SOPs

What is a SOP?

206 SOPs visible to you, out of a total of 206

P.BAC-250422-V1_Hi-C_ChromatinConformation.docx

MetNet

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MetNet

Studies: Chromatin conformation, gene transcription, and...

Assays: Chromatin Sequencing Analysis - Data Linked, Library Creation - Metadata, Short Read Sequencing - Data Linked

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Created: 24th Apr 2025 at 17:50

P.BAC-250422-V1_SMLM_ChromatinConformation.docx

MetNet

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MetNet

Studies: Chromatin conformation, gene transcription, and...

Assays: Cell Imaging - Data Linked, Imaging Analysis - Data Linked

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Created: 24th Apr 2025 at 17:45

P.BAC-250422-V1_PWS_ChromatinConformation.docx

MetNet

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MetNet

Studies: Chromatin conformation, gene transcription, and...

Assays: Cell Imaging - Data Linked, Imaging Analysis - Data Linked

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Created: 24th Apr 2025 at 17:43

P.BAC-250422-V1_ChromatinElectronMicroscopy_ChromatinConformation.docx

MetNet

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MetNet

Studies: Chromatin conformation, gene transcription, and...

Assays: Cell Imaging - Data Linked, Imaging Analysis - Data Linked

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Created: 24th Apr 2025 at 17:41

P.BAC-250422-V1_CellCulture_ChromatinConformation.docx

MetNet

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: MetNet

Studies: Chromatin conformation, gene transcription, and...

Assays: Cell Culture - Metadata

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Created: 24th Apr 2025 at 17:37

P.ALT-241202-V1_LAM_ELISA.docx

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Antibody-Fab and -Fc features promote Mycobacte...

Assays: ELISA Assay - Data Linked

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Created: 23rd Apr 2025 at 17:01, Last updated: 23rd Apr 2025 at 19:35

P.ALT-241202-V1_Protocol_lmx_FcgR_assay.docx

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Antibody-Fab and -Fc features promote Mycobacte...

Assays: FC-Receptor Binding Assay - Data Linked

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Created: 23rd Apr 2025 at 17:04, Last updated: 23rd Apr 2025 at 19:35

P.ALT-241204-V1_Protocol_lmx_comp_deposition_assay.docx

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Antibody-Fab and -Fc features promote Mycobacte...

Assays: ADCD Analysis - Data Linked, Antibody Dependent Complement Deposition - Data...

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Created: 23rd Apr 2025 at 18:03, Last updated: 23rd Apr 2025 at 19:35

P.ALT-250418-V1_Protocol_mtb_restriction_assay_PatGrace.docx

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Antibody-Fab and -Fc features promote Mycobacte...

Assays: Bacterial Survivability Restriction Assay - Dat..., Cell Extraction - Metadata, Cell Sorting – Data Linked

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Created: 23rd Apr 2025 at 16:42, Last updated: 23rd Apr 2025 at 19:35

P.ALT-250314-V1_scRNA_PG.docx

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Antibody-Fab and -Fc features promote Mycobacte...

Assays: Cell Extraction - Metadata, Short Read Sequencing - Data Linked

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Created: 23rd Apr 2025 at 16:44, Last updated: 23rd Apr 2025 at 19:35

P.ALT-250314-V1_Analysis-of-infection-scRNA.docx

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Antibody-Fab and -Fc features promote Mycobacte...

Assays: Single Cell Clustering - Data Linked

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Created: 23rd Apr 2025 at 17:59, Last updated: 23rd Apr 2025 at 19:35

P.ALT-241112-V1_Protocol_flow_staining.docx

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Antibody-Fab and -Fc features promote Mycobacte...

Assays: Flow Cytometry - Data Linked, Flow Cytometry Analysis - Data Linked, Mouse Challenge – Metadata

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Created: 23rd Apr 2025 at 16:32, Last updated: 23rd Apr 2025 at 19:35

P.ALT-241112-V1_Antibody_cloning_and_expression.docx

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Antibody-Fab and -Fc features promote Mycobacte...

Assays: Mouse Challenge – Metadata

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Created: 23rd Apr 2025 at 16:34, Last updated: 23rd Apr 2025 at 19:35

P.ALT-241105-V1_Protocol_phagocytic_assays_BM_cells.docx

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Antibody-Fab and -Fc features promote Mycobacte...

Assays: Antibody Dependent Functional Profiling - Data ..., Cell Extraction - Metadata, Cell Sorting – Data Linked

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Created: 23rd Apr 2025 at 16:39, Last updated: 23rd Apr 2025 at 19:35

P.ALT-241112-V1_Bacterial_Strains

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Antibody-Fab and -Fc features promote Mycobacte...

