Assays

What is an Assay?

Filters

Query

Created At

Updated At

Project

Submitter

Organism

Assay class

Assay type

Technology type

ISA-JSON compliance

21 Assays visible to you, out of a total of 21

270313H1: 21L 7Dx4 LLx3 (T-28)

BioDare1

270313H1: 21L 7Dx4 LLx3 (T-28)

Property	Value
BioDare ID	13649842953637
Author	Wei Ven Tee
Institution	University of Edinburgh
License	CC_BY

Description

Plants entrained in 21L 7D Experimental conditions: 21L7Dx4 LLx3

Purpose

To test whether cca1/lhy double mutant can adjust to change in photoperiod in T-cycle

Comments

5mins of light at the end of daytime during the first three imaging days appear to be absent, ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: Millar et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 270313H1, 270313H1, 270313H1_IMG_21L7D, BioDare_metadata, RAW_270313H1, Readme, STANDARD_DATAFILE, STANDARD_RAWDATAFILE, Sample_list

Snapshots: No snapshots

Created: 18th Jun 2026 at 14:20, Last updated: 18th Jun 2026 at 14:23

130313H1: 14L14D x 4 LL x 3 (T-28)

BioDare1

130313H1: 14L14D x 4 LL x 3 (T-28)

Property	Value
BioDare ID	13637871113032
Author	Wei Ven Tee
Institution	University of Edinburgh
License	CC_BY

Description

Plants entrained in 14L 14D Experimental conditions: 14L14Dx4 LLx3

Purpose

To test whether cca1/lhy double mutant can adjust to change in photoperiod in T-cycle

Comments

Wrong imaging script was used (90mins) for T-28. 5mins, 10mins and 10mins of L was cut out ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: Millar et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 130313H1, 130313H1_IMG_14L14D, 130313H3, BioDare_metadata, RAW_200313H1.1, Readme, STANDARD_DATAFILE.1, STANDARD_RAWDATAFILE.1, Sample_list

Snapshots: No snapshots

Created: 18th Jun 2026 at 14:18, Last updated: 18th Jun 2026 at 14:20

200313H2: 7L 21Dx4 LLx3 (T-28)

BioDare1

200313H2: 7L 21Dx4 LLx3 (T-28)

Property	Value
BioDare ID	13643892291642
Author	Wei Ven Tee
Institution	University of Edinburgh
License	CC_BY

Description

Plants entrained in 7L 21D Experimental conditions: 7L21Dx4 LLx3

Purpose

To test whether cca1/lhy double mutant can adjust to change in photoperiod in T-cycle

Comments

5mins of light at the end of daytime on imaging day 2 and day 3 appeared to be absent, using the ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: Millar et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 200313H1_7L21D, 200313H2, 200313H2_IMG_7L21D, BioDare_metadata, RAW_200313H2, Readme, STANDARD_DATAFILE, STANDARD_RAWDATAFILE, Sample_list

Snapshots: No snapshots

Created: 18th Jun 2026 at 14:15, Last updated: 18th Jun 2026 at 14:17

200213H1: 15L5D x4 LL x3 (T-20)

BioDare1

200213H1: 15L5D x4 LL x3 (T-20)

Property	Value
BioDare ID	13618962781900
Author	Wei Ven Tee
Institution	University of Edinburgh
License	CC_BY

Description

Plants entrained in 15L 5D Experimental conditions: 15L 5Dx4 LLx3

Purpose

To test whether cca1/lhy double mutant can adjust to change in photoperiod in T-cycle.

