Assays

What is an Assay?

309 Assays visible to you, out of a total of 309

Cell Culture - Metadata

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Polyploidy of MDA-MB-231 cells drives increased...

Organisms: No organisms

SOPs: P.KAM-230131-V1_Cell-culture.docx, P.KAM-240712_V1_GFP_CellCulture.docx

Data files: samples-publishGFP_CEL.xlsx, samples-publishGFP_CEL.xlsx

Snapshots: No snapshots

Created: 12th Jul 2024 at 17:30, Last updated: 15th Jan 2025 at 19:09

Cancer Cell Extravasation Analysis - Data Linked

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Polyploidy of MDA-MB-231 cells drives increased...

Organisms: No organisms

SOPs: P.KAM-240712_V1_GFP_Extravasation.docx

Data files: samples-publishGFP_A.CCE.xlsx, samples-publishGFP_D.IMG.xlsx

Snapshots: No snapshots

Created: 12th Jul 2024 at 17:34, Last updated: 15th Jan 2025 at 19:09

Cell Culture and Tumor Spheroid Creation - Metadata

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Patient-specific vascularized tumor model: Bloc...

Organisms: No organisms

SOPs: P.KAM-230131-V1_Cell-culture.docx, P.KAM-240129-V1_Cell-Culture-and-Tumor-Spheroid..., P.KAM-240129-V1_Monocyte-Isolation-iVas.docx

Data files: samples-publish2024-02-09-CEL.xlsx

Snapshots: No snapshots

Created: 9th Feb 2024 at 17:54, Last updated: 15th Jan 2025 at 17:58

Device Imaging - Data Linked

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Patient-specific vascularized tumor model: Bloc...

Organisms: No organisms

SOPs: P.KAM-240129-V1_Device-iVas.docx, P.KAM-240129-V1_Imaging-Analysis-iVas.docx, P.KAM-240129-V1_Immunofluorescene-iVas.docx, P.KAM-240129-V1_Migration-Assays-iVas.docx

Data files: samples-publish2024-02-09-D.IMG.xlsx, samples-publish2024-02-09-OOC.xlsx

Snapshots: No snapshots

Created: 9th Feb 2024 at 17:56, Last updated: 18th Dec 2024 at 18:26

Migration Assay Analysis - Data Linked

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Patient-specific vascularized tumor model: Bloc...

Organisms: No organisms

SOPs: P.KAM-240129-V1_Imaging-Analysis-iVas.docx, P.KAM-240129-V1_Migration-Assays-iVas.docx

Data files: samples-publish2024-02-09-A.MIGR.xlsx, samples-publish2024-02-09-D.IMG.xlsx

Snapshots: No snapshots

Created: 9th Feb 2024 at 17:56, Last updated: 18th Dec 2024 at 18:26

All Metadata

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Patient-specific vascularized tumor model: Bloc...

Organisms: No organisms

SOPs: No SOPs

Data files: iVas - All Metadata

Snapshots: No snapshots

Created: 9th Feb 2024 at 19:10, Last updated: 18th Dec 2024 at 16:47

Flow Cytometry - Data Linked

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Patient-specific vascularized tumor model: Bloc...

Organisms: No organisms

SOPs: P.KAM-240129-V1_Flow-Cytometry-iVas.docx

Data files: samples-publish2024-02-09-AB.xlsx, samples-publish2024-02-09-ABP.xlsx, samples-publish2024-02-09-CEL.xlsx, samples-publish2024-02-09-D.FLOW.xlsx

Snapshots: No snapshots

Created: 9th Feb 2024 at 17:57, Last updated: 18th Dec 2024 at 16:47

Flow Cytometry Analysis - Data Linked

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Patient-specific vascularized tumor model: Bloc...

Organisms: No organisms

SOPs: No SOPs

Data files: samples-publish2024-02-09-A.FLOW.xlsx, samples-publish2024-02-09-D.FLOW.xlsx

Snapshots: No snapshots

Created: 9th Feb 2024 at 17:58, Last updated: 18th Dec 2024 at 16:47

Microfluidic Device Creation - Metadata

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Patient-specific vascularized tumor model: Bloc...

Organisms: No organisms

SOPs: P.KAM-240129-V1_Device-iVas.docx

Data files: samples-publish2024-02-09-CEL.xlsx, samples-publish2024-02-09-OOC.xlsx

Snapshots: No snapshots

Created: 9th Feb 2024 at 17:55, Last updated: 18th Dec 2024 at 16:47

All Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: High-dose intravenous BCG vaccination induces e...

