Collection of experiments created by Hall A on the original BioDare and automatically transferred to FAIRDOM Hub.
SEEK ID: https://fairdomhub.org/investigations/809
Projects: BioDare1
Investigation position:
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Creators and SubmitterViews: 7
Created: 19th Jun 2026 at 14:23
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Projects: Millar group, BioDare1
Institutions: University of Edinburgh, School of Biological Sciences, University of Edinburgh
https://orcid.org/0000-0002-1352-7245
Expertise: Data Management, Python, R, Programming, microscopy, fluorescence protein fusions, Software Engineering
Tools: Data Management, Python, R, Fluorescence and confocal microscopy, Time-lapse fluorescence microscopy Flow cytometry, Fluorecence based reporter gene analyses/single cell analyses
Research Software Engineer in the Biological Research Data Management team (BioRDM) at the University of Edinburgh.
The Centre for Engineering Biology is the University of Edinburgh's research organisation in interdisciplinary, Synthetic and Systems Biology, founded in 2023 as the successor to SynthSys, itself founded in 2012 as the successor to the Centre for Systems Biology at Edinburgh (CSBE). CSBE was newly founded in 2007. The Centre for Engineering Biology is a hub organisation that links across multiple, major funding awards, including an Engineering Biology Mission Hub, and EPSRC C-loop.
Projects: Millar group, PHYTOCAL: Phytochrome Control of Resource Allocation and Growth in Arabidopsis and in Brassicaceae crops, TiMet, POP - the Parameter Optimisation Problem, Regulation of flowering time in natural conditions, PlaSMo model repository, BioDare1
Web page: https://biology.ed.ac.uk/centre-engineering-biology
Experiment data previously hosted on the original version of BioDare (biodare.ed.ac.uk).
Programme: Centre for Engineering Biology (prev. SynthSys)
Public web page: Not specified
Organisms: Not specified
Unpublished
DOI: none
Submitter: Daniel Thedie
Investigation: Hall A
Assays: The TIME FOR COFFEE Gene Maintains the Amplitude and Timing of Arabidops...
Snapshots: No snapshots
The TIME FOR COFFEE Gene Maintains the Amplitude and Timing of Arabidopsis Circadian Clocks
| Property | Value |
|---|---|
| BioDare ID | 13227577822113 |
| Author | Hall A |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
Literature data from: 'The TIME FOR COFFEE gene maintains the amplitude and timing of Arabidopsis circadian clocks' by: Hall A.
Plants synchronize developmental and metabolic processes with the earth’s 24-h rotation ...
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Hall A
Study: Unpublished
Organisms: Arabidopsis thaliana
SOPs: No SOPs
Data files: BioDare_metadata, Readme, STANDARD_DATAFILE.1, STANDARD_RAWDATAFILE.1, Sample_list, hall2003, mbsamples2
Snapshots: No snapshots
hall2003 (from BioDare)
Creator: Hall A
Submitter: Daniel Thedie
Investigations: Hall A
Studies: Unpublished
STANDARD_DATAFILE.1 (from BioDare)
Creator: Hall A
Submitter: Daniel Thedie
Investigations: Hall A
Studies: Unpublished
STANDARD_RAWDATAFILE.1 (from BioDare)
Creator: Hall A
Submitter: Daniel Thedie
Investigations: Hall A
Studies: Unpublished
mbsamples2 (from BioDare)
Creator: Hall A
Submitter: Daniel Thedie
Investigations: Hall A
Studies: Unpublished
List of samples used in the assay (extracted from original BioDare metadata and converted to csv)
Creator: Hall A
Submitter: Daniel Thedie
Investigations: Hall A
Studies: Unpublished
Original BioDare metadata, converted to json format
Creator: Hall A
Submitter: Daniel Thedie
Investigations: Hall A
Studies: Unpublished
Readme file
Creator: Hall A
Submitter: Daniel Thedie
Investigations: Hall A
Studies: Unpublished
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