Comments

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: Millar et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 200213H1_15L5D, 200213H1_IMG_15L5D, BioDare_metadata, RAW 200213H1.2, Readme, STANDARD_DATAFILE.2, STANDARD_RAWDATAFILE.2, Sample_list

Snapshots: No snapshots

Created: 18th Jun 2026 at 14:12, Last updated: 18th Jun 2026 at 14:14

290313H2: 15L 5Dx4 LLx3

BioDare1

290313H2: 15L 5Dx4 LLx3

Property	Value
BioDare ID	13649886952409
Author	Wei Ven Tee
Institution	University of Edinburgh
License	CC_BY

Description

Plants entrained in 15L 5D Experimental conditions: 15L 5Dx4 LLx3

Purpose

To test whether cca1/lhy double mutant can adjust to change in photoperiod in T-cycle

Comments

5mins of light at the end of daytime during the first three imaging days appear to be absent, using the ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: Millar et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 290313H2, 290313H2_15L5D_1, 290313H2_15L5D_2, 290313H2_15L5D_IMG, BioDare_metadata, RAW_290313H2, Readme, STANDARD_DATAFILE, STANDARD_RAWDATAFILE, Sample_list

Snapshots: No snapshots

Created: 18th Jun 2026 at 14:08, Last updated: 18th Jun 2026 at 14:11

270213H1: 10L10Dx4 LLx3 (T-20)

BioDare1

270213H1: 10L10Dx4 LLx3 (T-20)

Property	Value
BioDare ID	13624982192162
Author	Wei Ven Tee
Institution	University of Edinburgh
License	CC_BY

Description

Plants entrained in 5L 15D Experimental conditions: 5L15Dx4 LLx3

Purpose

To test whether cca1/lhy double mutant can adjust to change in photoperiod in T-cycle

Comments

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: Millar et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 270213H1_10L10D, 270213H1_IMG_10L10D, BioDare_metadata, RAW 270213H1, Readme, STANDARD_DATAFILE, STANDARD_RAWDATAFILE, Sample_list

Snapshots: No snapshots

Created: 18th Jun 2026 at 14:06, Last updated: 18th Jun 2026 at 14:08

130212H1: 5L15Dx4 LLx3 (T-20)

BioDare1

130212H1: 5L15Dx4 LLx3 (T-20)

Property	Value
BioDare ID	13615471409903
Author	Wei Ven Tee
Institution	University of Edinburgh
License	CC_BY

Description

Plants entrained in 5L 15D Experimental conditions: 5L15Dx4 LLx3

Purpose

To test whether cca1/lhy double mutant can adjust to change in photoperiod in T-cycle

Comments

1.) 2H of L were cut short at the end of the first day of experimental condition (3L17D). 2.) ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: Millar et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 130213H1, 130213H1_entrainment_5L15D, 5L15D_IMG_130213, BioDare_metadata, RAW 130213H1.3, Readme, STANDARD_DATAFILE.3, STANDARD_RAWDATAFILE.3, Sample_list

Snapshots: No snapshots

Created: 18th Jun 2026 at 14:03, Last updated: 18th Jun 2026 at 14:05

060313H1: 5L15Dx4 LLx3 (T-20)

BioDare1

060313H1: 5L15Dx4 LLx3 (T-20)

Property	Value
BioDare ID	13631017726171
Author	Wei Ven Tee
Institution	University of Edinburgh
License	CC_BY

Description

Plants entrained in 5L 15D Experimental conditions: 5L15Dx4 LLx3

Purpose

To test whether cca1/lhy double mutant can adjust to change in photoperiod in T-cycle

Comments

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: Millar et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 060313H1, 060313H1_5L15D, 060313H1_IMG_5L15D, BioDare_metadata, RAW_060313H1, Readme, STANDARD_DATAFILE, STANDARD_RAWDATAFILE, Sample_list

Snapshots: No snapshots

Created: 18th Jun 2026 at 14:00, Last updated: 18th Jun 2026 at 14:03

130313H2: 12F-12Dx4 FFx3

BioDare1

130313H2: 12F-12Dx4 FFx3

Property	Value
BioDare ID	13639713266200
Author	Jamie Carrington
Institution	University of Edinburgh
License	CC_BY

Description

Plants entrained in 12L 12D white light Experimental conditions: 12L-12Dx4 LLx3 (Far-Red)

Purpose

Test how the phytochromes interact with the circadian clock (WT, lhy/cca1 double mutant and lhy/cca1/gi triple mutant)

