cca1 lhy Long #1 CCA1 marker
cca1 lhy Long #1 CCA1 marker
| Property | Value |
|---|---|
| BioDare ID | 3638 |
| Author | Victoria Hibberd |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
If periods change during development, then our genetic screens for preiod-altering clock mutants might recover developmental mutants. Leaf movement assays suggestted that period might change. Ten-day data collections in the TopCount were intended to test for such period changes using luciferase. The lhy cca1 mutant was of particular interest, as it had a very short period to start with - was this perhaps rescued in older plants? In fact, ultradian rhythms were revealed..
Purpose
Test for period changes during seedlling growth in the TopCount, in WT and cca lhy double mutants
Comments
Data collection by Victoria Hibberd ca. September 2003; files found by Andrew Millar in 2012, reanalysed on sabbatical in 2015.
SEEK ID: https://fairdomhub.org/assays/3070
Experimental assay
Projects: BioDare1
Investigation: Hibberd Victoria
Study: Unpublished
Assay position:
Assay type: Experimental Assay Type
Technology type: Technology Type
Organisms: Arabidopsis thaliana
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Created: 19th Jun 2026 at 15:44
Last updated: 9th Sep 2026 at 08:26
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https://orcid.org/0000-0002-1352-7245Research Software Engineer in the Biological Research Data Management team (BioRDM) at the University of Edinburgh.
The Centre for Engineering Biology is the University of Edinburgh's research organisation in interdisciplinary, Synthetic and Systems Biology, founded in 2023 as the successor to SynthSys, itself founded in 2012 as the successor to the Centre for Systems Biology at Edinburgh (CSBE). CSBE was newly founded in 2007. The Centre for Engineering Biology is a hub organisation that links across multiple, major funding awards, including an Engineering Biology Mission Hub, and EPSRC C-loop.
Projects: Millar group, PHYTOCAL: Phytochrome Control of Resource Allocation and Growth in Arabidopsis and in Brassicaceae crops, TiMet, POP - the Parameter Optimisation Problem, Regulation of flowering time in natural conditions, PlaSMo model repository, BioDare1
Web page: https://biology.ed.ac.uk/centre-engineering-biology
Experimental data that were previously hosted on the original version of BioDare (biodare.ed.ac.uk), which opened in 2009, please see https://doi.org/10.1007/978-1-4939-0700-7_2. BioDare was designed as a repository of rhythmic biological data, especially for 24-hour circadian rhythms, with specialised analytical routines for period, phase and amplitude estimation on each data timeseries. Most rhythms tested were measured using gene expression, either directly as RNA levels, or indirectly using ...
Programme: Centre for Engineering Biology (prev. SynthSys)
Public web page: https://biodare2.ed.ac.uk
Start date: 7th Jul 2006
End date: 21st Dec 2017
Collection of experiments created by Hibberd Victoria on the original BioDare and automatically transferred to FAIRDOM Hub.
Submitter: Daniel Thedie
Studies: Unpublished
Assays: cca1 lhy Long #1 CAB2 marker, cca1 lhy Long #1 CCA1 marker, cca1 lhy Long #1 CCR2 marker
Unpublished
DOI: none
Submitter: Daniel Thedie
Investigation: Hibberd Victoria
Assays: cca1 lhy Long #1 CAB2 marker, cca1 lhy Long #1 CCA1 marker, cca1 lhy Long #1 CCR2 marker
File exported from BioDare Period Phase Analysis (PPA)
File exported from BioDare Period Phase Analysis (PPA)
File exported from BioDare Period Phase Analysis (PPA)
File exported from BioDare Period Phase Analysis (PPA)
File exported from BioDare Period Phase Analysis (PPA)
File exported from BioDare Period Phase Analysis (PPA)
File exported from BioDare Period Phase Analysis (PPA)
File exported from BioDare Period Phase Analysis (PPA)
File exported from BioDare Period Phase Analysis (PPA)
File exported from BioDare Period Phase Analysis (PPA)
Plate1116 #1-CCA1 for BioDare.1 (from BioDare)
List of samples used in the assay (extracted from original BioDare metadata and converted to csv)
Original BioDare metadata, converted to json format
Readme file
