Cell free extract, without added Mn, with NAD recycling

Conversion of XYL to KG in a cell free extract of Caulobacter crescentus, without Mn2+ added, but with NAD recycling, metabolites measured enzymatically. https://jjj.bio.vu.nl/models/experiments/shen2019_fig4d/simulate

DOI: 10.15490/fairdomhub.1.assay.995.1

Zenodo URL: None

Created at: 8th Jan 2020 at 14:19

Contents

CFE no-Mn but with NADrec data

Data files for the conversion of XYL to KG, in Caulobacter crescentus cell free extract, with NAD recycling, but without additional Mn2+ added.

  • cfe-noMn-Rec.xlsx

CFE no Mn, with NADrec

Model for the Caulobacter crescentus Weimberg pathway, describing the conversion of Xyl to KG in cell free extract. If the Mathematica notebook is downloaded and the data file is downloaded in the same directory, then the notebook can be evaluated, and the figure in the manuscript for the cell free extract with no added Mn, but with NAD rec, will be reproduced.

  • cfe-noMn-rec-SEEK.nb

CFE analysis (shen2)

Model for the Caulobacter crescentus Weimberg pathway, describing the conversion of Xyl to KG. Protein levels need to be adapted to CFE levels, see SED-ML scripts

  • shen2.xml
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Citation
Snoep, J., & Shen, L. (2020). Cell free extract, without added Mn, with NAD recycling. FAIRDOMHub. https://doi.org/10.15490/FAIRDOMHUB.1.ASSAY.995.1
Snapshots
Snapshot 2 (8th Jan 2020) DOI
Snapshot 1 (8th Jan 2020) DOI
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Created: 8th Jan 2020 at 14:19

Last updated: 8th Jan 2020 at 14:20

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