Assays: Mouse Challenge – Metadata

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Created: 23rd Apr 2025 at 16:25, Last updated: 23rd Apr 2025 at 19:35

P.BRY-250327-V1_scRNAseq.docx

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Systematic deconstruction of myeloid cell signa...

Assays: Library Creation - Metadata, Short Read Sequencing - Data Linked

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Created: 27th Mar 2025 at 19:58, Last updated: 28th Mar 2025 at 17:32

P.BRY-250325-V1_systematic_SEQ_analysis.docx

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Systematic deconstruction of myeloid cell signa...

Assays: Gene Expression Analysis - Data Linked, Single Cell Expression Analysis - Data Linked

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Created: 27th Mar 2025 at 20:00, Last updated: 28th Mar 2025 at 17:32

P.BRY-241219-V1_HMDM-Protocol.docx

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Systematic deconstruction of myeloid cell signa...

Assays: Cell Isolation - Metadata, Library Creation - Metadata, Short Read Sequencing - Data Linked, Tissue Collection - Metadata

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Created: 27th Mar 2025 at 20:03, Last updated: 28th Mar 2025 at 17:32

P.BRY-250327-V1_NHP_Protocol.docx

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Systematic deconstruction of myeloid cell signa...

Assays: Patient Visit - Metadata, Tissue Collection - Metadata

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Created: 27th Mar 2025 at 19:43, Last updated: 28th Mar 2025 at 17:32

P.WHI-250319-V1_SureQuant_Protocol.pdf

Cancer Systems Biology Consortium (CSBC)

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: CSBC

Studies: Validation and quantification of peptide antige...

Assays: ImmunoPeptideomics - Data Linked, SureQuant Analysis - Data Linked

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Created: 19th Mar 2025 at 18:03

P.WHI-250319-V1_SureQuant_SampleProcessing.docx

Cancer Systems Biology Consortium (CSBC)

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: CSBC

Studies: Validation and quantification of peptide antige...

Assays: Sample Processing - Metadata

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Created: 19th Mar 2025 at 18:02

P.SAS-240923-V1_RSTR_scRNA-CITESEQ.docx

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Comparable Non-canonical T cell responses are a...

Assays: CITESEQ Analysis - Data Linked, Library Prep - Metadata, Short Read Sequencing - Data Linked

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Created: 23rd Sep 2024 at 18:30, Last updated: 25th Feb 2025 at 21:01

P.SAS-241009-V1_TransCompR-Protocol.docx

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Comparable Non-canonical T cell responses are a...

Assays: Model Validation - Data Linked

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Created: 9th Oct 2024 at 18:46, Last updated: 25th Feb 2025 at 21:01

P.SAS-250124-V1_Histology-Protocol.docx

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Comparable Non-canonical T cell responses are a...

Assays: Histology - Data Linked

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Created: 24th Jan 2025 at 20:46, Last updated: 25th Feb 2025 at 21:01

P.SAS-240923-V1_RSTR_Mice_SOP.docx

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Comparable Non-canonical T cell responses are a...

Assays: Pathogen Challenge and Antibody Depletion - Met..., Tissue Collection - Metadata

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Created: 23rd Sep 2024 at 17:04, Last updated: 25th Feb 2025 at 21:01

P.SAS-240827-V1_RSTR_BMDM_protocol.docx

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Comparable Non-canonical T cell responses are a...

Assays: Cell Isolation - Metadata

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Created: 23rd Sep 2024 at 17:44, Last updated: 25th Feb 2025 at 21:01

P.SAS-220203-V1_Flow-protocol-for-SEEK.docx

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Comparable Non-canonical T cell responses are a...

Assays: Flow Cytometry - Data Linked

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Created: 23rd Sep 2024 at 17:52, Last updated: 25th Feb 2025 at 21:01

P.SAS-240923-V1_RSTR_Flow_Analysis.docx

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Comparable Non-canonical T cell responses are a...

Assays: Flow Cytometry Analysis - Data Linked

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Created: 23rd Sep 2024 at 18:22, Last updated: 25th Feb 2025 at 21:01

P.SAS-241120-V1_RNAseq-Protocol.docx

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Systems-level computational translation of mous...

Assays: Library Prep: Validation Data - Metadata, RNA Extraction: Validation Data - Metadata, Short Read Sequencing: Validation Data - Data L...

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Created: 5th Feb 2025 at 19:39, Last updated: 5th Feb 2025 at 23:00

P.SAS-241121-V1_qPCR-Protocol.docx

Hi-IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Systems-level computational translation of mous...

Assays: PCR: Validation Data - Data Attached

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Created: 5th Feb 2025 at 20:02, Last updated: 5th Feb 2025 at 23:00

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