SOPs

What is a SOP?

210 SOPs visible to you, out of a total of 210

P.KAM-240129-V1_Monocyte-Isolation-iVas.docx

MetNet

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MetNet

Studies: Patient-specific vascularized tumor model: Bloc...

Assays: Cell Culture and Tumor Spheroid Creation - Meta...

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Created: 9th Feb 2024 at 18:03

P.KAM-240129-V1_Cell-Culture-and-Tumor-Spheroid-Creation-iVas.docx

MetNet

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MetNet

Studies: Patient-specific vascularized tumor model: Bloc...

Assays: Cell Culture and Tumor Spheroid Creation - Meta...

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Created: 9th Feb 2024 at 18:03

P.ALT-231201-V1_Study_Design-ACS-GC6.docx

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Age and sex influence antibody profiles associa...

Assays: Patient Visit - Metadata, Tissue Collection - Metadata

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Created: 1st Dec 2023 at 21:31, Last updated: 18th Jan 2024 at 19:18

P.ALT-231031-V1_ACS_GC6_FCRB-TITR.docx

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Age and sex influence antibody profiles associa...

Assays: FC Receptor Binding Assay - Data Linked, Titer Assay - Data Linked

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Created: 1st Dec 2023 at 21:32, Last updated: 18th Jan 2024 at 19:18

P.ALT-231031-V1_ACS_ADCP.docx

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Age and sex influence antibody profiles associa...

Assays: Antibody-Dependent Cellular Phagocytosis - Data...

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Created: 1st Dec 2023 at 21:33, Last updated: 18th Jan 2024 at 19:18

P.ALT-231031-V1_ACS_ADNP.docx

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Age and sex influence antibody profiles associa...

Assays: Antibody-Dependent Neutrophil Phagocytosis - Da...

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Created: 1st Dec 2023 at 21:34, Last updated: 18th Jan 2024 at 19:18

P.GRI-230228-V1_2.4-Linear-Mixed-Model-for-Proteomics-Data

Endometriosis

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: Endometriosis

Studies: Integrating endometrial proteomic and single ce...

Assays: Linear Mixed Model - Data Linked

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Created: 7th Nov 2023 at 20:39, Last updated: 17th Nov 2023 at 21:43

P.GRI-231101-V1_scRNA_Protocol

Endometriosis

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: Endometriosis

Studies: Integrating endometrial proteomic and single ce...

Assays: DNA Extraction - Metadata, Single Cell Sequencing - Data Linked

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Created: 3rd Nov 2023 at 18:52, Last updated: 17th Nov 2023 at 21:43

P.GRI-230228-V1_2.3-Tissue-Preparation-for-Proteomics-and-Running-the-LC-MSMS

Endometriosis

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: Endometriosis

Studies: Integrating endometrial proteomic and single ce...

Assays: Mass Spectrometry Proteomics - Data Linked, Mass Spectrometry Proteomics Analysis - Data Li...

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Created: 7th Nov 2023 at 16:40, Last updated: 17th Nov 2023 at 21:43

P.GRI-230228-V1_2.7-Tissue-Sectioning,-Staining,-and-Quantification

Endometriosis

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: Endometriosis

Studies: Integrating endometrial proteomic and single ce...

Assays: Immunohistochemistry - Data Linked

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Created: 7th Nov 2023 at 18:03, Last updated: 17th Nov 2023 at 21:43

P.GRI-231107-V1_Computational-analyses-of-scRNA-seq-data.docx

Endometriosis

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: Endometriosis

Studies: Integrating endometrial proteomic and single ce...

Assays: Single Cell Expression Matrix Analysis - Data L...

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Created: 7th Nov 2023 at 20:14, Last updated: 17th Nov 2023 at 21:43

P.GRI-231103-V1_ELISA_Luminex_Protocol

Endometriosis

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: Endometriosis

Studies: Organoid co-culture model of the cycling human ...

Assays: Elisa - Data Linked

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Created: 3rd Nov 2023 at 20:30, Last updated: 17th Nov 2023 at 21:20

P.GRI-231107-V1_Bulk-RNAseq-analysis-of-in-vitro-co-cultures.docx

Endometriosis

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: Endometriosis

Studies: Organoid co-culture model of the cycling human ...

Assays: Gene Expression Analysis - Data Linked

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Created: 7th Nov 2023 at 20:10, Last updated: 17th Nov 2023 at 21:20

P.GRI-230228-V1_2.1-Study-Approval.docx

Endometriosis

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: Endometriosis

Studies: Integrating endometrial proteomic and single ce..., Organoid co-culture model of the cycling human ...

Assays: Patient Visit - Metadata, Patient Visit - Metadata, Tissue Collection - Metadata, Tissue Collection - Metadata

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Created: 3rd Nov 2023 at 14:14, Last updated: 17th Nov 2023 at 21:20

P.GRI-231030-V1_Tissue_Protocol

Endometriosis

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: Endometriosis

Studies: Integrating endometrial proteomic and single ce..., Organoid co-culture model of the cycling human ...

