Assays

What is an Assay?

143 Assays visible to you, out of a total of 163

Single Cell Sequencing - Data Linked

Endometriosis

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Endometriosis

Study: Integrating endometrial proteomic and single ce...

Organisms: No organisms

SOPs: P.GRI-231101-V1_scRNA_Protocol

Data files: samples-publish2023-11-03_D.SEQ.xlsx, samples-publish2023-11-03_DNA.xlsx

Snapshots: No snapshots

Created: 3rd Nov 2023 at 18:31, Last updated: 17th Nov 2023 at 21:45

Mass Spectrometry Proteomics Analysis - Data Linked

Endometriosis

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Endometriosis

Study: Integrating endometrial proteomic and single ce...

Organisms: No organisms

SOPs: P.GRI-230228-V1_2.3-Tissue-Preparation-for-Prot...

Data files: samples-publish2023-11-03_A.MSP.xlsx, samples-publish2023-11-03_D.MSP.xlsx

Snapshots: No snapshots

Created: 6th Nov 2023 at 21:53, Last updated: 17th Nov 2023 at 21:45

Patient Visit - Metadata

Endometriosis

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Endometriosis

Study: Integrating endometrial proteomic and single ce...

Organisms: No organisms

SOPs: P.GRI-230228-V1_2.1-Study-Approval.docx

Data files: samples-publish2023-11-03_PAT.xlsx, samples-publish2023-11-03_PAV.xlsx

Snapshots: No snapshots

Created: 3rd Nov 2023 at 14:11, Last updated: 17th Nov 2023 at 21:45

Tissue Collection - Metadata

Endometriosis

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Endometriosis

Study: Integrating endometrial proteomic and single ce...

Organisms: No organisms

SOPs: P.GRI-230228-V1_2.1-Study-Approval.docx, P.GRI-231030-V1_Tissue_Protocol

Data files: samples-publish2023-11-03_PAV.xlsx, samples-publish2023-11-03_TIS.xlsx

Snapshots: No snapshots

Created: 3rd Nov 2023 at 14:27, Last updated: 17th Nov 2023 at 21:45

DNA Extraction - Metadata

Endometriosis

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Endometriosis

Study: Integrating endometrial proteomic and single ce...

Organisms: No organisms

SOPs: P.GRI-231101-V1_scRNA_Protocol

Data files: samples-publish2023-11-03_DNA.xlsx, samples-publish2023-11-03_TIS.xlsx

Snapshots: No snapshots

Created: 3rd Nov 2023 at 14:46, Last updated: 17th Nov 2023 at 21:45

Cell Culture and Organoid Generation - Metadata

Endometriosis

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Endometriosis

Study: Organoid co-culture model of the cycling human ...

Organisms: No organisms

SOPs: P.GRI-231030-V1_Cell_Culture_and_Organoid_Gener...

Data files: samples-publish2023-11-03_CEL.xlsx, samples-publish2023-11-03_TIS.xlsx

Snapshots: No snapshots

Created: 3rd Nov 2023 at 14:44, Last updated: 17th Nov 2023 at 21:20

DNA Extraction - Metadata

Endometriosis

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Endometriosis

Study: Organoid co-culture model of the cycling human ...

Organisms: No organisms

SOPs: P.GRI-231101-V1_RNA-isolation-and-bulk-RNA-seq

Data files: samples-publish2023-11-03_CEL.xlsx, samples-publish2023-11-03_DNA_2.xlsx

Snapshots: No snapshots

Created: 3rd Nov 2023 at 15:11, Last updated: 17th Nov 2023 at 21:20

Luminex - Data Linked

Endometriosis

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Endometriosis

Study: Organoid co-culture model of the cycling human ...

Organisms: No organisms

SOPs: No SOPs

Data files: samples-publish2023-11-03_CEL.xlsx, samples-publish2023-11-03_D.LMX.xlsx

Snapshots: No snapshots

Created: 3rd Nov 2023 at 15:11, Last updated: 17th Nov 2023 at 21:20

Elisa - Data Linked

Endometriosis

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Endometriosis

Study: Organoid co-culture model of the cycling human ...

