SOPs

What is a SOP?

154 SOPs visible to you, out of a total of 159

P.FOR-230503-V1_Barcoding-Whole-Genome-Sequencing-Protocol.docx

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: CD8+ lymphocytes are critical for early control...

Assays: Short Read Sequencing - Data Linked

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Created: 20th Oct 2023 at 15:51, Last updated: 20th Oct 2023 at 19:43

P.FOR-231020-V1_DBMM-Analysis-CD8.docx

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: CD8+ lymphocytes are critical for early control...

Assays: Digitally Barcoded Mtb Matrix Analysis - Data A...

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Created: 20th Oct 2023 at 15:53, Last updated: 20th Oct 2023 at 19:43

P.FLY-231011_Patient Visit CD8

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: CD8+ lymphocytes are critical for early control...

Assays: Patient Visit - Metadata, Tissue Collection - Metadata

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Created: 11th Oct 2023 at 18:33, Last updated: 12th Oct 2023 at 01:04

P.FOR-231011_Bacterial Extraction

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: CD4+ T cells re-wire granuloma cellularity and ..., CD8+ lymphocytes are critical for early control..., Intravenous BCG-mediated protection against tub...

Assays: Bacterial Extraction - Metadata, Bacterial Extraction - Metadata, Bacterial Extraction - Metadata

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Created: 11th Oct 2023 at 19:22, Last updated: 12th Oct 2023 at 01:04

P.FOR-230503-V1_Barcoding_Amplicon_Feb2023

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: CD4+ T cells re-wire granuloma cellularity and ..., CD8+ lymphocytes are critical for early control..., Intravenous BCG-mediated protection against tub...

Assays: DNA Extraction - Metadata, Library Prep - Metadata, Library Prep - Metadata, Short Read Sequencing - Data Linked, Short Read Sequencing - Data Linked, Short Read Sequencing - Data Linked

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Created: 11th Oct 2023 at 19:33, Last updated: 12th Oct 2023 at 01:04

P.FLY-230509-V1_CD8-NX-Protocol

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: CD8+ lymphocytes are critical for early control...

Assays: Flow Cytometry - Data Linked

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Created: 12th Oct 2023 at 00:25, Last updated: 12th Oct 2023 at 01:04

P.FLY-230911-V1_IHC-CD8 Depletion

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: CD8+ lymphocytes are critical for early control...

Assays: Immunohistochemistry - Data Linked

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Created: 12th Oct 2023 at 00:49, Last updated: 12th Oct 2023 at 01:04

P.FLY-230523-V1_PET_CT_Imaging

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: CD4+ T cells re-wire granuloma cellularity and ..., CD8+ lymphocytes are critical for early control..., Multi-modal data integration using Markov Field...

Assays: PET-CT Scan - Data Linked, PET/CT Scan - Data Linked, PET/CT Scan - Data Linked

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Created: 12th Oct 2023 at 00:54, Last updated: 12th Oct 2023 at 01:04

P.SES-230405-V1_JP_Flow_Protocol.docx

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Specific CD4+ T cell phenotypes associate with ...

Assays: Flow Cytometry - Data Linked

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Created: 17th May 2023 at 20:44, Last updated: 17th May 2023 at 20:47

P.BOO-230324-V1_KC_Protocol

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Specific CD4+ T cell phenotypes associate with ...

Assays: Patient Visit - Metadata, Tissue Collection - Metadata

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Created: 17th May 2023 at 20:46, Last updated: 17th May 2023 at 20:47

P.KAM-230131-V1_cancer-cell-perfusion-and-extravasation-analysis.docx

MetNet

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MetNet

Studies: Impact of fibrinogen, fibrin thrombi and thromb...

Assays: Cancer Cell Extravasation Analysis - Data Linked

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Created: 16th May 2023 at 18:15, Last updated: 16th May 2023 at 18:27

P.KAM-230131-V1_clot-generate-and-image-analysis.docx

MetNet

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MetNet

Studies: Impact of fibrinogen, fibrin thrombi and thromb...

Assays: Clot Modeling Analysis - Data Linked

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Created: 16th May 2023 at 18:17, Last updated: 16th May 2023 at 18:27

P.KAM-230131-V1_OOC-protocol-device-and-network-creation.docx

MetNet

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MetNet

Studies: Impact of fibrinogen, fibrin thrombi and thromb...

Assays: Microfluidic Device Creation - Metadata

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Created: 16th May 2023 at 18:11, Last updated: 16th May 2023 at 18:25

P.KAM-230131-V1_Confocal-imaging.docx

MetNet

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MetNet

Studies: Impact of fibrinogen, fibrin thrombi and thromb...

Assays: Device Imaging - Data Linked, Permeability Analysis - Data Linked

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Created: 16th May 2023 at 18:14, Last updated: 16th May 2023 at 18:25

P.KAM-230131-V1_Flow.docx

MetNet

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MetNet

Studies: Impact of fibrinogen, fibrin thrombi and thromb...

