Collection of experiments created by Kim, W.Y. on the original BioDare and automatically transferred to FAIRDOM Hub.
SEEK ID: https://fairdomhub.org/investigations/821
Projects: BioDare1
Investigation position:
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Creators and SubmitterViews: 7
Created: 19th Jun 2026 at 15:39
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Projects: Millar group, BioDare1
Institutions: University of Edinburgh, School of Biological Sciences, University of Edinburgh
https://orcid.org/0000-0002-1352-7245
Expertise: Data Management, Python, R, Programming, microscopy, fluorescence protein fusions, Software Engineering
Tools: Data Management, Python, R, Fluorescence and confocal microscopy, Time-lapse fluorescence microscopy Flow cytometry, Fluorecence based reporter gene analyses/single cell analyses
Research Software Engineer in the Biological Research Data Management team (BioRDM) at the University of Edinburgh.
The Centre for Engineering Biology is the University of Edinburgh's research organisation in interdisciplinary, Synthetic and Systems Biology, founded in 2023 as the successor to SynthSys, itself founded in 2012 as the successor to the Centre for Systems Biology at Edinburgh (CSBE). CSBE was newly founded in 2007. The Centre for Engineering Biology is a hub organisation that links across multiple, major funding awards, including an Engineering Biology Mission Hub, and EPSRC C-loop.
Projects: Millar group, PHYTOCAL: Phytochrome Control of Resource Allocation and Growth in Arabidopsis and in Brassicaceae crops, TiMet, POP - the Parameter Optimisation Problem, Regulation of flowering time in natural conditions, PlaSMo model repository, BioDare1
Web page: https://biology.ed.ac.uk/centre-engineering-biology
Experiment data previously hosted on the original version of BioDare (biodare.ed.ac.uk).
Programme: Centre for Engineering Biology (prev. SynthSys)
Public web page: Not specified
Organisms: Not specified
Unpublished
DOI: none
Submitter: Daniel Thedie
Investigation: Kim, W.Y.
Assays: Kim et al. (2005); CO, FT; 16L:8D; WT, elf3, Kim2007 ZTL in blue light
Snapshots: No snapshots
Kim et al. (2005); CO, FT; 16L:8D; WT, elf3
| Property | Value |
|---|---|
| BioDare ID | 13790787578160 |
| Author | Kim, W.Y. |
| Institution | Ohio State University |
| License | CC_BY |
Description
Purpose
The circadian clock regulates many aspects of plant development, including hypocotyl elongation and photoperiodic induction of flowering. ZEITLUPE (ZTL) is a clock-related F-box protein, and altered ZTL expression causes fluence rate-dependent circadian ...
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Kim, W.Y.
Study: Unpublished
Organisms: Arabidopsis thaliana
SOPs: No SOPs
Data files: BioDare_metadata, Readme, STANDARD_DATAFILE, STANDARD_RAWDATAFILE, Sample_list, kim2005, kim2005
Snapshots: No snapshots
Kim2007 ZTL in blue light
| Property | Value |
|---|---|
| BioDare ID | 13228247820844 |
| Author | Kim WY |
| Institution | Ohio State University |
| License | CC_BY |
Description
Purpose
time courses of TOC1, GI and ZTL proteins in 12:12
Comments
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Kim, W.Y.
Study: Unpublished
Organisms: Arabidopsis thaliana
SOPs: No SOPs
Data files: BioDare_metadata, Kim2007_wt_LD_TOC1_GI_ZTL_proteins, Kim_Nature07, Kim_Nature07_suppl_tex, Readme, STANDARD_DATAFILE, STANDARD_RAWDATAFILE, Sample_list
Snapshots: No snapshots
Kim_Nature07_suppl_tex (from BioDare)
Creator: Kim WY
Submitter: Daniel Thedie
Kim_Nature07 (from BioDare)
Creator: Kim WY
Submitter: Daniel Thedie
STANDARD_DATAFILE (from BioDare)
Creator: Kim WY
Submitter: Daniel Thedie
STANDARD_RAWDATAFILE (from BioDare)
Creator: Kim WY
Submitter: Daniel Thedie
Kim2007_wt_LD_TOC1_GI_ZTL_proteins (from BioDare)
Creator: Kim WY
Submitter: Daniel Thedie
List of samples used in the assay (extracted from original BioDare metadata and converted to csv)
Creator: Kim WY
Submitter: Daniel Thedie
Original BioDare metadata, converted to json format
Creator: Kim WY
Submitter: Daniel Thedie
Readme file
Creator: Kim WY
Submitter: Daniel Thedie
kim2005 (from BioDare)
Creator: Kim, W.Y.
Submitter: Daniel Thedie
STANDARD_DATAFILE (from BioDare)
Creator: Kim, W.Y.
Submitter: Daniel Thedie
STANDARD_RAWDATAFILE (from BioDare)
Creator: Kim, W.Y.
Submitter: Daniel Thedie
kim2005 (from BioDare)
Creator: Kim, W.Y.
Submitter: Daniel Thedie
List of samples used in the assay (extracted from original BioDare metadata and converted to csv)
Creator: Kim, W.Y.
Submitter: Daniel Thedie
Original BioDare metadata, converted to json format
Creator: Kim, W.Y.
Submitter: Daniel Thedie
Readme file
Creator: Kim, W.Y.
Submitter: Daniel Thedie
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