Organisms: No organisms

SOPs: P.GRI-231103-V1_ELISA_Luminex_Protocol

Data files: samples-publish2023-11-03_CEL.xlsx, samples-publish2023-11-03_D.ELISA.xlsx

Snapshots: No snapshots

Created: 3rd Nov 2023 at 15:13, Last updated: 17th Nov 2023 at 21:20

Cell Culture Imaging - Data Linked

Endometriosis

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Endometriosis

Study: Organoid co-culture model of the cycling human ...

Organisms: No organisms

SOPs: P.GRI-231030-V4_Imaging_Protocol

Data files: samples-publish2023-11-03_AB_IMF.xlsx, samples-publish2023-11-03_CEL.xlsx, samples-publish2023-11-03_D.IMG_CCI.xlsx

Snapshots: No snapshots

Created: 3rd Nov 2023 at 15:14, Last updated: 17th Nov 2023 at 21:20

Short Read Sequencing - Data Linked

Endometriosis

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Endometriosis

Study: Organoid co-culture model of the cycling human ...

Organisms: No organisms

SOPs: P.GRI-231101-V1_RNA-isolation-and-bulk-RNA-seq

Data files: samples-publish2023-11-03_D.SEQ_CEL.xlsx, samples-publish2023-11-03_DNA_2.xlsx

Snapshots: No snapshots

Created: 3rd Nov 2023 at 18:29, Last updated: 17th Nov 2023 at 21:20

Patient Visit - Metadata

Endometriosis

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Endometriosis

Study: Organoid co-culture model of the cycling human ...

Organisms: No organisms

SOPs: P.GRI-230228-V1_2.1-Study-Approval.docx

Data files: samples-publish2023-11-03_PAT.xlsx, samples-publish2023-11-03_PAV.xlsx

Snapshots: No snapshots

Created: 3rd Nov 2023 at 14:08, Last updated: 17th Nov 2023 at 21:20

Tissue Collection - Metadata

Endometriosis

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Endometriosis

Study: Organoid co-culture model of the cycling human ...

Organisms: No organisms

SOPs: P.GRI-230228-V1_2.1-Study-Approval.docx, P.GRI-231030-V1_Tissue_Protocol

Data files: samples-publish2023-11-03_PAV.xlsx, samples-publish2023-11-03_TIS.xlsx

Snapshots: No snapshots

Created: 3rd Nov 2023 at 14:26, Last updated: 17th Nov 2023 at 21:20

All Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: CD8+ lymphocytes are critical for early control...

Organisms: No organisms

SOPs: No SOPs

Data files: All Metadata - CD8 Depletion.xlsx

Snapshots: No snapshots

Created: 13th Oct 2023 at 20:11, Last updated: 24th Oct 2023 at 16:40

Immunohistochemistry - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: CD8+ lymphocytes are critical for early control...

Organisms: No organisms

SOPs: P.FLY-230911-V1_IHC-CD8 Depletion

Data files: AB-IHC-samples-publish2023-10-11_17-10.xlsx, D.IMG-IHC-samples-publish2023-10-11_17-30.xlsx, TIS-samples-publish2023-10-11_14-11.xlsx

Snapshots: No snapshots

Created: 11th Oct 2023 at 16:48, Last updated: 23rd Oct 2023 at 20:08

PET/CT Scan - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: CD8+ lymphocytes are critical for early control...

Organisms: No organisms

SOPs: P.FLY-230523-V1_PET_CT_Imaging

Data files: D.IMG-PET-samples-publish2023-10-11_17-42.xlsx, PAV-2-samples-publish2023-10-11_13-11.xlsx

Snapshots: No snapshots

Created: 11th Oct 2023 at 16:46, Last updated: 23rd Oct 2023 at 19:33

Single Cell Expression Analysis - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: CD8+ lymphocytes are critical for early control...

Organisms: No organisms

SOPs: P.SHA-220912-V1_Drop-seq_Alignment_Cookbook.pdf

Data files: A.SCXP-samples-publish2023-10-11_18-00.xlsx, DSEQ-TIS-samples-publish2023-10-11_15-50.xlsx

Snapshots: No snapshots

Created: 11th Oct 2023 at 17:49, Last updated: 20th Oct 2023 at 19:30

Short Read Sequencing - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: CD8+ lymphocytes are critical for early control...