Assays: Tissue Collection - Metadata, Tissue Collection - Metadata

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Created: 3rd Nov 2023 at 14:52, Last updated: 17th Nov 2023 at 21:20

P.GRI-231030-V1_Cell_Culture_and_Organoid_Generation_Protocol.docx

Endometriosis

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: Endometriosis

Studies: Organoid co-culture model of the cycling human ...

Assays: Cell Culture and Organoid Generation - Metadata

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Created: 3rd Nov 2023 at 15:22, Last updated: 17th Nov 2023 at 21:20

P.GRI-231101-V1_RNA-isolation-and-bulk-RNA-seq

Endometriosis

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: Endometriosis

Studies: Organoid co-culture model of the cycling human ...

Assays: DNA Extraction - Metadata, Short Read Sequencing - Data Linked

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Created: 3rd Nov 2023 at 19:14, Last updated: 17th Nov 2023 at 21:20

P.GRI-231030-V4_Imaging_Protocol

Endometriosis

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: Endometriosis

Studies: Organoid co-culture model of the cycling human ...

Assays: Cell Culture Imaging - Data Linked

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Created: 7th Nov 2023 at 18:21

P.ENG-230913-V1_In-Vivo-Comet-Chip---MUS.docx

MIT SRP

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Novel In Vivo CometChip Reveals NDMA-Induced DN...

Assays: Chemical Challenge - Metadata, Tissue Collection - Metadata

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Created: 13th Sep 2023 at 16:43, Last updated: 3rd Nov 2023 at 14:00

P.ENG-230912-V1_MMS-and-NDMA-TIS.docx

MIT SRP

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Novel In Vivo CometChip Reveals NDMA-Induced DN...

Assays: Tissue Collection - Metadata

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Created: 13th Sep 2023 at 17:22, Last updated: 3rd Nov 2023 at 14:00

P.ENG-230912-V1_Cell-Culture.docx

MIT SRP

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Novel In Vivo CometChip Reveals NDMA-Induced DN...

Assays: Comet Chip - Data Linked

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Created: 13th Sep 2023 at 17:25, Last updated: 3rd Nov 2023 at 14:00

P.ENG-230912-V1_In-Vivo-Comet-Assay-Protocol.docx

MIT SRP

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Novel In Vivo CometChip Reveals NDMA-Induced DN...

Assays: Comet Chip - Data Linked, Comet Chip Analysis - Data Attached

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Created: 13th Sep 2023 at 17:26, Last updated: 3rd Nov 2023 at 14:00

P.WHI-210301-V1_Tissue_Lysis_Protocol

MIT SRP

No description specified

Creator: Dikshant Pradhan

Submitter: Dikshant Pradhan

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

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Created: 30th Mar 2021 at 16:37, Last updated: 3rd Nov 2023 at 14:00

P.WHI-200519-V1_Mass_spectrometry_data_processing_protocol

MIT SRP

No description specified

Creator: Dikshant Pradhan

Submitter: Dikshant Pradhan

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

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Created: 30th Mar 2021 at 16:41, Last updated: 3rd Nov 2023 at 14:00

P.WHI-200519-V1_Bottom_up_proteomics_protocol

MIT SRP

No description specified

Creator: Dikshant Pradhan

Submitter: Dikshant Pradhan

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

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Created: 30th Mar 2021 at 17:05, Last updated: 3rd Nov 2023 at 14:00

P.ENG-230913-V1_Chemicals-and-Reagents.docx

MIT SRP

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Novel In Vivo CometChip Reveals NDMA-Induced DN...

Assays: Chemical Challenge - Metadata

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Created: 13th Sep 2023 at 16:31, Last updated: 3rd Nov 2023 at 14:00

P.FOR-230503-V1_Barcoding-Whole-Genome-Sequencing-Protocol.docx

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: CD8+ lymphocytes are critical for early control...

Assays: Short Read Sequencing - Data Linked

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Created: 20th Oct 2023 at 15:51, Last updated: 20th Oct 2023 at 19:43

P.FOR-231020-V1_DBMM-Analysis-CD8.docx

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: CD8+ lymphocytes are critical for early control...

Assays: Digitally Barcoded Mtb Matrix Analysis - Data A...

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Created: 20th Oct 2023 at 15:53, Last updated: 20th Oct 2023 at 19:43

P.FLY-231011_Patient Visit CD8

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: CD8+ lymphocytes are critical for early control...

Assays: Patient Visit - Metadata, Tissue Collection - Metadata

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Created: 11th Oct 2023 at 18:33, Last updated: 12th Oct 2023 at 01:04

P.FOR-231011_Bacterial Extraction

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: CD4+ T cells re-wire granuloma cellularity and ..., CD8+ lymphocytes are critical for early control..., Intravenous BCG-mediated protection against tub..., Protection against reinfection with Mycobacteri...

Assays: Bacterial Extraction - Metadata, Bacterial Extraction - Metadata, Bacterial Extraction - Metadata, Bacterial Extraction - Metadata

Created: 11th Oct 2023 at 19:22, Last updated: 12th Oct 2023 at 01:04

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