Comments

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: Millar et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 130313H2, 130313H2_12L12D_x4_LLx3_Far-red, BioDare_metadata, Raw Data, Readme, STANDARD_DATAFILE, STANDARD_RAWDATAFILE, Sample_list

Snapshots: No snapshots

Created: 18th Jun 2026 at 13:57, Last updated: 18th Jun 2026 at 14:00

060313H2: 12F-12Dx4 FFx3

BioDare1

060313H2: 12F-12Dx4 FFx3

Property	Value
BioDare ID	13631095320942
Author	Jamie Carrington
Institution	University of Edinburgh
License	CC_BY

Description

Plants entrained in 12L 12D white light Experimental conditions: 12L-12Dx4 LLx3 (Far-Red)

Purpose

Test how the phytochromes interact with the circadian clock (WT, lhy/cca1 double mutant and lhy/cca1/gi triple mutant)

Comments

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: Millar et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 060313H2, 060313H2 Raw Data, 060313H3_12L12D_x4_LLx3_Far-red, BioDare_metadata, Readme, STANDARD_DATAFILE, STANDARD_RAWDATAFILE, Sample_list

Snapshots: No snapshots

Created: 18th Jun 2026 at 13:55, Last updated: 18th Jun 2026 at 13:57

200313H3: 12L-12Dx4 LLx3

BioDare1

200313H3: 12L-12Dx4 LLx3

Property	Value
BioDare ID	13644021710933
Author	Jamie Carrington
Institution	University of Edinburgh
License	CC_BY

Description

Plants entrained in 12L 12D white light Experimental conditions: 12L-12Dx4 LLx3 ('white')

Purpose

'White' (red+blue) light control experiment for the phytochrome and cryptochrome experiments

Comments

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: Millar et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 200313H3, 200313H3_12L12D_x4_LLx3_White, BioDare_metadata, Raw Data, Readme, STANDARD_DATAFILE, STANDARD_RAWDATAFILE, Sample_list

Snapshots: No snapshots

Created: 18th Jun 2026 at 13:52, Last updated: 18th Jun 2026 at 13:54

270313H3: 12L-12Dx4 LLx3

BioDare1

270313H3: 12L-12Dx4 LLx3

Property	Value
BioDare ID	13650039169340
Author	Jamie Carrington
Institution	University of Edinburgh
License	CC_BY

Description

Plants entrained in 12L 12D white light Experimental conditions: 12L-12Dx4 LLx3 ('white')

Purpose

'White' (red+blue) light control experiment for the phytochrome and cryptochrome experiments

Comments

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: Millar et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 270313H3, 270313H3_12L12D_x4_LLx3_White, BioDare_metadata, Raw Data, Readme, STANDARD_DATAFILE, STANDARD_RAWDATAFILE, Sample_list

Snapshots: No snapshots

Created: 18th Jun 2026 at 13:49, Last updated: 18th Jun 2026 at 13:52

030413H3: 12B-12Dx4 BB3

BioDare1

030413H3: 12B-12Dx4 BB3

Property	Value
BioDare ID	13661271159675
Author	Jamie Carrington
Institution	University of Edinburgh
License	CC_BY

Description

Plants entrained in 12L 12D white light Experimental conditions: 12L-12Dx4 LLx3 (Blue)

Purpose

Test how the cryptochromes interact with the circadian clock (WT, lhy/cca1 double mutant and lhy/cca1/gi triple mutant)

Comments

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: Millar et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 030413H3, 030413H3_12L12D_x4_LLx3_Blue, BioDare_metadata, Raw Data, Readme, STANDARD_DATAFILE, STANDARD_RAWDATAFILE, Sample_list

Snapshots: No snapshots

Created: 18th Jun 2026 at 13:47, Last updated: 18th Jun 2026 at 13:49

060213H3: 12B-12Dx4 BBx3

BioDare1

060213H3: 12B-12Dx4 BBx3

Property	Value
BioDare ID	13615365050841
Author	Jamie Carrington
Institution	University of Edinburgh
License	CC_BY

