Assays

What is an Assay?

309 Assays visible to you, out of a total of 309

Imaging Analysis - Data Linked

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Confined cell migration along extracellular mat...

Organisms: No organisms

SOPs: P.FRI-250515-V1_3DOpticalFlowAlgorithm.docx, P.FRI-250515-V1_IntravitalMircoscopyofTumorCell...

Data files: samples-publish_PF-IVM_A.IMG.xlsx, samples-publish_PF-IVM_D.IMG.xlsx

Snapshots: No snapshots

Created: 15th May 2025 at 18:36, Last updated: 15th May 2025 at 19:01

Intravital Microscopy

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Confined cell migration along extracellular mat...

Organisms: No organisms

SOPs: P.FRI-250515-V1_IntravitalMircoscopyofTumorCell...

Data files: samples-publish_PF-IVM_D.IMG.xlsx, samples-publish_PF-IVM_MUS.xlsx

Snapshots: No snapshots

Created: 15th May 2025 at 18:35, Last updated: 15th May 2025 at 18:58

Modeling - Data Linked

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Chromatin conformation, gene transcription, and...

Organisms: No organisms

SOPs: P.BAC-250424-V1_Modeling_ChromatinConformation.pdf

Data files: samples-publish_VB-CC_MDL.xlsx

Snapshots: No snapshots

Created: 24th Apr 2025 at 17:25, Last updated: 24th Apr 2025 at 18:07

All Metadata

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Chromatin conformation, gene transcription, and...

Organisms: No organisms

SOPs: No SOPs

Data files: All Metadata - VB_CC.xlsx

Snapshots: No snapshots

Created: 24th Apr 2025 at 18:04, Last updated: 24th Apr 2025 at 18:06

Chromatin Sequencing Analysis - Data Linked

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Chromatin conformation, gene transcription, and...

Organisms: No organisms

SOPs: P.BAC-250422-V1_Hi-C_ChromatinConformation.docx

Data files: samples-publish_VB-CC_A.CHRM.xlsx, samples-publish_VB-CC_D.SEQ.xlsx

Snapshots: No snapshots

Created: 24th Apr 2025 at 17:16, Last updated: 24th Apr 2025 at 18:04

Short Read Sequencing - Data Linked

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Chromatin conformation, gene transcription, and...

Organisms: No organisms

SOPs: P.BAC-250422-V1_Hi-C_ChromatinConformation.docx

Data files: samples-publish_VB-CC_D.SEQ.xlsx, samples-publish_VB-CC_DNA.xlsx

Snapshots: No snapshots

Created: 24th Apr 2025 at 17:15, Last updated: 24th Apr 2025 at 18:00

Library Creation - Metadata

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Chromatin conformation, gene transcription, and...

Organisms: No organisms

SOPs: P.BAC-250422-V1_Hi-C_ChromatinConformation.docx

Data files: samples-publish_VB-CC_CEL.xlsx, samples-publish_VB-CC_DNA.xlsx

Snapshots: No snapshots

Created: 24th Apr 2025 at 17:12, Last updated: 24th Apr 2025 at 17:55

Imaging Analysis - Data Linked

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Chromatin conformation, gene transcription, and...

Organisms: No organisms

SOPs: P.BAC-250422-V1_ChromatinElectronMicroscopy_Chr..., P.BAC-250422-V1_PWS_ChromatinConformation.docx, P.BAC-250422-V1_SMLM_ChromatinConformation.docx

Data files: samples-publish_VB-CC_A.IMG.xlsx, samples-publish_VB-CC_D.IMG.xlsx

Snapshots: No snapshots

Created: 24th Apr 2025 at 17:11, Last updated: 24th Apr 2025 at 17:52

Cell Imaging - Data Linked

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Chromatin conformation, gene transcription, and...

Organisms: No organisms

SOPs: P.BAC-250422-V1_ChromatinElectronMicroscopy_Chr..., P.BAC-250422-V1_PWS_ChromatinConformation.docx, P.BAC-250422-V1_SMLM_ChromatinConformation.docx

Data files: samples-publish_VB-CC_CEL.xlsx, samples-publish_VB-CC_D.IMG.xlsx

Snapshots: No snapshots

Created: 24th Apr 2025 at 17:10, Last updated: 24th Apr 2025 at 17:49

Cell Culture - Metadata

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Chromatin conformation, gene transcription, and...

Organisms: No organisms

SOPs: P.BAC-250422-V1_CellCulture_ChromatinConformati...

Data files: samples-publish_VB-CC_CEL.xlsx

Snapshots: No snapshots

Created: 24th Apr 2025 at 17:09, Last updated: 24th Apr 2025 at 17:41

Flow Cytometry Analysis - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Antibody-Fab and -Fc features promote Mycobacte...