Organisms: No organisms

SOPs: P.FOR-230503-V1_Barcoding-Whole-Genome-Sequenci..., P.FOR-230503-V1_Barcoding_Amplicon_Feb2023, P.SHA-220819-V1_SeqWellHughes.et.al.Master.Prot...

Data files: DNA-BAC-samples-publish2023-10-11_14-51.xlsx, DNA-TIS-samples-publish2023-10-11_14-50.xlsx, DSEQ-BAC-samples-publish2023-10-11_15-51.xlsx, DSEQ-TIS-samples-publish2023-10-11_15-50.xlsx

Snapshots: No snapshots

Created: 11th Oct 2023 at 17:45, Last updated: 20th Oct 2023 at 19:27

Digitally Barcoded Mtb Matrix Analysis - Data Attached

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: CD8+ lymphocytes are critical for early control...

Organisms: No organisms

SOPs: P.FOR-231020-V1_DBMM-Analysis-CD8.docx

Data files: A.DBMM-samples-publish2023-10-11_16-10.xlsx, CD8 Depletion Digitally Barcoded MTB Matrix.xlsx, DSEQ-BAC-samples-publish2023-10-11_15-51.xlsx

Snapshots: No snapshots

Created: 11th Oct 2023 at 17:48, Last updated: 20th Oct 2023 at 19:27

DNA Extraction - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: CD8+ lymphocytes are critical for early control...

Organisms: No organisms

SOPs: P.FOR-230503-V1_Barcoding_Amplicon_Feb2023, P.SHA-220819-V1_SeqWellHughes.et.al.Master.Prot...

Data files: BAC-samples-publish2023-10-11_14-35.xlsx, DNA-BAC-samples-publish2023-10-11_14-51.xlsx, DNA-TIS-samples-publish2023-10-11_14-50.xlsx, TIS-samples-publish2023-10-11_14-11.xlsx

Snapshots: No snapshots

Created: 11th Oct 2023 at 16:52, Last updated: 20th Oct 2023 at 16:00

Flow Cytometry - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: CD8+ lymphocytes are critical for early control...

Organisms: No organisms

SOPs: P.FLY-230509-V1_CD8-NX-Protocol

Data files: AB-FCS-samples-publish2023-10-11_15-07.xlsx, ABP-samples-publish2023-10-11_16-15.xlsx, D.FLOW-samples-publish2023-10-11_16-20.xlsx, TIS-samples-publish2023-10-11_14-11.xlsx

Snapshots: No snapshots

Created: 11th Oct 2023 at 16:49, Last updated: 20th Oct 2023 at 14:51

Flow Cytometry Analysis - Data Attached

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: CD8+ lymphocytes are critical for early control...

Organisms: No organisms

SOPs: No SOPs

Data files: A.FLOW-samples-publish2023-10-11_16-45.xlsx, CD8 counts AFLOW, CD8 cytokine AFLOW, D.FLOW-samples-publish2023-10-11_16-20.xlsx

Snapshots: No snapshots

Created: 11th Oct 2023 at 16:51, Last updated: 20th Oct 2023 at 14:51

Bacterial Extraction - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: CD8+ lymphocytes are critical for early control...

Organisms: No organisms

SOPs: P.FOR-231011_Bacterial Extraction

Data files: BAC-samples-publish2023-10-11_14-35.xlsx, TIS-samples-publish2023-10-11_14-11.xlsx

Snapshots: No snapshots

Created: 11th Oct 2023 at 17:46, Last updated: 19th Oct 2023 at 18:25

Tissue Collection - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: CD8+ lymphocytes are critical for early control...

Organisms: No organisms

SOPs: P.FLY-210708-V1_Hannah's-GentleMacs-Protocol-as..., P.FLY-231011_Patient Visit CD8

Data files: PAV-2-samples-publish2023-10-11_13-11.xlsx, TIS-samples-publish2023-10-11_14-11.xlsx

Snapshots: No snapshots

Created: 11th Oct 2023 at 16:45, Last updated: 19th Oct 2023 at 17:08

Patient Visit - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: CD8+ lymphocytes are critical for early control...