Assays: Flow Cytometry - Data Linked, Flow Cytometry Analysis - Data Linked

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Created: 16th May 2023 at 18:18, Last updated: 16th May 2023 at 18:25

P.KAM-230131-V1_Cell-culture.docx

MetNet

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MetNet

Studies: Impact of fibrinogen, fibrin thrombi and thromb..., Patient-specific vascularized tumor model: Bloc..., Personalized Vascularized Models of Breast Canc..., Polyploidy of MDA-MB-231 cells drives increased..., Utilizing convolutional neural networks for dis...

Assays: Cell Culture - Metadata, Cell Culture and Tumor Spheroid Creation - Meta..., Cell Culture and Tumor Spheroid Creation - Meta..., Microfluidic Device Creation - Metadata, Tumoroid Formation - Metadata

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Created: 16th May 2023 at 18:10, Last updated: 16th May 2023 at 18:25

P.BOO-230324-V1_KC_Protocol

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Immune cells in bronchoalveolar lavage fluid of...

Assays: Patient Visit – Metadata, Tissue Collection - Metadata

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Created: 27th Mar 2023 at 21:38, Last updated: 30th Mar 2023 at 22:45

P.BOO-230324-V1_2016_Nov_04_Bronchoscopy_Protocol_vers1.0

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Immune cells in bronchoalveolar lavage fluid of...

Assays: Patient Visit – Metadata, Tissue Collection - Metadata

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Created: 27th Mar 2023 at 21:35, Last updated: 30th Mar 2023 at 22:45

P.BOO-230324-V1_2018_June_Bronchoscopy_Protocol_vers2.0

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Immune cells in bronchoalveolar lavage fluid of...

Assays: Patient Visit – Metadata, Tissue Collection - Metadata

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Created: 27th Mar 2023 at 21:37, Last updated: 30th Mar 2023 at 22:45

P.BOO-230324-V1_2019_April_Bronchoscopy_Protocol_vers4.0

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Immune cells in bronchoalveolar lavage fluid of...

Assays: Patient Visit – Metadata, Tissue Collection - Metadata

Download

Created: 27th Mar 2023 at 21:37, Last updated: 30th Mar 2023 at 22:45

P.BOO-230324-V1_2020_Jan_Bronchoscopy_Protocol_vers4.0

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Immune cells in bronchoalveolar lavage fluid of...

Assays: Patient Visit – Metadata, Tissue Collection - Metadata

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Created: 27th Mar 2023 at 21:38, Last updated: 30th Mar 2023 at 22:45

P.SWA-230302-V1_Jeol-Accu-ToF_05252022

MIT SRP

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Interaction of N-Nitroamines with Bincuelar Cop...

Assays: High Resolution Mass Spectra - Data Linked

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Created: 16th Mar 2023 at 17:16, Last updated: 16th Mar 2023 at 17:24

P.SWA-230223-V1_synthesis-protocol

MIT SRP

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Interaction of N-Nitroamines with Bincuelar Cop...

Assays: Chemical Synthesis - Metadata

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Created: 16th Mar 2023 at 17:13, Last updated: 16th Mar 2023 at 17:23

P.SWA-230302-V1_Fluorescence-and-XPS

MIT SRP

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Interaction of N-Nitroamines with Bincuelar Cop...

Assays: Absorption and Emission Spectroscopy - Data Linked, X-ray Photoelectron Spectroscopy - Data Linked

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Created: 16th Mar 2023 at 17:14, Last updated: 16th Mar 2023 at 17:23

P.SWA-230302-V1_Mass-Spectrometry

MIT SRP

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Interaction of N-Nitroamines with Bincuelar Cop...

Assays: High Resolution Mass Spectra - Data Linked

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Created: 16th Mar 2023 at 17:15, Last updated: 16th Mar 2023 at 17:23

P.SWA-230302-V1_NMR

MIT SRP

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Interaction of N-Nitroamines with Bincuelar Cop...

Assays: Nuclear Magnetic Resonance Spectroscopy - Data ...

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Created: 16th Mar 2023 at 17:17, Last updated: 16th Mar 2023 at 17:23

P.ESS-201123-V1_gpt-NextGen-Protocol-.pdf

MIT SRP

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Molecular origins of mutational spectra produce...

Assays: GPT Assay - Data Attached

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Created: 8th Mar 2023 at 19:27, Last updated: 8th Mar 2023 at 22:52

P.ESS-230303-V1_Data-processing-(alignment).docx

MIT SRP

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Molecular origins of mutational spectra produce...

Assays: Genome Alignment - Data Linked, Mutational Spectral Analysis - Data Attached

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Created: 8th Mar 2023 at 19:32, Last updated: 8th Mar 2023 at 22:52

P.ESS-230303-V2_Cell-culture.docx

MIT SRP

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Molecular origins of mutational spectra produce...

Assays: Extraction and Library Creation - Metadata

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Created: 8th Mar 2023 at 19:28, Last updated: 8th Mar 2023 at 22:52

P.ESS-230308-V2_Duplex-sequencing.docx

MIT SRP

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MIT SRP

Studies: Molecular origins of mutational spectra produce...

Assays: Illumina Sequencing - Data Linked

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Created: 8th Mar 2023 at 19:30, Last updated: 8th Mar 2023 at 22:52

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