framework model v1_5 Version 1
Model associated with the following:
Hannah A Kinmonth-Schultz, Melissa J S MacEwen, Daniel D Seaton, Andrew J Millar, Takato Imaizumi, Soo-Hyung Kim, An explanatory model of temperature influence on flowering through whole-plant accumulation of FLOWERING LOCUS T in Arabidopsis thaliana, in silico Plants, Volume 1, Issue 1, 2019, diz006, https://doi.org/10.1093/insilicoplants/diz006
SEEK ID: https://fairdomhub.org/models/747?version=1
1 item is associated with this Model:-
Versions for FAIRDOM.zip (Zip file - 577 KB)
Organism: Arabidopsis thaliana
Model type: Not specified
Model format: Matlab package
Execution or visualisation environment: Matlab
Model image: No image specified
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Creators and Submitter
Views: 1464 Downloads: 58
Created: 14th Aug 2020 at 03:33
AttributionsVersion History
Version 1 (earliest) Created 14th Aug 2020 at 03:33 by Hannah Kinmonth-Schultz
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SynthSys is the University of Edinburgh's research organisation in interdisciplinary, Synthetic and Systems Biology, founded in 2012 as the successor to the Centre for Systems Biology at Edinburgh (CSBE).
Projects: Millar group, PHYTOCAL: Phytochrome Control of Resource Allocation and Growth in Arabidopsis and in Brassicaceae crops, TiMet, POP - the Parameter Optimisation Problem, Regulation of flowering time in natural conditions, PlaSMo model repository
Web page: http://www.synthsys.ed.ac.uk
Research programme in the Takato Imaizumi lab, with multiple collaborators. Published in Song et al. Nature Plants 2018; Kinmonth-Schultz et al., in silico Plant 2019.
Programme: SynthSys
Public web page: https://faculty.washington.edu/takato/
Project to test effects of temperature cycles on expression of Arabidopsis florigen gene FT, and whether these are mediated by temperature-dependent leaf development or temperature-specific FT expression, or both. Re-used and extended Arabidopsis Framework Model v1 to address this question. Led by Hannah Kinmonth-Schultz in Kim and Imaizumi labs, collaborating with Millar lab.
Submitter: Andrew Millar
Assays for model composition here, in order to share model files; potentially training and validation data in other Studies.
Submitter: Andrew Millar
Investigation: Temperature effects on Arabidopsis floral induc...
Model files for FMv1.5. The model is based on FMv1 of Chew et al. PNAS 2014, which is also in FAIRDOMHub and linked to the Model record as an 'Attribution'. FMv1 was extended in this work by Hannah Kinmonth-Schultz and Daniel Seaton, in Matlab.
Submitter: Andrew Millar
Biological problem addressed: Model Analysis Type
Investigation: Temperature effects on Arabidopsis floral induc...