Organisms: No organisms

SOPs: P.ALT-241112-V1_Protocol_flow_staining.docx

Data files: samples-publish_PG_A.FLOW.xlsx, samples-publish_PG_D.FLOW.xlsx

Snapshots: No snapshots

Created: 22nd Apr 2025 at 18:13, Last updated: 23rd Apr 2025 at 19:23

All Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Antibody-Fab and -Fc features promote Mycobacte...

Organisms: No organisms

SOPs: No SOPs

Data files: All Metadata - PG.xlsx

Snapshots: No snapshots

Created: 23rd Apr 2025 at 18:31, Last updated: 23rd Apr 2025 at 19:23

ADCD Analysis - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Antibody-Fab and -Fc features promote Mycobacte...

Organisms: No organisms

SOPs: P.ALT-241204-V1_Protocol_lmx_comp_deposition_as...

Data files: samples-publish_PG_A.ADCD.xlsx, samples-publish_PG_D.ADCD.xlsx

Snapshots: No snapshots

Created: 22nd Apr 2025 at 18:21, Last updated: 23rd Apr 2025 at 18:58

Antibody Dependent Complement Deposition - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Antibody-Fab and -Fc features promote Mycobacte...

Organisms: No organisms

SOPs: P.ALT-241204-V1_Protocol_lmx_comp_deposition_as...

Data files: samples-publish_PG_AB.xlsx, samples-publish_PG_D.ADCD.xlsx

Snapshots: No snapshots

Created: 22nd Apr 2025 at 18:20, Last updated: 23rd Apr 2025 at 18:56

FC-Receptor Binding Assay - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Antibody-Fab and -Fc features promote Mycobacte...

Organisms: No organisms

SOPs: P.ALT-241202-V1_Protocol_lmx_FcgR_assay.docx

Data files: samples-publish_PG_AB.xlsx, samples-publish_PG_ABP.xlsx, samples-publish_PG_D.FCRB.xlsx

Snapshots: No snapshots

Created: 22nd Apr 2025 at 18:19, Last updated: 23rd Apr 2025 at 18:49

ELISA Assay - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Antibody-Fab and -Fc features promote Mycobacte...

Organisms: No organisms

SOPs: P.ALT-241202-V1_LAM_ELISA.docx

Data files: samples-publish_PG_AB.xlsx, samples-publish_PG_ABP.xlsx, samples-publish_PG_D.ELSA.xlsx

Snapshots: No snapshots

Created: 22nd Apr 2025 at 18:17, Last updated: 23rd Apr 2025 at 18:46

Bacterial Survivability Restriction Assay - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Antibody-Fab and -Fc features promote Mycobacte...

Organisms: No organisms

SOPs: P.ALT-250418-V1_Protocol_mtb_restriction_assay_...

Data files: samples-publish_PG_AB.xlsx, samples-publish_PG_CEL.xlsx, samples-publish_PG_D.BSRA.xlsx, samples-publish_PG_D.BSRA.xlsx

Snapshots: No snapshots

Created: 22nd Apr 2025 at 18:16, Last updated: 23rd Apr 2025 at 18:44

Antibody Dependent Functional Profiling - Data Linked

Hi-IMPAcTB

Antibody Dependent Functional Profiling* and Analysis Represents:

ADMP: Macrophage Phagocytosis

ADNP: Neutrophil Phagocytosis

ADDCP: Dendritic Cell Phagocytosis

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Antibody-Fab and -Fc features promote Mycobacte...

Organisms: No organisms

SOPs: P.ALT-241105-V1_Protocol_phagocytic_assays_BM_c...

Data files: samples-publish_PG_AB.xlsx, samples-publish_PG_CEL.xlsx, samples-publish_PG_D.ADFP.xlsx

Snapshots: No snapshots

Created: 22nd Apr 2025 at 18:22, Last updated: 23rd Apr 2025 at 18:35

ADFP Analysis - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Antibody-Fab and -Fc features promote Mycobacte...

Organisms: No organisms

SOPs: No SOPs

Data files: samples-publish_PG_A.ADFP.xlsx, samples-publish_PG_D.ADFP.xlsx

Snapshots: No snapshots

Created: 22nd Apr 2025 at 18:23, Last updated: 23rd Apr 2025 at 18:35

Single Cell Expression Analysis - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Antibody-Fab and -Fc features promote Mycobacte...

Organisms: No organisms

SOPs: No SOPs

Data files: samples-publish_PG_A.SCXP.xlsx, samples-publish_PG_D.SEQ.xlsx

Snapshots: No snapshots

Created: 22nd Apr 2025 at 18:15, Last updated: 23rd Apr 2025 at 18:35

Single Cell Clustering - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Antibody-Fab and -Fc features promote Mycobacte...

