Assays

18 Assays visible to you, out of a total of 18

Cell free extract, without added Mn, with NAD recycling

Computational pathway design for biotechnological applications

Conversion of XYL to KG in a cell free extract of Caulobacter crescentus, without Mn2+ added, but with NAD recycling, metabolites measured enzymatically. https://jjj.bio.vu.nl/models/experiments/shen2020_fig4d/simulate

Submitter: Jacky Snoep

Biological problem addressed: Model Analysis Type

Investigation: Caulobacter crescentus Weimberg pathway

Study: Cell free extract

Organisms: No organisms

Models: CFE analysis (shen2), CFE no Mn, with NADrec

SOPs: No SOPs

Data files: CFE no-Mn but with NADrec data

Snapshots: Snapshot 1, Snapshot 2

DOI: 10.15490/fairdomhub.1.assay.995.2

Created: 11th Apr 2019 at 09:18, Last updated: 8th Jan 2020 at 15:12

Cell free extract, with Mn, no NAD recycling

Computational pathway design for biotechnological applications

Conversion of XYL to KG in a cell free extract of Caulobacter crescentus, with 0.15 mM Mn2+ added, but no NAD recycling, metabolites measured enzymatically. https://jjj.bio.vu.nl/models/experiments/shen2020_fig4c/simulate

Submitter: Jacky Snoep

Biological problem addressed: Model Analysis Type

Investigation: Caulobacter crescentus Weimberg pathway

Study: Cell free extract

Organisms: No organisms

Models: CFE Mn noNADrec, CFE analysis (shen2)

SOPs: No SOPs

Data files: CFE Mn no-NADrec data

Snapshots: Snapshot 1, Snapshot 2

DOI: 10.15490/fairdomhub.1.assay.994.2

Created: 11th Apr 2019 at 09:16, Last updated: 8th Jan 2020 at 15:11

Cell free extract, with Mn and NAD recycling

Computational pathway design for biotechnological applications

Conversion of XYL to KG in a cell free extract of Caulobacter crescentus, with 0.15 mM Mn2+ added, and with NAD recycling, metabolites measured enzymatically. https://jjj.bio.vu.nl/models/experiments/shen2020_fig4b/simulate

Submitter: Jacky Snoep

Biological problem addressed: Model Analysis Type

Investigation: Caulobacter crescentus Weimberg pathway

Study: Cell free extract

Organisms: No organisms

Models: CFE Mn NADrec, CFE analysis (shen2)

SOPs: No SOPs

Data files: CFE Mn NADrec data

Snapshots: Snapshot 1, Snapshot 2

DOI: 10.15490/fairdomhub.1.assay.993.2

Created: 11th Apr 2019 at 08:15, Last updated: 8th Jan 2020 at 15:10

One pot cascade 16

Computational pathway design for biotechnological applications

Conversion of XYL to KG in one pot cascade of Weimberg pathway enzymes of Caulobacter crescentus, using old enzymes with optimal protein distribution, with NAD recycling, measured in NMR. https://jjj.bio.vu.nl/models/experiments/shen2020_fig3d/simulate

Submitter: Jacky Snoep

Biological problem addressed: Model Analysis Type

Investigation: Caulobacter crescentus Weimberg pathway

Study: One pot cascade

Organisms: No organisms

Models: Cascade analysis (shen2), One pot cascade 16

SOPs: No SOPs

Data files: One-Pot-Cascade 16 data

Snapshots: Snapshot 1, Snapshot 2

DOI: 10.15490/fairdomhub.1.assay.991.2

Created: 10th Apr 2019 at 09:59, Last updated: 8th Jan 2020 at 15:10

One pot cascade 13

Computational pathway design for biotechnological applications

Conversion of XYL to KG in one pot cascade of Weimberg pathway enzymes of Caulobacter crescentus, with NAD recycling, measured in NMR. https://jjj.bio.vu.nl/models/experiments/shen2020_fig3b/simulate

Submitter: Jacky Snoep

Biological problem addressed: Model Analysis Type

Investigation: Caulobacter crescentus Weimberg pathway

Study: One pot cascade

Organisms: No organisms

Models: Cascade analysis (shen2), One-Pot-Cascade 13

SOPs: No SOPs

Data files: One-Pot-Cascade 13 data

Snapshots: Snapshot 1, Snapshot 2

DOI: 10.15490/fairdomhub.1.assay.989.2

Created: 9th Apr 2019 at 14:05, Last updated: 8th Jan 2020 at 15:09

One pot cascade 12

Computational pathway design for biotechnological applications

Conversion of XYL to KG in one pot cascade of Weimberg pathway enzymes of Caulobacter crescentus, omitting XLA, measured in NMR. https://jjj.bio.vu.nl/models/experiments/shen2020_fig3c/simulate

Submitter: Jacky Snoep

Biological problem addressed: Model Analysis Type

Investigation: Caulobacter crescentus Weimberg pathway

Study: One pot cascade

Organisms: No organisms

Models: Cascade analysis (shen2), One pot cascade 12

SOPs: No SOPs

Data files: One-Pot-Cascade 12 data

Snapshots: Snapshot 1, Snapshot 2

DOI: 10.15490/fairdomhub.1.assay.988.2

Created: 9th Apr 2019 at 14:05, Last updated: 8th Jan 2020 at 15:09

One pot cascade 10

Computational pathway design for biotechnological applications

Conversion of XYL to KG in one pot cascade of Weimberg pathway enzymes of Caulobacter crescentus, measured in NMR. https://jjj.bio.vu.nl/models/experiments/shen2020_fig3a/simulate

Submitter: Jacky Snoep

Biological problem addressed: Model Analysis Type

Investigation: Caulobacter crescentus Weimberg pathway

Study: One pot cascade

Organisms: No organisms

Models: Cascade analysis (shen2), One-Pot-Cascade 10

SOPs: No SOPs

Data files: One-Pot-Cascade 10 data

Snapshots: Snapshot 1, Snapshot 2

DOI: 10.15490/fairdomhub.1.assay.987.2

Created: 9th Apr 2019 at 14:02, Last updated: 8th Jan 2020 at 15:09

Progress curves combined

Computational pathway design for biotechnological applications

Conversion of XYL to KG by sequential addition of Weimberg pathway enzymes of Caulobacter crescentus, measured in NMR. https://jjj.bio.vu.nl/models/experiments/shen2020_fig2c/simulate

Submitter: Jacky Snoep

Biological problem addressed: Model Analysis Type

Investigation: Caulobacter crescentus Weimberg pathway

Study: Progress curves

Organisms: No organisms

Models: Progress curve analysis (shen1), Progress curve analysis combined

SOPs: No SOPs

Data files: Progress curve analysis data

Snapshots: Snapshot 1, Snapshot 2

DOI: 10.15490/fairdomhub.1.assay.986.2

Created: 9th Apr 2019 at 12:25, Last updated: 8th Jan 2020 at 15:08

XDH