Description

Plants entrained in 12L 12D white light Experimental conditions: 12L-12Dx4 LLx3 (Blue)

Purpose

Test how the cryptochromes interact with the circadian clock (WT, lhy/cca1 double mutant and lhy/cca1/gi triple mutant)

Comments

Imaging script started at ZT+7mins, therefore ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: Millar et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 060213H3, 060213H3 Raw Data.2, BioDare_metadata, Readme, STANDARD_DATAFILE.2, STANDARD_RAWDATAFILE.2, Sample_list

Snapshots: No snapshots

Created: 18th Jun 2026 at 13:45, Last updated: 18th Jun 2026 at 13:46

200213H3: 12B-12Dx4 BB3

BioDare1

200213H3: 12B-12Dx4 BB3

Property	Value
BioDare ID	13619780272531
Author	Jamie Carrington
Institution	University of Edinburgh
License	CC_BY

Description

Plants entrained in 12L 12D white light Experimental conditions: 12L-12Dx4 LLx3 (Blue)

Purpose

Test how the cryptochromes interact with the circadian clock (WT, lhy/cca1 double mutant and lhy/cca1/gi triple mutant)

Comments

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: Millar et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 200213H3, 200213H3 Raw Data.1, 200213H3_12L12D_x4_LLx3_Blue, BioDare_metadata, Readme, STANDARD_DATAFILE.1, STANDARD_RAWDATAFILE.1, Sample_list

Snapshots: No snapshots

Created: 18th Jun 2026 at 13:42, Last updated: 18th Jun 2026 at 13:44

130213H3: 12R-12Dx4 RRx3

BioDare1

130213H3: 12R-12Dx4 RRx3

Property	Value
BioDare ID	13618784212904
Author	Jamie Carrington
Institution	University of Edinburgh
License	CC_BY

Description

Plants entrained in 12L 12D white light Experimental conditions: 12L-12Dx4 LLx3 (Red)

Purpose

Test how the phytochromes interact with the circadian clock (WT, lhy/cca1 double mutant and lhy/cca1/gi triple mutant)

Comments

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: Millar et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 130213H3, 130213H3 Raw Data corr, 130213H3_12L12D_x4_LLx3_Red, BioDare_metadata, Readme, STANDARD_DATAFILE.2, STANDARD_RAWDATAFILE.2, Sample_list

Snapshots: No snapshots

Created: 18th Jun 2026 at 13:40, Last updated: 18th Jun 2026 at 13:42

270213H3: 12R-12Dx4 RRx3

BioDare1

270213H3: 12R-12Dx4 RRx3

Property	Value
BioDare ID	13630953803730
Author	Jamie Carrington
Institution	University of Edinburgh
License	CC_BY

Description

Plants entrained in 12L 12D white light Experimental conditions: 12L-12Dx4 LLx3 (Red)

Purpose

Test how the phytochromes interact with the circadian clock (WT, lhy/cca1 double mutant and lhy/cca1/gi triple mutant)

Comments

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: Millar et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 270213H3, 270213H3 Raw Data, 270213H3_12L12D_x4_LLx3_Red, BioDare_metadata, Readme, STANDARD_DATAFILE, STANDARD_RAWDATAFILE, Sample_list

Snapshots: No snapshots

Created: 18th Jun 2026 at 13:37, Last updated: 18th Jun 2026 at 13:39

AT0080: 4x18:6-DD

BioDare1

AT0080: 4x18:6-DD

Property	Value
BioDare ID	12730527312073
Author	Adrian Thomson
Institution	University of Edinburgh
License	CC_BY

Description

LUC imaging 18L:6D into constant dark

Purpose

testing phase changes of clock components under different photoperiods

Comments

Pedro prepared by editing groups from previous template

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: Millar et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: AT0080, AT0080, AT0080.1, AT0080BrassDerandomized, BioDare_metadata, Readme, STANDARD_DATAFILE.1, STANDARD_RAWDATAFILE, Sample_list