Organisms: No organisms

SOPs: No SOPs

Data files: JP_IVBCG_AllMetadata.xlsx

Snapshots: No snapshots

Created: 4th Dec 2024 at 20:39, Last updated: 5th Dec 2024 at 16:15

Library Creation - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: High-dose intravenous BCG vaccination induces e...

Organisms: No organisms

SOPs: P.SHA-220819-V1_SeqWellHughes.et.al.Master.Prot...

Data files: samples-publishJP_IVCBG_DNA.xlsx, samples-publishJP_IVCBG_TIS.xlsx

Snapshots: No snapshots

Created: 2nd Dec 2024 at 19:23, Last updated: 5th Dec 2024 at 16:15

Tissue Collection - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: High-dose intravenous BCG vaccination induces e...

Organisms: No organisms

SOPs: P.BRY-241204-V1_StudyDesign_JP_IVBCG.docx

Data files: samples-publishJP_IVCBG_PAV.xlsx, samples-publishJP_IVCBG_TIS.xlsx

Snapshots: No snapshots

Created: 2nd Dec 2024 at 19:22, Last updated: 5th Dec 2024 at 16:15

Short Read Sequencing - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: High-dose intravenous BCG vaccination induces e...

Organisms: No organisms

SOPs: P.SHA-220819-V1_SeqWellHughes.et.al.Master.Prot...

Data files: samples-publishJP_IVCBG_D.SEQ.xlsx, samples-publishJP_IVCBG_DNA.xlsx

Snapshots: No snapshots

Created: 2nd Dec 2024 at 19:24, Last updated: 4th Dec 2024 at 21:13

Single Cell Expression Analysis - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: High-dose intravenous BCG vaccination induces e...

Organisms: No organisms

SOPs: P.SHA-220912-V1_Drop-seq_Alignment_Cookbook.pdf

Data files: samples-publishJP_IVCBG_A.SCXP.xlsx, samples-publishJP_IVCBG_D.SEQ.xlsx

Snapshots: No snapshots

Created: 2nd Dec 2024 at 19:25, Last updated: 4th Dec 2024 at 21:13

Patient Visit - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: High-dose intravenous BCG vaccination induces e...

Organisms: No organisms

SOPs: P.BRY-241204-V1_StudyDesign_JP_IVBCG.docx

Data files: samples-publishJP_IVCBG_BAC.xlsx, samples-publishJP_IVCBG_NHP.xlsx, samples-publishJP_IVCBG_PAV.xlsx

Snapshots: No snapshots

Created: 2nd Dec 2024 at 19:20, Last updated: 4th Dec 2024 at 21:13

Device Imaging - Data Linked

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Utilizing convolutional neural networks for dis...

Organisms: No organisms

SOPs: P.KAM-240227-V1_Image-Aquisiton-CNN.docx;

Data files: samples-publish2024-03-05-D.IMG.xlsx, samples-publish2024-03-05-OOC.xlsx and 1 hidden item

Snapshots: No snapshots

Created: 5th Mar 2024 at 18:50, Last updated: 23rd Oct 2024 at 19:28

Model Validation

Hi-IMPAcTB

Training data for this Model is available: https://fairdomhub.org/studies/1198

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multi-modal data integration using Markov Field...

Organisms: No organisms

SOPs: P.LAU-240111-V1_SW_LMM_ReadMe.docx

Data files: samples-publishSW_A.FLOW.xlsx, samples-publishSW_A.TITR.xlsx, samples-publishSW_MDL.xlsx

Snapshots: No snapshots

Created: 31st Jul 2024 at 19:45, Last updated: 9th Oct 2024 at 19:32

UV-Vis Spectroscopy Analysis - Data Linked

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Colorimetric Detection of Aqueous N-Nitrosodime...

Organisms: No organisms

SOPs: P.SWA-240522-V1_CW-NaphthosulfonateIndicator.docx

Data files: samples-publish2024-05-22-A.SPC.xlsx, samples-publish2024-05-22-D.SPC.xlsx

Snapshots: No snapshots

Created: 16th May 2024 at 14:33, Last updated: 18th Sep 2024 at 18:21

All Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multi-modal data integration using Markov Field...

Organisms: No organisms

SOPs: No SOPs

Data files: RITUX SW - All Metadata.xlsx

Snapshots: No snapshots

Created: 17th Sep 2024 at 20:29, Last updated: 18th Sep 2024 at 14:53

Flow Cytometry Analysis - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multi-modal data integration using Markov Field...