Organisms: No organisms

SOPs: P.ALT-250314-V1_Analysis-of-infection-scRNA.docx

Data files: samples-publish_PG_A.SCCL.xlsx, samples-publish_PG_A.SCXP.xlsx

Snapshots: No snapshots

Created: 22nd Apr 2025 at 18:16, Last updated: 23rd Apr 2025 at 18:35

Western Blot - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Antibody-Fab and -Fc features promote Mycobacte...

Organisms: No organisms

SOPs: No SOPs

Data files: samples-publish_PG_AB.xlsx

Snapshots: No snapshots

Created: 22nd Apr 2025 at 18:19, Last updated: 23rd Apr 2025 at 18:35

Short Read Sequencing - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Antibody-Fab and -Fc features promote Mycobacte...

Organisms: No organisms

SOPs: P.ALT-250314-V1_scRNA_PG.docx

Data files: samples-publish_PG_CEL.xlsx, samples-publish_PG_D.SEQ.xlsx

Snapshots: No snapshots

Created: 22nd Apr 2025 at 18:14, Last updated: 23rd Apr 2025 at 18:35

Single Cell Clustering Analysis - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Fc-engineered antibodies leverage neutrophils t...

Organisms: No organisms

SOPs: P.ALT-240411-V1_Fc-engineering-scRNAseq-Protoco...

Data files: samples-publish2024-06-04-A.SCCL.xlsx, samples-publish2024-06-04-A.SCXP.xlsx

Snapshots: No snapshots

Created: 4th Jun 2024 at 19:05, Last updated: 23rd Apr 2025 at 18:14

Patient Visit - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Specific CD4+ T cell phenotypes associate with ...

Organisms: No organisms

SOPs: P.BOO-230324-V1_KC_Protocol

Data files: PAT-samples-publish-2024-05-21_13-17.xlsx, PAT-samples-publish2023-05-17_13-17.xlsx, PAV-samples-publish-2024-05-21_13-27.xlsx, PAV-samples-publish2023-05-17_13-27.xlsx

Snapshots: No snapshots

Created: 15th May 2023 at 20:19, Last updated: 15th Apr 2025 at 16:27

Flow Cytometry Analysis - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Specific CD4+ T cell phenotypes associate with ...

Organisms: No organisms

SOPs: No SOPs

Data files: A.FLOW-samples-publish2023-05-17_15-39.xlsx, D.FLOW-samples-publish-2024-05-21_11-32.xlsx, D.FLOW-samples-publish2023-06-01_11-32.xlsx

Snapshots: No snapshots

Created: 17th May 2023 at 18:17, Last updated: 15th Apr 2025 at 16:23

Necropsy - Metadata

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Molecular origins of mutational spectra produce...

Organisms: No organisms

SOPs: No SOPs

Data files: MUS-samples-publish2023-03-08_12-23.xlsx, PAV-samples-publish2023-03-08_12-32.xlsx, TIS-samples-publish2023-03-08_12-40.xlsx

Snapshots: No snapshots

Created: 7th Mar 2023 at 20:17, Last updated: 14th Apr 2025 at 18:38

Mutational Spectral Analysis - Data Attached

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Molecular origins of mutational spectra produce...

Organisms: No organisms

SOPs: P.ESS-230303-V1_Data-processing-(alignment).docx

Data files: A.MUSP-samples-publish2023-03-08_17-46.xlsx, Armijo-NDMA_HRMS-data.xlsx

Snapshots: No snapshots

Created: 8th Mar 2023 at 18:43, Last updated: 14th Apr 2025 at 18:37

GPT Assay - Data Attached

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Molecular origins of mutational spectra produce...

Organisms: No organisms

SOPs: P.ESS-201123-V1_gpt-NextGen-Protocol-.pdf

Data files: D.GPT-samples-publish2023-03-08_13-55.xlsx, DNA-samples-publish2023-03-08_13-15.xlsx, NDMA_in-vivo_gpt_data.xlsx

Snapshots: No snapshots

Created: 7th Mar 2023 at 20:24, Last updated: 14th Apr 2025 at 18:37

Extraction and Library Creation - Metadata

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Molecular origins of mutational spectra produce...

Organisms: No organisms

SOPs: P.ENG-200806-V2_Short-Term-Collection-at-Necrop..., P.ENG-200831-V1_NDMA-Juvenile-Mouse-Injection-P..., P.ENG-220105-V1_NDMA-Juvenile-Mouse-Single-Inje..., P.ENG-220105-V1_Tissue-Collection-at-Necropsy-(..., P.ESS-230303-V2_Cell-culture.docx

Data files: CEL-samples-publish2023-03-08_11-57.xlsx, DNA-samples-publish2023-03-08_13-15.xlsx, TIS-samples-publish2023-03-08_12-40.xlsx

Snapshots: No snapshots

Created: 7th Mar 2023 at 20:22, Last updated: 14th Apr 2025 at 18:36

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