Snapshots: No snapshots

Created: 18th Jun 2026 at 13:34, Last updated: 18th Jun 2026 at 13:37

AT0048 4x 18:6-DD

BioDare1

AT0048 4x 18:6-DD

Property	Value
BioDare ID	12730752301671
Author	Adrian Thomson
Institution	University of Edinburgh
License	CC_BY

Description

4 days of 18hrs light, 6hrs dark into 3 days constant dark

Purpose

changes to photoperiod

Comments

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: Millar et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: AT0048, AT0048, AT0048.1, AT0048_BRASS, AT0048_BRASSDerandomized, BioDare_metadata, Readme, STANDARD_DATAFILE.1, STANDARD_RAWDATAFILE, Sample_list

Snapshots: No snapshots

Created: 18th Jun 2026 at 13:31, Last updated: 18th Jun 2026 at 13:34

AT0043: 4x 12:12-DD

BioDare1

AT0043: 4x 12:12-DD

Property	Value
BioDare ID	12730739255199
Author	Adrian Thomson
Institution	University of Edinburgh
License	CC_BY

Description

LUC imaging 12:12 blue+red into constant darkness

Purpose

testing acute light responses at dawn and dusk

Comments

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: Millar et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: AT0043, AT0043, AT0043, AT0043.2, AT0043BRASSDerandomized, BioDare_metadata, Readme, STANDARD_DATAFILE.1, STANDARD_RAWDATAFILE, Sample_list

Snapshots: No snapshots

Created: 18th Jun 2026 at 13:28, Last updated: 18th Jun 2026 at 13:31

AT0078: 4x6:18-DD

BioDare1

AT0078: 4x6:18-DD

Property	Value
BioDare ID	12729899933214
Author	Adrian Thomson
Institution	University of Edinburgh
License	CC_BY

Description

LUC imaging 6L:18D into constant dark

Purpose

testing phase changes of clock components under different photoperiods

Comments

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: Millar et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: AT0078, AT0078, AT0078.1, AT0078BrassDerandomized, BioDare_metadata, Readme, STANDARD_DATAFILE.1, STANDARD_RAWDATAFILE, Sample_list

Snapshots: No snapshots

Created: 18th Jun 2026 at 13:24, Last updated: 18th Jun 2026 at 13:27

Assays

Filters ×

270313H1: 21L 7Dx4 LLx3 (T-28)

Description

Purpose

Comments

130313H1: 14L14D x 4 LL x 3 (T-28)

Description

Purpose

Comments

200313H2: 7L 21Dx4 LLx3 (T-28)

Description

Purpose

Comments

200213H1: 15L5D x4 LL x3 (T-20)

Description

Purpose

Comments

290313H2: 15L 5Dx4 LLx3

Description

Purpose

Comments

270213H1: 10L10Dx4 LLx3 (T-20)

Description

Purpose

Comments

130212H1: 5L15Dx4 LLx3 (T-20)

Description

Purpose

Comments

060313H1: 5L15Dx4 LLx3 (T-20)

Description

Purpose

Comments

130313H2: 12F-12Dx4 FFx3

Description

Purpose

Comments

060313H2: 12F-12Dx4 FFx3

Description

Purpose

Comments

200313H3: 12L-12Dx4 LLx3

Description

Purpose

Comments

270313H3: 12L-12Dx4 LLx3

Description

Purpose

Comments

030413H3: 12B-12Dx4 BB3

Description

Purpose

Comments

060213H3: 12B-12Dx4 BBx3

Description

Purpose

Comments

200213H3: 12B-12Dx4 BB3

Description

Purpose

Comments

130213H3: 12R-12Dx4 RRx3

Description

Purpose

Comments

270213H3: 12R-12Dx4 RRx3

Description

Purpose

Comments

AT0080: 4x18:6-DD

Description

Purpose

Comments

AT0048 4x 18:6-DD

Description

Purpose

Comments

AT0043: 4x 12:12-DD

Description

Filters