Organisms: No organisms

SOPs: P.FLY-240411-V1_Flynn_RITUX_Flow_Cytometry_Prot...

Data files: samples-publishSW_A.FLOW.xlsx, samples-publishSW_D.FLOW.xlsx

Snapshots: No snapshots

Created: 31st Jul 2024 at 19:44, Last updated: 18th Sep 2024 at 14:53

Antibody Titer Analysis - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multi-modal data integration using Markov Field...

Organisms: No organisms

SOPs: P.ALT-231222-V1_ivbcg_ritux_ab_methods.docx

Data files: samples-publishSW_A.TITR.xlsx, samples-publishSW_D.TITR.xlsx

Snapshots: No snapshots

Created: 31st Jul 2024 at 19:43, Last updated: 18th Sep 2024 at 14:53

Antibody Titer - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multi-modal data integration using Markov Field...

Organisms: No organisms

SOPs: P.ALT-231222-V1_ivbcg_ritux_ab_methods.docx

Data files: samples-publishSW_D.TITR.xlsx, samples-publishSW_TIS.xlsx

Snapshots: No snapshots

Created: 31st Jul 2024 at 19:42, Last updated: 18th Sep 2024 at 14:53

PET/CT Scan - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multi-modal data integration using Markov Field...

Organisms: No organisms

SOPs: P.FLY-230523-V1_PET_CT_Imaging

Data files: samples-publishSW_D.IMG.xlsx, samples-publishSW_PAV.xlsx

Snapshots: No snapshots

Created: 31st Jul 2024 at 19:41, Last updated: 18th Sep 2024 at 14:53

Tissue Collection - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multi-modal data integration using Markov Field...

Organisms: No organisms

SOPs: P.FLY-240808-V1_TISs_RITUX.docx

Data files: samples-publishSW_PAV.xlsx, samples-publishSW_TIS.xlsx

Snapshots: No snapshots

Created: 31st Jul 2024 at 19:40, Last updated: 18th Sep 2024 at 14:53

Patient Visit - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multi-modal data integration using Markov Field...

Organisms: No organisms

SOPs: P.FLY-240808-V1_NHPs_RITUX.docx

Data files: samples-publishSW_NHP.xlsx, samples-publishSW_PAV.xlsx

Snapshots: No snapshots

Created: 31st Jul 2024 at 19:39, Last updated: 18th Sep 2024 at 14:53

Fourier Transform Infrared Spectroscopy - Data Linked

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Optical Detection of Interleukin-6 using Liquid...

Organisms: No organisms

SOPs: P.SWA-240105-V1_FTIR-Protocol.txt

Data files: samples-publish2024-02-10-CHM.xlsx, samples-publish2024-02-10-D.SPC.xlsx

Snapshots: No snapshots

Created: 9th Feb 2024 at 19:52, Last updated: 22nd Aug 2024 at 15:22

Pendant Drop Tensiometry - Data Linked

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Optical Detection of Interleukin-6 using Liquid...

Organisms: No organisms

SOPs: P.SWA-240105-V1_Pendant-Drop-Tensiometry-Protoc...

Data files: samples-publish2024-02-10-CHM.xlsx, samples-publish2024-02-10-D.TNSY.xlsx

Snapshots: No snapshots

Created: 9th Feb 2024 at 19:53, Last updated: 22nd Aug 2024 at 15:22

All Metadata

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Optical Detection of Interleukin-6 using Liquid...

Organisms: No organisms

SOPs: No SOPs

Data files: MC - All Metadata.xlsx

Snapshots: No snapshots

Created: 9th Feb 2024 at 20:28, Last updated: 22nd Aug 2024 at 15:22

Nuclear Magnetic Resonance Spectroscopy Analysis - Data Linked

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Optical Detection of Interleukin-6 using Liquid...

Organisms: No organisms

SOPs: No SOPs

Data files: samples-publish2024-02-10-A.NMR.xlsx, samples-publish2024-02-10-D.NMR.xlsx

Snapshots: No snapshots

Created: 9th Feb 2024 at 19:50, Last updated: 22nd Aug 2024 at 15:22

Gel Permeation Chromatography - Data Linked

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Optical Detection of Interleukin-6 using Liquid...

Organisms: No organisms

SOPs: P.SWA-240105-V1_GPC-Protocol.txt

Data files: samples-publish2024-02-10-CHM.xlsx, samples-publish2024-02-10-D.GPC.xlsx

Snapshots: No snapshots

Created: 9th Feb 2024 at 19:51, Last updated: 22nd Aug 2024 at 15:22

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