Organisms: No organisms

SOPs: P.FLY-220823-V1_P---NHP_housing.docx, P.FLY-231011_Patient Visit CD8

Data files: AB-samples-publish2023-10-11_13-30.xlsx, BAC-samples-publish2023-10-11_13-48.xlsx, NHP-samples-publish2023-10-11_12-59.xlsx, PAV-2-samples-publish2023-10-11_13-11.xlsx

Snapshots: No snapshots

Created: 11th Oct 2023 at 16:43, Last updated: 13th Oct 2023 at 20:12

Comet Chip - Data Linked

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Novel In Vivo CometChip Reveals NDMA-Induced DN...

Organisms: No organisms

SOPs: P.ENG-230912-V1_Cell-Culture.docx, P.ENG-230912-V1_In-Vivo-Comet-Assay-Protocol.docx

Data files: CEL-samples-publish2023-09-19_13-11.xlsx, D.IMG-samples-publish2023-09-13_12-43.xlsx, TIS-samples-publish2023-09-13_12-27.xlsx

Snapshots: No snapshots

Created: 13th Sep 2023 at 16:15, Last updated: 19th Sep 2023 at 18:18

Comet Chip Analysis - Data Attached

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Novel In Vivo CometChip Reveals NDMA-Induced DN...

Organisms: No organisms

SOPs: P.ENG-230912-V1_In-Vivo-Comet-Assay-Protocol.docx

Data files: D.IMG-samples-publish2023-09-13_12-43.xlsx, Figure 2B MMS 211203.pzfx, Figure 3A hAAG 211201_Enzymes.pzfx, Figure 3B MMS FPG.pzfx, Figure 4B.pzfx, Figure 5A Liver Time Course.pzfx, Figure 5B Lung time course.pzfx, Figure 5C Kidney NDMA Time Course.pzfx, Figure 6A Liver hAAG.pzfx, Figure 6B Liver Fpg.pzfx, Figure 6C-D Lung with Enzymes.pzfx, Figure 6E-F In_vivo_NDMA_Kidney w Enzymes copy...., Figure S2 MEFs and HepG2.pzfx, Figure S5A In_vivo_NDMA_Pancreas.pzfx, Figure S5B NDMA Spleen.pzfx

Snapshots: No snapshots

Created: 13th Sep 2023 at 16:15, Last updated: 19th Sep 2023 at 18:18

Tissue Collection - Metadata

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Novel In Vivo CometChip Reveals NDMA-Induced DN...

Organisms: No organisms

SOPs: P.ENG-230912-V1_MMS-and-NDMA-TIS.docx, P.ENG-230913-V1_In-Vivo-Comet-Chip---MUS.docx

Data files: MUS-samples-publish2023-09-13_11-48.xlsx, TIS-samples-publish2023-09-13_12-27.xlsx

Snapshots: No snapshots

Created: 13th Sep 2023 at 16:14, Last updated: 13th Sep 2023 at 17:31

Chemical Challenge - Metadata

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Novel In Vivo CometChip Reveals NDMA-Induced DN...

Organisms: No organisms

SOPs: P.ENG-230913-V1_Chemicals-and-Reagents.docx, P.ENG-230913-V1_In-Vivo-Comet-Chip---MUS.docx

Data files: CHM-samples-publish2023-09-13_11-34.xlsx, MUS-samples-publish2023-09-13_11-48.xlsx

Snapshots: No snapshots

Created: 13th Sep 2023 at 16:13, Last updated: 13th Sep 2023 at 17:15

Clot Modeling Analysis - Data Linked

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Impact of fibrinogen, fibrin thrombi and thromb...

Organisms: No organisms

SOPs: P.KAM-230131-V1_clot-generate-and-image-analysi...

Data files: A.CLOT-samples-publish2023-05-16_12-55.xlsx

Snapshots: No snapshots

Created: 15th May 2023 at 20:59, Last updated: 16th May 2023 at 18:27

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