H1, 030714H2, 060213H3: 12B-12Dx4 BBx3, 060313H1: 5L15Dx4 LLx3 (T-20), 060313H2: 12F-12Dx4 FFx3, 070814H1, 070814H2, 080115H1, 080115H2, 100414H1, 100414H2, 130212H1: 5L15Dx4 LLx3 (T-20), 130213H3: 12R-12Dx4 RRx3, 130313H1: 14L14D x 4 LL x 3 (T-28), 130313H2: 12F-12Dx4 FFx3, 140515H1, 140515H2, 140814H1, 140814H2, 190614H1, 190614H2, 200213H1: 15L5D x4 LL x3 (T-20), 200213H3: 12B-12Dx4 BB3, 200313H2: 7L 21Dx4 LLx3 (T-28), 200313H3: 12L-12Dx4 LLx3, 210814H1, 210814H2, 240414H1, 240414H2, 270213H1: 10L10Dx4 LLx3 (T-20), 270213H3: 12R-12Dx4 RRx3, 270313H1: 21L 7Dx4 LLx3 (T-28), 270313H3: 12L-12Dx4 LLx3, 280814H1, 280814H2, 290313H2: 15L 5Dx4 LLx3, AT0043: 4x 12:12-DD, AT0048 4x 18:6-DD, AT0078: 4x6:18-DD, AT0080: 4x18:6-DD

Snapshots: No snapshots

Created: 18th Jun 2026 at 13:24

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240414H2

BioDare1

240414H2

Property	Value
BioDare ID	1132
Author	Yvette Wilson
Institution
License

Description

Experimental conditions (Red and Blue) 12 hours light : 12 hours dark x4 followed by 3 days constant light. light is at 90umolm-2s-1 (red = 51 umolm-2s-1, blue = 32 umol-2s-1)

Purpose

Comparison of Light:Shady night versus standard lights ON/OFF to dissect the role of photoreceptors and photosynthesis in the circadian clock.

Comments

...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: TiMet shady nights

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 240414H2_LOG, 240414H2_metamorph, BioDare_metadata, Readme, STANDARD_DATAFILE, STANDARD_RAWDATAFILE, Sample_list

Snapshots: No snapshots

Created: 18th Jun 2026 at 14:51, Last updated: 18th Jun 2026 at 14:53

240414H1

BioDare1

240414H1

Property	Value
BioDare ID	1130
Author	Yvette Wilson
Institution
License

Description

Plants entrained in 12L 12D white light.

Experimental conditions (Red and Blue) 12 hours light (90umolm-2s-1): 12 hours shady dark (6 umolm-2s-1) x4, constant light x3. Dawn is at ZT0 and dusk (shady dark) is at ZT12.

Purpose

Comparison of Light:Shady night versus standard lights ON/OFF to dissect the role of photoreceptors and ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: TiMet shady nights

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 240414H1_LOG, 240414H1_metamorph.3, BioDare_metadata, Readme, SCRIPT, SCRIPT01, SCRIPT02, STANDARD_DATAFILE.4, STANDARD_RAWDATAFILE.4, Sample_list

Snapshots: No snapshots

Created: 18th Jun 2026 at 14:54, Last updated: 18th Jun 2026 at 14:57

010514H2

BioDare1

010514H2

Property	Value
BioDare ID	1245
Author	Yvette Wilson
Institution
License

Description

Experimental conditions (Red and Blue) 12 hours light : 12 hours dark x4 followed by 3 days constant light. light is at 90umolm-2s-1 (red = 51 umolm-2s-1, blue = 32 umol-2s-1)

Purpose

Comparison of Light:Shady night versus standard lights ON/OFF to dissect the role of photoreceptors and photosynthesis in the circadian clock.

Comments

...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: TiMet shady nights

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 010514H2_log, 010514H2_metamorph, BioDare_metadata, Readme, STANDARD_DATAFILE, STANDARD_RAWDATAFILE, Sample_list

Snapshots: No snapshots

Created: 18th Jun 2026 at 14:57, Last updated: 18th Jun 2026 at 14:59

010514H1

BioDare1

010514H1

Property	Value
BioDare ID	1244
Author	Yvette Wilson
Institution
License

Description

Plants entrained in 12L 12D white light.

Experimental conditions (Red and Blue) 12 hours light (90umolm-2s-1): 12 hours shady dark (6 umolm-2s-1) x4, constant light x3. Dawn is at ZT0 and dusk (shady dark) is at ZT12.

Purpose

Comparison of Light:Shady night versus standard lights ON/OFF to dissect the role of photoreceptors and ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: TiMet shady nights

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 010514H1_log, 010514H1_metamorph, BioDare_metadata, Readme, SCRIPT, SCRIPT01, SCRIPT02, STANDARD_DATAFILE, STANDARD_RAWDATAFILE, Sample_list

Snapshots: No snapshots

Created: 18th Jun 2026 at 15:00, Last updated: 18th Jun 2026 at 15:02

190614H2

BioDare1

190614H2

Property	Value
BioDare ID	1643
Author	Yvette Wilson
Institution
License

Description

Experimental conditions (Red and Blue) 12 hours light : 12 hours dark x4 followed by 3 days constant light. light is at 90umolm-2s-1 (red = 51 umolm-2s-1, blue = 32 umol-2s-1)

Purpose

Comparison of Light:Shady night versus standard lights ON/OFF to dissect the role of photoreceptors and photosynthesis in the circadian clock.

Comments

...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: TiMet shady nights

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 190614H2_LOG, 190614H2_metamorph, BioDare_metadata, Readme, Sample_list

Snapshots: No snapshots

Created: 18th Jun 2026 at 15:03, Last updated: 18th Jun 2026 at 15:04

190614H1

BioDare1

190614H1

Property	Value
BioDare ID	1642
Author	Yvette Wilson
Institution
License

Description

Plants entrained in 12L 12D white light.

Experimental conditions (Red and Blue) 12 hours light (90umolm-2s-1): 12 hours shady dark (6 umolm-2s-1) x4, constant light x3. Dawn is at ZT0 and dusk (shady dark) is at ZT12.

Purpose

Comparison of Light:Shady night versus standard lights ON/OFF to dissect the role of photoreceptors and ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: TiMet shady nights

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 190614H1_metamorph, 290614H1_LOG, BioDare_metadata, Readme, SCRIPT, SCRIPT01, SCRIPT02, Sample_list

Snapshots: No snapshots

Created: 18th Jun 2026 at 15:05, Last updated: 18th Jun 2026 at 15:07

210814H2

BioDare1

210814H2

Property	Value
BioDare ID	1926
Author	Yvette Wilson
Institution
License

Description

Experimental conditions (Red and Blue) 12 hours light : 12 hours dark x7 light is at 90umolm-2s-1 (red = 51 umolm-2s-1, blue = 32 umol-2s-1)

Purpose

Comparison of Light:Shady night versus standard lights ON/OFF to dissect the role of photoreceptors and photosynthesis in the circadian clock.

Comments

Partner experiment: 210814H1

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: TiMet shady nights

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 210814H2_LOG, 210814H2_metamorph, BioDare_metadata, Readme, Sample_list

Snapshots: No snapshots

Created: 18th Jun 2026 at 15:07, Last updated: 18th Jun 2026 at 15:08

210814H1

BioDare1

210814H1

Property	Value
BioDare ID	1925
Author	Yvette Wilson
Institution
License

Description

Plants entrained in 12L 12D white light.

Experimental conditions (Red and Blue) 12 hours light (90umolm-2s-1): 12 hours shady dark (6 umolm-2s-1) x7, Dawn is at ZT0 and dusk (shady dark) is at ZT12.

Purpose

Comparison of Light:Shady night versus standard lights ON/OFF to dissect the role of photoreceptors and photosynthesis in the ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: TiMet shady nights

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 210814H1_LOG, 210814H1_metamorph, BioDare_metadata, Readme, SCRIPT, SCRIPT01, SCRIPT02, Sample_list

Snapshots: No snapshots

Created: 18th Jun 2026 at 15:09, Last updated: 18th Jun 2026 at 15:11

080115H2

BioDare1

080115H2

Property	Value
BioDare ID	2630
Author	Yvette Wilson
Institution
License

Description

Experimental conditions (Red and Blue) 12 hours light : 12 hours dark x4 followed by 3 days constant light. light is at 90umolm-2s-1 (red = 51 umolm-2s-1, blue = 32 umol-2s-1)

Purpose

Comparison of Light:Shady night versus standard lights ON/OFF to dissect the role of photoreceptors and photosynthesis in the circadian clock.

Comments

...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: TiMet shady nights

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 080115H2_LOG, 080115H2_metamorph, BioDare_metadata, Readme, Sample_list

Snapshots: No snapshots

Created: 18th Jun 2026 at 15:11, Last updated: 18th Jun 2026 at 15:12

080115H1

BioDare1

080115H1

Property	Value
BioDare ID	2629
Author	Yvette Wilson
Institution
License

Description

Plants entrained in 12L 12D white light.

Experimental conditions (Red and Blue) 12 hours light (90umolm-2s-1): 12 hours shady dark (6 umolm-2s-1) x4, constant light x3. Dawn is at ZT0 and dusk (shady dark) is at ZT12.